KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:38 2014 Check: 00 .. Name: ENSP00000323099/1-791 Len: 805 Check: 9073 Weight: 1.00 Name: ENSBTAP00000048150/1-789 Len: 805 Check: 4176 Weight: 1.00 Name: BACU002420/1-734 Len: 805 Check: 7847 Weight: 1.00 Name: bmy_05974T0/1-767 Len: 805 Check: 4298 Weight: 1.00 Name: ENSTTRP00000016420/1-790 Len: 805 Check: 3075 Weight: 1.00 // 1 50 ENSP00000323099/1-791 MAGTSAPGSK RRSEPPAPRP GPPPGTGHPP SKRARG---- -------FSA ENSBTAP00000048150/1-789 MAGISASGSR RRSGPPAPSP GPPPNTGHPP SKRARG---- ---------I BACU002420/1-734 MSGREG-GKK KPLKQPKKQA KEMDEEDKAF KQKQKEEQKK LEELKAKAAG bmy_05974T0/1-767 MAGIPAPGSR RRSGPPAPSR GPPPSTQHPP SKRARG---- -------FLA ENSTTRP00000016420/1-790 MAGIPAPGSR RRSGPPAPSS GPPSSTQHPP SKRARG---- -------FLA 51 100 ENSP00000323099/1-791 AAAPDPDDPF GAHGDFTADD LEELDTLASQ ALSQCPAAAR DVSSDHKVHR ENSBTAP00000048150/1-789 PATPDPEDPF GLHGDFTADD LEELDTLASQ ALSQCPTTAP DVSNVHKVTR BACU002420/1-734 KGPLDPEDPF GAHGDFTADD LEELDTLASQ ALSQCPNAAP DVSNVRKVPR bmy_05974T0/1-767 AGPPDPEDPF GAHGDFTADD LEELDTLASQ ALSQCPNAAP DVSNVHKVPR ENSTTRP00000016420/1-790 AAPPDPEDPF GAHGDFTADD LEELDTLASQ ALSQCPNAAP DVSNVHKVPR 101 150 ENSP00000323099/1-791 LLDGMSKNPS GKNRETVPIK DNFELEVLQA QYKELKEKMK VMEEEVLIKN ENSBTAP00000048150/1-789 -LDGMSKYPA GKNRESVPVK DNFELEVLQA QYKELKEKMK AMEEEVLIKN BACU002420/1-734 -LDGMSKNPA RKNRESVPVK DNFELELLQA QYKELKE--- ---------- bmy_05974T0/1-767 -SDGMSKNPA RKKRESVPVK DNFELELLQA QYKELKEKMK AMEEEALIKN ENSTTRP00000016420/1-790 -LDGMSKNPS RKNRESVPVK DNFELELLQA QYKELKEKMK AMEEEVLIKS 151 200 ENSP00000323099/1-791 GEIKILRDSL HQTESVLEEQ RRSHFLLEQE KTQALSDKEK EFSKKLQSLQ ENSBTAP00000048150/1-789 GEIKILRDSL HQTESILEEQ RRSHFLLEQE KTQALSEKEK EFSKKLQSLQ BACU002420/1-734 ---------- ---------- ---------- ---------- ----KLQSLQ bmy_05974T0/1-767 GEIKILRDSL HQTESILEEQ RRSHFLLEQE KTQALSDKEK EFSKKLQSLQ ENSTTRP00000016420/1-790 GEIKILRDSL HQTESILEEQ RRSHFLLEQE KTQALSDKEK EFSKKLQSLQ 201 250 ENSP00000323099/1-791 SELQFKDAEM NELRTKLQTS ERANKLAAPS VSHVSPRKNP SVVIKPEACS ENSBTAP00000048150/1-789 SELQFKDAEM NELRTKLQSS ERANKLAVPT VSHVSPRKSP SVVIKPEACS BACU002420/1-734 SELQFKDAEM NELRTKLQSS ERANKLAAPS ISHVSQKH-- -VLHNLE--- bmy_05974T0/1-767 SELQFKDAEM NELRTKLQSS ERANKLAAPS ISHVSPRKSP SVVIKPEACS ENSTTRP00000016420/1-790 SELQFKDAEM NELRTKLQSS ERANKLAAPS ISHVSPRKSP SVVIKPEACS 251 300 ENSP00000323099/1-791 PQFGKTSFPT KESFSANMSL PHPCQTESGY KPLVGRE--D SKPHSLRGDS ENSBTAP00000048150/1-789 PQFGKPSFPT KESFSANKSL PQPCQTEPAY KSPMSREVAE NKVHSLGGGP BACU002420/1-734 ---NHLSXXT KESFSANMSL PHPCQTDPGY KSLMGKE--E NKTHSLGDDP bmy_05974T0/1-767 PQLGKPSFPT KESF------ ---------- ---------K NKTHSLGDDP ENSTTRP00000016420/1-790 PQLGKPSFPT KESFSANMSL PHPCQTDPGY KSLMGKE--E NKTHSLGDDP 301 350 ENSP00000323099/1-791 IKQEEAQKSF VDSWRQRSNT QGSILINLLL KQPLIPGSSL SLCHLLSSSS ENSBTAP00000048150/1-789 IKQEEPQKSL LDSW--RSNN QGSILINLLL KQPLIPGSPL GLCHLLSSCP BACU002420/1-734 IKQEQSQKSP VDSWMQRSNT QGSILINLLL KQPLIPGSSL GLCHLLSSCS bmy_05974T0/1-767 IKQEQSQKSP VDSWMQRSNT QGSILINLLL KQPLIPGSSL GLCHLLSSCS ENSTTRP00000016420/1-790 IKQEQSQKRL IDSWMQRSNT QGSILINLLL KQPLIPGSSL GLCHLLSSCS 351 400 ENSP00000323099/1-791 ESPAGTPLQP PGFGSTLAGM SGLRTTGSYD GSFSLSALRE AQNLAFTGLN ENSBTAP00000048150/1-789 EAPAGTQFQL PGLGSTLTGI SSLRTTGPRD GSFPVSALRE AQHMALTGLN BACU002420/1-734 EAPTGTLFQL PGLGSTLTGI SSLRTTGSCD GSFPLLALRE AQNLALTGLN bmy_05974T0/1-767 EAPTGTLFQL PGLGSTLTGI SSLRTTGSCD GSFPLLALRE AQNLALTGLN ENSTTRP00000016420/1-790 EAPTGTLFQL PGLGSTLTGI SSLRTTGSCD GSFPLLALRE AQNLALTGLN 401 450 ENSP00000323099/1-791 LVARN-ECSR DGDPAEGGRR AFPLCQLPGA VHFLPLVQFF IGLHCQALQD ENSBTAP00000048150/1-789 LVARNEEGSS DRDPAEGGGR AFPLHRLPGA VHLLPLVQFF IGLHCQALQD BACU002420/1-734 LVARN-EGSC DRDPAEGGGR AFPLCQLPGA VHLLPLVQFF IGLHCQALQD bmy_05974T0/1-767 LVARN-EGSC DRDPAEGGGR AFPLCQLPGA VHLLPLVQFF IGLHCQALQD ENSTTRP00000016420/1-790 LVARN-EGSC DRDPAEGGGR AFPLCQLPGA VHLLPLVQFF IGLHCQALQD 451 500 ENSP00000323099/1-791 LAAAKRSGAP GDSPTHSSCV SSGVETNPED SVCILEGFSV TALSILQHLV ENSBTAP00000048150/1-789 LAAAKRSGAP ADPPTHPSRV SPGVEASPED SLYNLEGFSV AALSVLQHLV BACU002420/1-734 LAATKRSGAP ADSPTHPSCV SSGVEASPED SLCNLEGFSV ASLSVLQHLV bmy_05974T0/1-767 LAATKRSGAP ADSPTHPSCV SSGVEASPED SLCNLEGFSV ASLSVLQHLV ENSTTRP00000016420/1-790 LAAAKRSGAP ADSPTHPSCV SSGVEASPED SLCNLEGFSV ASLSVLQHLV 501 550 ENSP00000323099/1-791 CHSGAVVSLL LSGVGADSAA GEGNRSLVHR LSDGDMTSAL RGVADDQGQH ENSBTAP00000048150/1-789 CHSGAVVCLL LSGAGAEPAA GEGDQSQVHG HSHGDATSAP EGLAKDQGQH BACU002420/1-734 CHSGAVICLL LSGAGADSAP REGDQSLVDG HGPGDVTSAP AGLAGDQGQH bmy_05974T0/1-767 CHSGAVICLL LSGAGADSAP REGDQSLVDG HGPGDVTSAP AGLAGDQGQH ENSTTRP00000016420/1-790 CHSGAVICLL LSGAGADSAA REGDQSLVDG HGRGDVTSAP GRLAGDQGQH 551 600 ENSP00000323099/1-791 PLLKMLLHLL AFSSAATGHL QASVLTQCLK VLVKLAENTS CDFLPRFQCV ENSBTAP00000048150/1-789 PLLKMLLHLL ASSSAATGHL QASVLSQCLK VLVELAENAS FDFLPRFQCV BACU002420/1-734 PLLKMLLQLL AFSSAATGHL KASVLSQCLK VLVKLAENAS FDFLPRFQCV bmy_05974T0/1-767 PLLKMLLQLL AFSSAATGHL KASVLSQCLK VLVKLAENAS FDFLPRFQCV ENSTTRP00000016420/1-790 PLLKMLLQLL AFSSAATGHL KASVLSQCLK VLVKLAENAS FDFLPRFQCA 601 650 ENSP00000323099/1-791 FQVLPKCLSP ETPLPSVLLA VELLSLLADH DQLAPQLCSH SEGCLLLLLY ENSBTAP00000048150/1-789 FRVLPQCLRP ETPLPSVLLT VELLSLLVDH EKLAPQLCSH SEGCLLLLLY BACU002420/1-734 FRVLPQCLRP ETPLPSVLLT IELLSLLVDH EKLAPQLCSH PEGCLLLLLY bmy_05974T0/1-767 FRVLPQCLRP ETPLPSVLLT TELLSLLVDH EKLAPQLCSH PEGCLLLLLY ENSTTRP00000016420/1-790 FRVLPQCLRP ETPLPSVLLT IELLSLLVDH EKLAPQLCSH PEGCLLLLLY 651 700 ENSP00000323099/1-791 MYITSRPDRV ALETQWLQLE QEVVWLLAKL GVQSPLPPVT GSNCQCNVEV ENSBTAP00000048150/1-789 MYITSRPDRA ASETQWLQLE QEAVWLLAKL GVQSPSSPVT ASSCQCNVEV BACU002420/1-734 MYITSRPDKA ASETQWLQLE QEAVWLLAKL AVQSPSSPVT GSSCQCNVEV bmy_05974T0/1-767 MYITSRPDKA ASETQWLQLE QEAVWLLAKL AVQSPSSPVT GSSCQCNVEV ENSTTRP00000016420/1-790 MYITSRPDKA ASETQWLQLE QEAVWLLAKL AVQSPSSPVT GSSCQCNVEV 701 750 ENSP00000323099/1-791 VRALTVMLHR QWLTVRRAGG PPRTDQQRRT VRCLRDTVLL LHGLSQKDKL ENSBTAP00000048150/1-789 VRALTVVLHR QWLTVRRARG PPRTEQQRRT VRCLRDTVLL LHGLSQKDKL BACU002420/1-734 VRALTVMLHR QWLTVRRAGG PPRTDQQKRT VRCLRDTVLL LHSLSQKDKL bmy_05974T0/1-767 VRALTVMLHR QWLTVRRAGG PPRTDQQKRT VRCLRDTVLL LHSLSQKDKL ENSTTRP00000016420/1-790 VRALTVMLHR QWLTVRRAGG PPRTDQQKRT VRCLRDTVLL LHSLSQKDKL 751 800 ENSP00000323099/1-791 FMMHCVEVLH QFDQVMPGVS MLIRGLPDVT DCEEAALDDL CAAETDVEDP ENSBTAP00000048150/1-789 FTVHCVEVLH QYDQVMPGVS TLIRGLPDVT DCEEAALEDL CAVETDMDEP BACU002420/1-734 FTVHCVEVLH QYDQVMPGVS MLIRGLPDVT GCEEAALDDL CAAEADVDDP bmy_05974T0/1-767 FTVHCVEVLH QYDQVMPGVS MLIRGLPDVT GCEEAALDDL CAAEADVDDP ENSTTRP00000016420/1-790 FTVHCVEVLH QYDQVMPGVS MLIRGLPDVT GCEEAALDDL CAAEADVDDP 801 850 ENSP00000323099/1-791 EVECG ENSBTAP00000048150/1-789 EMDCG BACU002420/1-734 EMACG bmy_05974T0/1-767 EMDCG ENSTTRP00000016420/1-790 EMDCG