KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:38 2014 Check: 00 .. Name: BACU005472/1-227 Len: 350 Check: 4649 Weight: 1.00 Name: ENSP00000326272/1-345 Len: 350 Check: 1723 Weight: 1.00 Name: ENSBTAP00000048152/1-346 Len: 350 Check: 6354 Weight: 1.00 Name: bmy_06751T0/1-345 Len: 350 Check: 1793 Weight: 1.00 Name: ENSTTRP00000005596/1-345 Len: 350 Check: 2036 Weight: 1.00 // 1 50 BACU005472/1-227 ---MFDR--- ---------- --SQYPYNCF NYDADDYPAG SSDEKRLTRP ENSP00000326272/1-345 MSHLFDPRLP ALAASPMLYL YGPERPGLPL AFAPAAALAA SGRAETPQKP ENSBTAP00000048152/1-346 MSHLFSPRLP ALATSPMLYL YGPERPGLPL AFAPAGALAA SGRVEPPQKP bmy_06751T0/1-345 MSHLFSPRLP ALAASPMLYL YGPERPGLPL AFAPAAALAA SGRVEPPQKP ENSTTRP00000005596/1-345 MSHLFSPRLP ALAASPMLYL YGPERPGLPL AFAPAAALAA SGRVEPPQKP 51 100 BACU005472/1-227 AYSYIALIAM AIQQSPTGKV TLSGIYDFIM RKFPYYRANQ RAWQNSIRHN ENSP00000326272/1-345 PYSYIALIAM AIQDAPEQRV TLNGIYQFIM DRFPFYHDNR QGWQNSIRHN ENSBTAP00000048152/1-346 PYSYIALIAM AIQDAPEQRV TLNGIYQFIM DRFPFYHDNR QGWQNSIRHN bmy_06751T0/1-345 PYSYIALIAM AIQDAPEQRV TLNGIYQFIM DRFPFYQDNR QGWQNSIRHN ENSTTRP00000005596/1-345 PYSYIALIAM AIQDAPEQRV TLNGIYQFIM DRFPFYQDNR QGWQNSIRHN 101 150 BACU005472/1-227 LSLNSCFVKV PRTHGHEKGK GNYWTFAGGC ESLLDLFENG NYRRRRR--R ENSP00000326272/1-345 LSLNDCFVKV PREKGR-PGK GSYWTLDPRC ---LDMFENG NYRRRKRKPK ENSBTAP00000048152/1-346 LSLNDCFVKV PREKGR-PGK GSYWTLDPRC ---LDMFENG NYRRRKRKPK bmy_06751T0/1-345 LSLNDCFVKV PREKGR-PGK GSYWTLDPRC ---LDMFENG NYRRRKRKPK ENSTTRP00000005596/1-345 LSLNDCFVKV PREKGR-PGK GSYWTLDPRC ---LDMFENG NYRRRKRKPK 151 200 BACU005472/1-227 RGPKREEARG TRA------- ---ADAEAPR GPPEPATARG N-----PVPR ENSP00000326272/1-345 PGPGAPEAKR PRAETHQRSA EAQPEAGSGA GGSGPAISRL QAAPAGPSPL ENSBTAP00000048152/1-346 PGPGGPEAKR VRAETQERGA EAPPEVQSAG GRPRPATPIQ ERAPARPSPL bmy_06751T0/1-345 PGPGAPEAKR ARAELQERGA EAQPEVGSGG ARPRPATPIH EGAPARPSPL ENSTTRP00000005596/1-345 PGPGAPEAKR ARAELQERGA EAQPEVGRGG ARPRSATPIH EGAPARPSPL 201 250 BACU005472/1-227 REAPT----- -----PASPA ---------- ---ALG---- ---------- ENSP00000326272/1-345 LDGPS-PPAP LHWPGTASPN EDAGDAAQGA AAVAVGQAAR TGDGPGSPLR ENSBTAP00000048152/1-346 REASSPPPAS LPWPRPGSPE GDAGDTLQGA AAVAVGQPER TVDGRGTPPR bmy_06751T0/1-345 REGSS-PPAS LHWPRPASPS GDAGDALQGA AAVAASQPAR TVDGSRSPPR ENSTTRP00000005596/1-345 REGSS-PPAS LHWPRPASPS GDAGDALQGA AAVAASQPAR TVDGSRSPPR 251 300 BACU005472/1-227 -------REA HRDIKFSIDY ILS------- --------AP DPFPG----- ENSP00000326272/1-345 PASRSSPKSS DKSKSFSIDS ILAGKQGQKP PSGDELLGGA KPGPGGRLGA ENSBTAP00000048152/1-346 PASRSSPKSS DKSKSFSIDS ILARRQGQKP TGGGELLGVA KQGPGGCLGA bmy_06751T0/1-345 PASRSSPKSS DKSKSFSIDS ILAGRQGQKP AGGGELLGGA KQGPGGCLGA ENSTTRP00000005596/1-345 PASRSSPKSS DKSKSFSIDS ILAGRQGQKP AGGGELPGGA KQGPGGCLGA 301 350 BACU005472/1-227 --------LR SPYAQAGRH- PRLEAQQMNL HLWTM----- ---------- ENSP00000326272/1-345 SLLAASSSLR PPFNASLMLD PHVQGGFYQL GIPFLSYFPL QVPDTVLHFQ ENSBTAP00000048152/1-346 SLLATSSSLR PPFNASLMLD PHVQGGFYQL GIPFLSYFPL QLPEAVLHFQ bmy_06751T0/1-345 SLLATSSGLR PPFNASLMLD PHVQGGFYQL GIPFLSYFPL QLPDTVLHFQ ENSTTRP00000005596/1-345 SLLATSSGLR PPFNASLMLD PHVQGGFYQL GIPFLSYFPL QLPDTVLHFQ