KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:35 2014 Check: 00 .. Name: ENSBTAP00000048078/1-393 Len: 971 Check: 8060 Weight: 1.00 Name: ENSP00000234371/1-398 Len: 971 Check: 6431 Weight: 1.00 Name: BACU006531/1-814 Len: 971 Check: 4062 Weight: 1.00 Name: bmy_06646T0/1-552 Len: 971 Check: 6102 Weight: 1.00 Name: ENSTTRP00000001386/1-395 Len: 971 Check: 4894 Weight: 1.00 // 1 50 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ---------- ---------- ---------- BACU006531/1-814 ---------- ---------- ---------- ---------- ---------- bmy_06646T0/1-552 MRVINARRLS ASGGSTEPSE ATLQTLWRIP GGRPGGGSLP HPGARSRRAA ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000048078/1-393 ------MQPL SASGPNASWW APANTTVCPG CGANTSDGAI PAPWPVDAWL ENSP00000234371/1-398 ------MHTV ATSGPNASWG APANASGCPG CGANASDGPV PSPRAVDAWL BACU006531/1-814 ------MRAL AASGPNASWW ALANASGCPG CGANDSDGPA PAPWPVDAWL bmy_06646T0/1-552 GRKRAAMRAL ATSGPNASWW ALANASGCPG CGANDSDGPA PAPWPVDAWL ENSTTRP00000001386/1-395 ------MRSL ATSGPNASWW ALANASSCPG CGANDSDGPA PAPWPVDAWL 101 150 ENSBTAP00000048078/1-393 VPLFFGALML LGLTGNSLVI FVICRHKQMR TVTNFYIANL AVTDLTFLLC ENSP00000234371/1-398 VPLFFAALML LGLVGNSLVI YVICRHKPMR TVTNFYIANL AATDVTFLLC BACU006531/1-814 VPLFFGALML LGLAGNSLVI FVICRQKQMR TVTNFYIANL AVTDLTFLLC bmy_06646T0/1-552 VPLFFGALML LGLAGNSLVI FVICRQKQMR TVTNFYIANL AVTDLTFLLC ENSTTRP00000001386/1-395 VPLFFGALML LGLAGNSLVI FVICRQKQMR TVTNFYIANL AVTDLTFLLC 151 200 ENSBTAP00000048078/1-393 CVPFTALLYP LPAWVLGDFM CKFLNYIQQV SVQATCATLT AMSVDRWYVT ENSP00000234371/1-398 CVPFTALLYP LPGWVLGDFM CKFVNYIQQV SVQATCATLT AMSVDRWYVT BACU006531/1-814 CVPFTALLYP LPAWVLGDFM CKFLNYIQQV SVQATCATLT AMSVDRWYVT bmy_06646T0/1-552 CVPFTALLYP LPAWVLGDFM CKFLNYIQQV SVQATCATLT SMSVDRWYVT ENSTTRP00000001386/1-395 CVPFTALLYP LPAWVLGDFM CKFLNYIQQV SVQATCATLT AMSVDRWYVT 201 250 ENSBTAP00000048078/1-393 VFPLRALHQR TPRLALAVSL GIW------- ---------- ---------- ENSP00000234371/1-398 VFPLRALHRR TPRLALAVSL SIW------- ---------- ---------- BACU006531/1-814 VFPLRALHRR TPRLALAVSL SIW------- ---------- ---------- bmy_06646T0/1-552 VFPLRALHRR TPRLALAVSL SIWAGECSAE ATLGRGDKFS CPGLTPHTHT ENSTTRP00000001386/1-395 VFPLRALHRR TPHLALAVSL SIW------- ---------- ---------- 251 300 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ---------- ---------- ---------- BACU006531/1-814 ---------- ---------- ---------- ---------- ---------- bmy_06646T0/1-552 HCLSPGPRSC IWEMDAMAFP ARATEGADTG RRAPRRRSMS AALTLTLTGA ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000048078/1-393 ---------- ---------- ----VGSAVV SAPVFALHRL SSGPRTYCSE ENSP00000234371/1-398 ---------- ---------- ----VGSAAV SAPVLALHRL SPGPRAYCSE BACU006531/1-814 ---------- ---------- ----AGSAAV SAPVLALHRL SPGPRTYCSE bmy_06646T0/1-552 PGRPGPGPPR APRPPGQVFS RACDAGSAAV SAPVLALHRL SPGPRTYCSE ENSTTRP00000001386/1-395 ---------- ---------- ----AGSAAV SAPVLALHRL SPGPRTYCSE 351 400 ENSBTAP00000048078/1-393 AFPSRALERA FALYNLLALY LLPLVATCAC YGAMLRHLGR AAVRPAPAGG ENSP00000234371/1-398 AFPSRALERA FALYNLLALY LLPLLATCAC YAAMLRHLGR VAVRPAPADS BACU006531/1-814 AFPSRSFERA FALYNLLALY LLPLVATCAC YGAMLRHLGR SAVRPAPGDS bmy_06646T0/1-552 AFPSRSFERA FALYNLLALY LLPLVATCAC YGAMLRHLGR SAVRPAPGDS ENSTTRP00000001386/1-395 AFPSRSFERA FALYNLLALY LLPLVATCAC YGAMLRHLGR SAVRPAPGDS 401 450 ENSBTAP00000048078/1-393 ALEGQLMAER AGAVRAKVSR LVAAVVLLFA ACWGPIQLFL LLQALGPAGA ENSP00000234371/1-398 ALQGQVLAER AGAVRAKVSR LVAAVVLLFA ACWGPIQLFL VLQALGPAGS BACU006531/1-814 ALQGQLLAER AGAVRAKVSR LVAAVVLLFA ACWGPIQLFL VLQALGPAGA bmy_06646T0/1-552 ALQGQLLAER AGAVRAKVSR LVAAVVLLFA ACWGPIQLFL VLQALGPAGA ENSTTRP00000001386/1-395 ALQGQLLAER AGAVRAKVSR LVAAVVLLFA ACWGPIQLFL VLQALGPAGA 451 500 ENSBTAP00000048078/1-393 WHPRSYTAYA LKIWAHCMSY CNSALNPLLY AFLGSHFRQA FRRVCPCAPR ENSP00000234371/1-398 WHPRSYAAYA LKTWAHCMSY SNSALNPLLY AFLGSHFRQA FRRVCPCAPR BACU006531/1-814 WHPRSYAAYA LKIWAHCMSY SSSALNPLLY AFLGSHFRQA FRRVCPCAPR bmy_06646T0/1-552 WHPRSYAAYA LKIWAHCMSY SNSALNPLLY AFLGSHFRQA FRRVCSCAPR ENSTTRP00000001386/1-395 WHPRSYAAYA LKIWAHCMSY SNSALNPLLY AFLGSHFRQA FRRVCPCAPR 501 550 ENSBTAP00000048078/1-393 PLPRP----- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 RPRRP----- ---------- ---------- ---------- ---------- BACU006531/1-814 RPRRKPKWEE EEEEELEDDL GDEEDDEEDE DYEDEXXXXX XXXXXXXXXX bmy_06646T0/1-552 RPRR------ ---------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 RPRR------ ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ---------- ---------- ---------- BACU006531/1-814 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVPQLQPPDH GEWTYEEQFK bmy_06646T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000048078/1-393 ---WRPGPSD TAAVHQTQLR R-------LG H----AR--- --------PP ENSP00000234371/1-398 ---RRPGPSD P-AAPHAELL R-------LG SHPAPAR--- --------AQ BACU006531/1-814 QGLWGGGEKG QERTLWAGLR KRMVKRGYSG AAPVPDRDPV TRAASGEGAP bmy_06646T0/1-552 -----SGPSD P-AAPQTELH R-------LT AHQAPAR--- --------TP ENSTTRP00000001386/1-395 -----SGPSD P-AAPQTELH R-------LT AHQAPAR--- --------PP 651 700 ENSBTAP00000048078/1-393 EPKIII---- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 KPG------- ---------- ---------- ---------- ---------- BACU006531/1-814 PPGVIEAWSA APPTDLAGSS SKLVLYELDG DPKRKEFLDD LFSFMQKRGT bmy_06646T0/1-552 KPG------- ---------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 KPG------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ----SSGLA- ---------- ---------- BACU006531/1-814 PVNRIPIMAK QVLDLFMLYV LVTEKGGLVE VINKKLWREI TKGLNLPTSI bmy_06646T0/1-552 ---------- ---------- ----SGGLG- ---------- ---------- ENSTTRP00000001386/1-395 ---------- ---------- ----SGGLG- ---------- ---------- 751 800 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ---------- ---------- ---------- BACU006531/1-814 TSAAFTLRTQ YMKYLYPYEC EKRGLSNPNE LQAAIDSNRR EGRRQSFGGS bmy_06646T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- ---------- ENSP00000234371/1-398 ---------- ---------- ---------- ---------- ---------- BACU006531/1-814 LFAYSPGGAH SMLSSPKLPV SSLGLAASTN GSSITPAPKI KKEEDSAIPI bmy_06646T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000048078/1-393 ---------- ---------- ---------- ---------- -------VKR ENSP00000234371/1-398 ---------- ---------- ---------- ---------- -------ARG BACU006531/1-814 TVPGRLPVSL AGHPVVAAQA VAAQAAVAAQ AAALEQLREK LESGEPPEKK bmy_06646T0/1-552 ---------- ---------- ---------- ---------- -------PRR ENSTTRP00000001386/1-395 ---------- ---------- ---------- ---------- -------PRR 901 950 ENSBTAP00000048078/1-393 PCPLATFDTN L--------- ---------- ---------- ---------- ENSP00000234371/1-398 LCVLGEDNAP L--------- ---------- ---------- ---------- BACU006531/1-814 MALVAEEQQR LMQRALQQNF LAMTAQLPMS IRINSQGSES RQDSAANLTS bmy_06646T0/1-552 LCVLREHAAP L--------- ---------- ---------- ---------- ENSTTRP00000001386/1-395 LCVLREHAAP L--------- ---------- ---------- ---------- 951 1000 ENSBTAP00000048078/1-393 ---------- ---------- - ENSP00000234371/1-398 ---------- ---------- - BACU006531/1-814 TNGSNSISMS VEINGIMYTG C bmy_06646T0/1-552 ---------- ---------- - ENSTTRP00000001386/1-395 ---------- ---------- -