KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:37 2014 Check: 00 .. Name: BACU001771/1-145 Len: 526 Check: 5455 Weight: 1.00 Name: ENSP00000369100/1-520 Len: 526 Check: 3650 Weight: 1.00 Name: ENSBTAP00000048148/1-514 Len: 526 Check: 9091 Weight: 1.00 Name: bmy_00650T0/1-515 Len: 526 Check: 8677 Weight: 1.00 Name: ENSTTRP00000002960/1-526 Len: 526 Check: 6426 Weight: 1.00 // 1 50 BACU001771/1-145 MPLELTQSRV QKIWIPVDHR PSLPRCCRVE SI-------- ---------- ENSP00000369100/1-520 MPLELTQSRV QKIWVPVDHR PSLPRSCGPK LTNSPTVIVM VGLPARGKTY ENSBTAP00000048148/1-514 MPLELTQSRV QKIWIPVDHR PSLPRTCGPK LTNSPTVIVM VGLPARGKTY bmy_00650T0/1-515 MPLELTQSRV QKIWIPVDHR PSLPRSCGPK LTNSPTVIVM VGLPARGKTY ENSTTRP00000002960/1-526 MPLELTQSRV QKIWIPVDHR PSLPRSCGPK LTNSPTVIVM VGLPARGKTY 51 100 BACU001771/1-145 -------YLN ---------- ---------- ---------- ---------- ENSP00000369100/1-520 ISKKLTRYLN WIGVPTKVFN VGEYRREAVK QYSSYNFFRP DNEEAMKVRK ENSBTAP00000048148/1-514 ISKKLTRYLN WIGVPTKVFN VGEYRREAVK QYSSYNFFRP DNEEAMKVRK bmy_00650T0/1-515 ISKKLTRYLN WIGVPTKVFN VGEYRREAVK QYSSYNFFRP DNEEAMKVRK ENSTTRP00000002960/1-526 ISKKLTRYLN WIGVPTKVFN VGEYRREAVK QYSSYNFFRP DNEEAMKVRK 101 150 BACU001771/1-145 ---------- ---------- ---VESVSTH RERSEV---- ---------- ENSP00000369100/1-520 QCALAALRDV KSYLAKEGGQ IAVFDATNTT RERRHMILHF AKENDFKAFF ENSBTAP00000048148/1-514 QCALAALRDV KSYLTKEGGQ IAVFDATNTT RERRHMILHF AKENDFKVFF bmy_00650T0/1-515 QCALAALRDV KSYLTKEGGQ IAVFDATNTT RERRHMILHF AKENDFKVFF ENSTTRP00000002960/1-526 QCALAALRDV KSYLTKEGGQ IAVFDATNTT RERRHMILHF AKENDFKVFF 151 200 BACU001771/1-145 ---------- ---------- ---------- ---------- ---SGSSLPP ENSP00000369100/1-520 IESVCDDPTV VASNIMEVKI SSPDYKDCNS AEAMDDFMKR ISCYEASYQP ENSBTAP00000048148/1-514 IESVCDDPTV VASNIMEVKI SSPDYKDCNS AEAMDDFMKR INCYEASYQP bmy_00650T0/1-515 IESVCDDPTV VASNIMEVKI SSPDYKDCNS AEAMDDFMKR INCYEASYQP ENSTTRP00000002960/1-526 IESVCDDPTV VASNIMEVKI SSPDYKDCNS AEAMDDFMKR INCYEASYQP 201 250 BACU001771/1-145 --PHPC---- ---PVLLLGR IL-------- ---------- -----PS--- ENSP00000369100/1-520 LDPDKCDRDL SLIKVIDVGR RFLVNRVQDH IQSRIVYYLM NIHVQPRTIY ENSBTAP00000048148/1-514 LDPDKCDRDL SLIKVIDVGR RFLVNRVQDH IQSRIVYYLM NIHVQPRTIY bmy_00650T0/1-515 LDPDKCDRDL SLIKVIDVGR RFLVNRVQDH IQSRIVYYLM NIHVQPRTIY ENSTTRP00000002960/1-526 LDPDKCDRDL SLIKVIDVGR RFLVNRVQDH IQSRIVYYLM NIHVQPRTIY 251 300 BACU001771/1-145 ---------- -----GGTSG GQHLGRH--- ---------- ---------- ENSP00000369100/1-520 LCRHGENEHN LQGRIGGDSG LSSRGKKFAS ALSKFVEEQN LKDLRVWTSQ ENSBTAP00000048148/1-514 LCRHGESEHN LQGKIGGDSG LSSRGRKFAN ALSKFVEEQN LKDLKVWTSQ bmy_00650T0/1-515 LCRHGESEHN LQGKIGGDSG LSSRGRKFAN ALSKFVEEQN LKDLKVWTSQ ENSTTRP00000002960/1-526 LCRHGESEHN LQGKIGGDSG LSSRGRKFAN ALSKFVEEQN LKDLKVWTSQ 301 350 BACU001771/1-145 ---------- ---------- ---------- ---------- ---------- ENSP00000369100/1-520 LKSTIQTAEA LRLPYEQWKA LNEIDAGVCE ELTYEEIRDT YPEEYALREQ ENSBTAP00000048148/1-514 LKSTIQTAEA LQLPYEQWKA LNEIDAGVCE EMTYEEIKDT YPEEYALREQ bmy_00650T0/1-515 LKSTIQTAEA LQLPYEQWKA LNEIDAGVCE EMTYEEIKNT YPEEYALREQ ENSTTRP00000002960/1-526 LKSTIQTAEA LQLPYEQWKA LNEIDAGVCE EMTYEEIKDT YPEEYALREQ 351 400 BACU001771/1-145 -------PTP R------RRL A--------- ------CKGC L--CL----- ENSP00000369100/1-520 DKYYYRYPTG ESYQDLVQRL EPVIMELERQ ENVLVICHQA VLRCLLAYFL ENSBTAP00000048148/1-514 DKYYYRYPTG ESYQDLVQRL EPVIMELERQ ENVLVICHQA VLRCLLAYFL bmy_00650T0/1-515 DKYYYRYPTG ESYQDLVQRL EPVIMELERQ ENVLVICHQA VLRCLLAFFL ENSTTRP00000002960/1-526 DKYYYRYPTG ESYQDLVQRL EPVIMELERQ ENVLVICHQA VLRCLLAYFL 401 450 BACU001771/1-145 --SVDSVSFG TVALVTALPF ----LGIRV- ---------- ---------- ENSP00000369100/1-520 DKSAEEMPYL KCPLHTVLKL TPVAYGCRVE SIYLNVESVC THRERSEDAK ENSBTAP00000048148/1-514 DKSAEEMPYL KCPLHAVLKL TPIAYGCRVE SIYLNVESVS THRERSEDAK bmy_00650T0/1-515 DKSAEEMPYL KCPLHAVLKL TPVAYGCRVE SIYLNVESVS THRERSEDAK ENSTTRP00000002960/1-526 DKSAEEMPYL KCPLHAVLKL TPVAYGCRVE SIYLNVESVS THRERSEDAK 451 500 BACU001771/1-145 ---------- ---LLPARLV ASRHRLPFLS YHASSPTA-- ---------- ENSP00000369100/1-520 KGPNPLMRRN SVTPLASPEP TKKPRINSFE EHVASTSAAL PSCLPPEVPT ENSBTAP00000048148/1-514 KGPNPLMRRN SVTPLASPEP TKKPRINSFE EHVASTSAAL PTCLPPEVPT bmy_00650T0/1-515 KGPNPLMRRN SVTPLASPEP TKKPRINSFE EHVASTSAAL PTCLPPEVPT ENSTTRP00000002960/1-526 KGPNPLMRRN SVTPLASPEP TKKPRINSFE EHVASTSAAL PTCLPPEVPT 501 550 BACU001771/1-145 ---------- ---------- ------ ENSP00000369100/1-520 QLPGQNMKGS RSSADSSRKH ------ ENSBTAP00000048148/1-514 QLPGQPLLGK ACLT------ ------ bmy_00650T0/1-515 QLPGQPLLGK ACFRT----- ------ ENSTTRP00000002960/1-526 QLPGQPLLGK ACLRTVCHIF SKFSPY