KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:36 2014 Check: 00 .. Name: ENSP00000216733/1-561 Len: 568 Check: 371 Weight: 1.00 Name: ENSBTAP00000048108/1-561 Len: 568 Check: 6684 Weight: 1.00 Name: bmy_13915T0/1-521 Len: 568 Check: 6425 Weight: 1.00 Name: BACU008652/1-561 Len: 568 Check: 7252 Weight: 1.00 Name: ENSTTRP00000010056/1-561 Len: 568 Check: 8799 Weight: 1.00 // 1 50 ENSP00000216733/1-561 MAIATSTQLA RALYDNTA-- ----ESPQEL SFRRGDVLRV -LQREGAGGL ENSBTAP00000048108/1-561 MAIATSAQLA RALYDNTA-- ----ESPQEL SFRRGDVLRV -LQREGAGGL bmy_13915T0/1-521 PRLRRRSRGP RPWCGAAAAE VSETEPGLEL AARKAKAMAI ATSREGAGGL BACU008652/1-561 MAIATSAQLA RALYDNTA-- ----ESPQEL SFRRGDVLRV -LQREGAGGL ENSTTRP00000010056/1-561 MAIATSAQLA RALYDNTA-- ----ESPQEL SFRRGDVLRV -LQREGAGGL 51 100 ENSP00000216733/1-561 DGWCLCSLHG QQGIVPANRV KLLPAGPAPK PSLSPASPAQ PGSPYPAPDH ENSBTAP00000048108/1-561 DGWCLCSLHG QQGIVPANRV KLLPAGPAPK PGLSQVPPTQ PGSPHPAPEH bmy_13915T0/1-521 DGWCLCSLHG QQGIVPANRV KLLPTGPAPK PGLSQVPPAQ PGSPHPAPEH BACU008652/1-561 DGWCLCSLHG QQGIVPANRV KLLPTGPAPK PGLSEVPPAQ PGSPHPAPEH ENSTTRP00000010056/1-561 DGWCLCSLHG QQGIVPANRV KLLPNGPAPK PGLSQVPPAQ PGSPHPAPEH 101 150 ENSP00000216733/1-561 SNEDQEVYVV PPPARPCPTS GPPAGPCPPS PDLIYKIPRA SGTQLAAPRD ENSBTAP00000048108/1-561 GSEDQELYVV PPPARLCPTS RPPTGPCPPS PDPIYKVPRG GGTQLAAPGA bmy_13915T0/1-521 GNEDQ----- ---------- ---------- ---------- ---------- BACU008652/1-561 GNEDQEVYVV PPPARPCPTS GPLAGPCPPS PDPIYKVPRG SGTQQAAPGD ENSTTRP00000010056/1-561 GTEDQEVYVV PPPARPCPTS GPLAAPCPPS PDPIYKVPRG SGTQQAAPGD 151 200 ENSP00000216733/1-561 ALEVYDVPPT ALRVPSSGPY DCPASFSHPL TRVAPQPPGE DDAPYDVPLT ENSBTAP00000048108/1-561 ALEVYDVPPT ALRVPSNGPY DSPASFARPL AQVAPQSLGE DEAPYDVPLA bmy_13915T0/1-521 --EVYDVPPT ALRVPSNGPY DSPASFSRPL AWVVPQSPGE DEAPYDVPLA BACU008652/1-561 ALEVYDVPPT ALRVPSNGPY DSPASFSRPL AWVVPQSPGE DEAPYDVPLA ENSTTRP00000010056/1-561 ALEVYDVPPT ALRVPSNGPY DSPASFSRPL AWVVPQSPGE DEAPYDVPLA 201 250 ENSP00000216733/1-561 PKPPAELEPD LEWEGGREPG PPIYAAPSNL KRASALLNLY EAPEELLADG ENSBTAP00000048108/1-561 PKSPSDLELD LEWEGGREPG PPLYAAPSNL KRASALLNLY EAPEELLADG bmy_13915T0/1-521 PKPQSDLEPD LDWEGGREPG PPLYAAPSNL KRASALLNLY EAPEELLADG BACU008652/1-561 PKPQSDLEPD LDWEGGREPG PPLYAAPSNL KRASALLNLY EAPEELLADG ENSTTRP00000010056/1-561 PKPQSDLEPD LDWEGGREPG PPLYAAPSNL KRASVLLNLY EAPEELLADG 251 300 ENSP00000216733/1-561 EGGGTDEGIY DVPLLGPEAP PSPEPPGALA SHDQDTLAQL LARSPPPPHR ENSBTAP00000048108/1-561 EGGGADEGIY DVPLLGPETP PSPEPLGASA SSDLDTLALL LARSPPPPHR bmy_13915T0/1-521 ESRGTDEGIY DVPLLGPETP PSPEPLAASA SNDPDALALL LARSPPPAHR BACU008652/1-561 ESRGTDEGIY DVPLLGPETP PSPEPLAASA SNDLDALALL LARSPPPAHR ENSTTRP00000010056/1-561 ESGGTDEGIY DVPLLGPETP PSPEPLAASA SNDLDALALL LARSPPPAHR 301 350 ENSP00000216733/1-561 PRLPSAESLS RRPLPALPVP EAPSPSPVPS PAPGRKGSIQ DRPLPPPPPR ENSBTAP00000048108/1-561 PRLPSAESLS RRPLPALPVP EAPSPSPAPS PAPGRKGSIQ DRPLPPPPPR bmy_13915T0/1-521 PRLPSTESLS RRPLPALPVP EAPSPSPAPS PAPGRKGSIQ DRPLPPPPPR BACU008652/1-561 PRLPSAESLS RRPLPALPVP EAPSPSPAPS PAPGRKGSIQ DRPLPPPPPR ENSTTRP00000010056/1-561 PRLPSAESLS RRPLPALPVP EAPSPSPAPS PAPGRKGSIQ DRPLPPPPPR 351 400 ENSP00000216733/1-561 LPGYGGPKVE GDPEGREMED DPAGHHNEYE GIPMAEEYDY VHLKGMDKAQ ENSBTAP00000048108/1-561 LPGYGGPKVE GDPEGREVED HPAGHHNEYE GIPVAEEYDY VHLKGMDKVQ bmy_13915T0/1-521 LPGYGGPKVE GDPEIGEVED HQEGHHNEYE GIPMAEEYDY VHLKGMDKAQ BACU008652/1-561 LPGYGGPKVE GDPEIGEVED HQEGHHNEYE GIPMAEEYDY VHLKGMDKAQ ENSTTRP00000010056/1-561 LPGYGGPKVE GDPEIGEVED HQEGHHNEYE GIPMAEEYDY VHLKGMDKAQ 401 450 ENSP00000216733/1-561 GSRPPDQACT GDPELPERGM PAPQEALSPG EPLVVSTGDL QLLYFYAGQC ENSBTAP00000048108/1-561 EARPPDKASP GDPEQLEREP PEQQEALSPG ESLVLPTGDL QLLHFYAGQC bmy_13915T0/1-521 GARPRDKASP GDPELLERGP SEQQEAPSPG EPLVLPAGDL QLLHFYAGQC BACU008652/1-561 GARARDKASP GDPELLERGP PEQQEAPSPG EPLVLPAGDL QLLHFYAGQC ENSTTRP00000010056/1-561 GARPRDKASP GDPELLERGP PEQQEAPSPG EPLVLPAGDL QLLHFYAGQC 451 500 ENSP00000216733/1-561 QSHYSALQAA VAALMSSTQA NQPPRLFVPH SKRVVVAAHR LVFVGDTLGR ENSBTAP00000048108/1-561 QGHYSTLQAA VAALMSSTQA KQPPHLFVPH GKRALVAAHR LVFVGDTLGR bmy_13915T0/1-521 QGHYSTLQAA VAALMSSTRA NQPPRLFVPH GKQVLVAAHR LVFVGDTLGR BACU008652/1-561 QGHYSTLQAA VAALMSSTRA NQPPRLFVPH GKQVLVAAHR LVFVGDTLGR ENSTTRP00000010056/1-561 QGHYSTLQAA VAALMSSTRA NQPPRLFVPH GKQVLVAAHR LVFVGDTLGR 501 550 ENSP00000216733/1-561 LAASAPLRAQ VRAAGTALGQ ALRATVLAVK GAALGYPSSP AIQEMVQCVT ENSBTAP00000048108/1-561 LAASAPLRAQ VGAAGTALGQ ALRATVLAIK GAALGYPSSP AAEEMAQCVA bmy_13915T0/1-521 LAASTPLRTQ VGAAGTALGQ ALRATVLAVK GAALGYPSGP AAQEMVQCVA BACU008652/1-561 LAASTPLRTQ VGAAGTALGQ ALRATVLAVK GAALGYPSGP AAQEMVQCVA ENSTTRP00000010056/1-561 LAASTPLRAQ VGAAGTALGQ ALRATVLAIK GAALGYPSSP AAQEMVQCVA 551 600 ENSP00000216733/1-561 ELAGQALQFT TLLTSLAP ENSBTAP00000048108/1-561 DLAGQALQFT TLLTSLAP bmy_13915T0/1-521 ELAGRALQFT TLLTSLAP BACU008652/1-561 ELAGRALQFT TLLTSLAP ENSTTRP00000010056/1-561 ELAGRALQFT TLLTSLAR