KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:58:33 2014  Check: 00 ..

 Name: BACU006746/1-189          Len:    254  Check:  2199  Weight:  1.00
 Name: ENSP00000390661/1-214     Len:    254  Check:  9693  Weight:  1.00
 Name: bmy_04326T0/1-186         Len:    254  Check:  8312  Weight:  1.00
 Name: ENSBTAP00000047979/1-214  Len:    254  Check:  76  Weight:  1.00

//


                          1                                                   50
BACU006746/1-189          ---------- ---------- ---------- ---------- ---------- 
ENSP00000390661/1-214     MEPAREPPSR ARPPPPLAAR PAPAPAAPRP RSPAEAEARG PEGLLRRSGS 
bmy_04326T0/1-186         ---------- ---------- --------RL RSPAEAEGRG PEGLLRRSGS 
ENSBTAP00000047979/1-214  RRPRAVGPFE LPAPPPPAVR PAPAPAAPRP RSPAEAEGRS PEGLLRRSGS 


                          51                                                 100
BACU006746/1-189          ---------- -MPDTTTRLL LGAIAVLLFA ILVVMSILAS KGCIKCEAPC 
ENSP00000390661/1-214     GYEGSTSWKA ALEDTTTRLL LGAIAVLLFA ILVVMSILAS KGCIKCEAPC 
bmy_04326T0/1-186         GYEGSTSWKA ALEDTTTRLL LGAIAVLLFA ILVVMSILAS KGCIKCEAPC 
ENSBTAP00000047979/1-214  GYEGSTSWKA ALEDTTTRLL LGAIAVLLFA ILVVMSILAS KGCIKCEAPC 


                          101                                                150
BACU006746/1-189          PEDWLLYGRK CYFFSEEPRD WNTGRQYCHG HEAALAVIQS QKELEFMFKF 
ENSP00000390661/1-214     PEDWLLYGRK CYFFSEEPRD WNTGRQYCHT HEAVLAVIQS QKELEFMFKF 
bmy_04326T0/1-186         PEDWLLYGRK CYFFSEEPRD WNTGRQYCHG HEAALAVIQS QKELEFMFKF 
ENSBTAP00000047979/1-214  PEDWLLYGRK CYFFSEEPRD WNTGRQYCHS HEAALAVIQS QKELEFMFKF 


                          151                                                200
BACU006746/1-189          TRREPWIGLR RVGDEFHWVN GDPFDPDTCQ REGLDDQCGY NVARDLRIWP 
ENSP00000390661/1-214     TRREPWIGLR RVGDEFHWVN GDPFDPDT-- ---------- ---------- 
bmy_04326T0/1-186         TRREPWIGLR RVGDEFHWVN GDPFDPDT-- ---------- ---------- 
ENSBTAP00000047979/1-214  TRREPWIGLR RVGDEFHWVN GDPFDPDT-- ---------- ---------- 


                          201                                                250
BACU006746/1-189          RLWTHPFP-A RPGNPFTFSR VPMETSNMEG YTTVRVEHTC LGV-PW--GN 
ENSP00000390661/1-214     ------FTIA GPGE-----C VFVEPTRL-- -----VSTEC LMTRPWVCSK 
bmy_04326T0/1-186         ------FPIS GPGE-----C VFVEPTRL-- -----VSTEC LMTRPWVCSK 
ENSBTAP00000047979/1-214  ------FPIA GPGE-----C VFVEPTRL-- -----VSTDC LMTRPWVCSK 


                          251                                                300
BACU006746/1-189          VASN 
ENSP00000390661/1-214     MAYT 
bmy_04326T0/1-186         MAYT 
ENSBTAP00000047979/1-214  MAYT