KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:40 2014 Check: 00 .. Name: ENSTTRP00000014321/1-1186 Len: 1190 Check: 5565 Weight: 1.00 Name: ENSP00000359292/1-1186 Len: 1190 Check: 2244 Weight: 1.00 Name: ENSBTAP00000048207/1-1054 Len: 1190 Check: 8601 Weight: 1.00 Name: bmy_17581T0/1-1026 Len: 1190 Check: 7662 Weight: 1.00 Name: BACU012393/1-1168 Len: 1190 Check: 8361 Weight: 1.00 // 1 50 ENSTTRP00000014321/1-1186 MTRRCMPARP GFPSSPAPGS SPPRCHLRPG STAPAAAGKR TESPGDRKQS ENSP00000359292/1-1186 MTRRCMPARP GFPSSPAPGS SPPRCHLRPG STAHAAAGKR TESPGDRKQS ENSBTAP00000048207/1-1054 MTRRCMPARP GFPSSPAPGS SPPRCHLRPG STVPAAAGKK TERPGDRKQS bmy_17581T0/1-1026 MTRRCMPARP GFPSSPAPGS SPPRCHLRPG STAPAAAGKR TESPGDRKQS BACU012393/1-1168 MTRRCMPARP GFPSSPAPGS SPPRCHLRPG STAPAAAGKR TESPGDRKQS 51 100 ENSTTRP00000014321/1-1186 IIDFFKPASK QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359292/1-1186 IIDFFKPASK QDRHMLDSPQ KSNIKYGGSR LSITGTEQFE RKLSSPKESK ENSBTAP00000048207/1-1054 IIDFFKPASK QDRRMLDSPQ KSNIKYGESG LSISGTEQFE RKLSSPKSSK bmy_17581T0/1-1026 IIDFFKPASK QDRHMLDSPQ KSNIKYGESG LSISGTEQFE RKLSSPKRSK BACU012393/1-1168 IIDFFKPASK QDRHMLDSPQ KSNIKYGESG LSISGTEQFE RKLSSPKRSK 101 150 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-XXXXXXX ENSP00000359292/1-1186 PKRVPPEKSP IIEAFMKGVK EHHEDHGIHE SRRPCLSLAS KYLAKGTNIY ENSBTAP00000048207/1-1054 PKRVPSEKSP VLEAFIKGVK EHHRDRGVHE SRQPCVSLDT KY-SKAVTKY bmy_17581T0/1-1026 PKRVPSEKSP VLEAFMKGVK EHHRDHGVHE SHQPCVSLAT KC-PKAVTKY BACU012393/1-1168 PKRVPSEKSP VLEAFMKGVK EHHRDHGVHE SRQPCVSLAT KC-PKAVTKY 151 200 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359292/1-1186 VPSSYHLPKE MKSLKKKHRS PERRKSLFIH ENN-EKNDRD RGKTNADSKK ENSBTAP00000048207/1-1054 VPPSYLLSKE T---KKKHQS PEGRKSHFIH ENSREKNDGN RGRISADSKK bmy_17581T0/1-1026 VPPSYLLSKE T---KKKHQS PEGRKSHFIH ENNREKNDGD RGKISADSKK BACU012393/1-1168 VPPSYLLSKE T---KKKHQS PEGRKSHFIH ENSREKNDGD RGKISADSKK 201 250 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXLSSR SSLSRHHPGE SPLGAKFQLS LASYCREREL ENSP00000359292/1-1186 QTTVAEADIF NNSSRSLSSR SSLSRHHPEE SPLGAKFQLS LASYCREREL ENSBTAP00000048207/1-1054 QATVTEADIF KNSSRSLSSR SSLSRHHPGE SPLGAKFQLS LASYCREREL bmy_17581T0/1-1026 QAAVTEADIF KNSSRSLSSR SSLSRHHPGE SPLGAKFQLS LASYCREREL BACU012393/1-1168 QAAVTEADIF KNSSRSLSSR SSLSRHHPGE SPLGAKFQLS LASYCREREL 251 300 ENSTTRP00000014321/1-1186 KRLRREQMEQ RINSENSFSA ASTLSLKSSS IGRRCKPRQE QSKQNDVTAG ENSP00000359292/1-1186 KRLRKEQMEQ RINSENSFSE ASSLSLKSS- IERKYKPRQE QRKQNDIIPG ENSBTAP00000048207/1-1054 KRLRREQMEQ RINSENSFSE ASNLSLKSSS IERKCKPRQE LSKQNDVTAG bmy_17581T0/1-1026 KRLRREQMEQ RINSENSFSA ASTLSLKSSS IGRRCKPRQE QSKQNDVTAG BACU012393/1-1168 KRLRREQMEQ RINSENSFSA ASTLSLKSSR LGRRCKPRQE QSKQNDVTAG 301 350 ENSTTRP00000014321/1-1186 NSNLSNLENG PLSRKRSSSD SWELASXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359292/1-1186 KNNLSNVENG HLSRKRSSSD SWEPTSAGSK QNKFPEKRKR NSVDSDLKST ENSBTAP00000048207/1-1054 NSNLSNLENG HLSRKRSSSD SWGPTS-GSK QNKFPDKRKR NSVDSDLKST bmy_17581T0/1-1026 NSNLSNLENG PLSRKRSSSD SWEPASAGSK QNKFPDKRKR NSVDSDLKST BACU012393/1-1168 NSNLSNLENG PLSRKRSSSD SWEPASAGSK QNKFPDKRKR NSVDSDLKST 351 400 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359292/1-1186 RESMIPKARE SFLEKRPDGP HQKEKFIKHI ALKTPGDVLR LEDISKEPSD ENSBTAP00000048207/1-1054 RESIMPKAKE SFLEKRPDGP HQKEKFIKHI ALKTPGDVLR LEDISKDPSE bmy_17581T0/1-1026 RESIMPKAKE SFLEKRPDGP HQREKFIKHI ALKTPGGVLR LEDISKEPNE BACU012393/1-1168 RESIMPKAKE SFLEKRPDGP HQREKFIKHI ALKTPGGVLR LEDISKEPNE 401 450 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000359292/1-1186 ETDGSSAGLA PSNSGNSGHH STRNSDQIQV AGTKETKMQK PHLPLSQEKS ENSBTAP00000048207/1-1054 EADCSSAGLT PT---NSGHQ -IRGSDQNRV ASTKETKIPK PHLSLPQEKS bmy_17581T0/1-1026 EADCSSAGLA PS---NSGHH SSRNSDQIRV ASTKETKIQK PHLSLPQEKS BACU012393/1-1168 EADCSSAGLA PS---NSGHH SSRNSDQIRV ASTKETKIQK PHLSLPQEKS 451 500 ENSTTRP00000014321/1-1186 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP LNAKNCTLPV ENSP00000359292/1-1186 AIKKASNLQK NKTASSTTKE KETKLPLLSR VPSAGSSLVP LNAKNCALPV ENSBTAP00000048207/1-1054 AVKKASNLQK NKTASSVASQ ETKLLPLLSH VPSAGSSRVP LNAKNCTLPV bmy_17581T0/1-1026 AVKKASNLQK NKTASSVASQ ETKLLPLLSH VPSAGSSRVP LNAKNCTLPV BACU012393/1-1168 AVKKASNLQK NKTASSVASQ ETKLLPLLSH VPSAGSSRVP LNAKNCTLPV 501 550 ENSTTRP00000014321/1-1186 RKKDKERSSS KECSGHSTES SKHKEHKAKT NKADSNVSTG KICGGSLRSE ENSP00000359292/1-1186 SKKDKERSSS KECSGHSTES TKHKEHKAKT NKADSNVSSG KISGGPLRSE ENSBTAP00000048207/1-1054 PKKDKERSSP KECSGHSTES SKHKEHKAKT NKADSNISSG KISEGSLRSE bmy_17581T0/1-1026 PKKDKERSSS KECSGHSTES SKHKEHKAKT NKADSNVXTG KICGGSLRSE BACU012393/1-1168 PKKDKERSSS KECSGHSTES SKHKEHKAKT NKSDSNVSTG KICGGSLHSE 551 600 ENSTTRP00000014321/1-1186 YGTPTKSPPA ALEVVPCIPS PTAPSDKAPS DKESSGNSNA GSNALKRKLR ENSP00000359292/1-1186 YGTPTKSPPA ALEVVPCIPS PAAPSDKAPS EGESSGNSNA GSSALKRKLR ENSBTAP00000048207/1-1054 YGTPTKSPPA ALEVVPCIPS PSAPSDKAPS DKESSGNSNA GSSALKRKLR bmy_17581T0/1-1026 YGTPTKSPPA ALEVVPCIPS PTAPSDKAPS DKESSGNSNA GSNALKRKLR BACU012393/1-1168 YGTPTKSPPA ALEVVPCIPS PTAPSDKAPS DKESSGNSNA GSNALKRKLR 601 650 ENSTTRP00000014321/1-1186 GDFDSDEESL GYNLDSDEEE ETLKSLEEIM ALNFNQTPAT TGKPPALSKG ENSP00000359292/1-1186 GDFDSDEESL GYNLDSDEEE ETLKSLEEIM ALNFNQTPAA TGKPPALSKG ENSBTAP00000048207/1-1054 GDFDSDEESL GYNLESDEEE ETLKSLEEIM ALNFNQTPTA TGKPPALSKG bmy_17581T0/1-1026 GDFDSDEESL GYNLDSDEEE ETLKSLEEIM ALNFNQTPAT TGKPPALSKG BACU012393/1-1168 GDFDSDEESL GYNLDSDEEE ETLKSLEEIM ALNFNQTPAT TGKPPALSKG 651 700 ENSTTRP00000014321/1-1186 LRSQSSDYTE HVHSGTYTNT LERLVKEMED TQRLDELQKQ LQEDIRQGRG ENSP00000359292/1-1186 LRSQSSDYTG HVHPGTYTNT LERLVKEMED TQRLDELQKQ LQEDIRQGRG ENSBTAP00000048207/1-1054 LRSQSSDYTE HAHSGTYTNT LERLVKEMED THRLDELQKQ LQEDIRQGRG bmy_17581T0/1-1026 LRSQSSDYTE HVHSGTYTNT LERLVKEMED TQR------- ---------- BACU012393/1-1168 LRSQSSDYTE HVHSGTYTNT LERLVKEMED TQRLDELQKQ LQEDIRQGRG 701 750 ENSTTRP00000014321/1-1186 IKSPIRIGDQ DSTDDEDGLL EEHREFLKKF SVTIDAIPDH HPGEEIFNFL ENSP00000359292/1-1186 IKSPIRIGEE DSTDDEDGLL EEHKEFLKKF SVTIDAIPDH HPGEEIFNFL ENSBTAP00000048207/1-1054 IKSPIRIGDH DSTDDEDGLL EEHKEFLKKF SITIDAIPDH HPGEEIFNFL bmy_17581T0/1-1026 ---------- ---------- ----EFLKKF SVTIDAIPDH HPGEEIFNFL BACU012393/1-1168 IKSPIRIGDQ DSTDDEDGLL EEHREFLKKF SVTIDAIPDH HPGEEIFNFL 751 800 ENSTTRP00000014321/1-1186 NSGKIFNQYT LDLRDSGFIG QSAVEKLILK SGKTDQIFLT TQGFLTSAYH ENSP00000359292/1-1186 NSGKIFNQYT LDLRDSGFIG QSAVEKLILK SGKTDQIFLT TQGFLTSAYH ENSBTAP00000048207/1-1054 NSGKIFSQYT LDLRDSGFIG QSAVEKLILK SGKTDQIFLT TQGFLTSAYH bmy_17581T0/1-1026 NSGKIFNQYT LDLRDSGFIG QSAVEKLILK SGKTDQIFLT TQGFLTSAYH BACU012393/1-1168 NSGKIFNQYT LDLRDSGFIG QSAVEKLILK SGKTDQIFLT TQGFLTSAYH 801 850 ENSTTRP00000014321/1-1186 YVQCPVPVLK WLFRMMSVHT DCIVSVQILS TLMEITIRND TFSDSPVWPW ENSP00000359292/1-1186 YVQCPVPVLK WLFRMMSVHT DCIVSVQILS TLMEITIRND TFSDSPVWPW ENSBTAP00000048207/1-1054 YVQCPVPVLK WLFRMMSVHT DCIVSMQILS TLMEITIRND TFSDSPIWPW bmy_17581T0/1-1026 YVQCPVPVLK WLFR------ -------ILS TLMEITIRND TFSDSPVWPW BACU012393/1-1168 YVQCPVPVLK WLFRMMSVHT DCIVSMQILS TLMEITIRND TFSDSPVWPW 851 900 ENSTTRP00000014321/1-1186 IPSLSDIAAV FFNMGIDFKS LFPLENLQPD FNEDDLVSET QMTLGVKGSE ENSP00000359292/1-1186 IPSLSDVAAV FFNMGIDFRS LFPLENLQPD FNEDYLVSET QTTSRGKESE ENSBTAP00000048207/1-1054 IPSLSDIAAV FFNMGIDFRS LFPLENLQPD FNEDNLVSET QMTLGVKENE bmy_17581T0/1-1026 IPSLSDIAAV FFNMGIDFKS LFPLENLQPD FNEDDLVSET QMTLGVKGSE BACU012393/1-1168 IPSLSDVAAV FFNMGIDFKS LFPLENLQPD FNEDDLVSET QTTLGVKGSE 901 950 ENSTTRP00000014321/1-1186 DSSCKPIFSS LPETNILNVV KFLGLCTSIH PEGYQDCEIM LLILMLFKMS ENSP00000359292/1-1186 DSSYKPIFST LPETNILNVV KFLGLCTSIH PEGYQDREIM LLILMLFKMS ENSBTAP00000048207/1-1054 DSSYKPIFSS LPETNILNVV KFLGLCTSIH PEGYQDREIM LLILMLFKMS bmy_17581T0/1-1026 DSSCKPIFSS LPETNILNVV KFLGLCTSIH PEGYQDCEIM LLILMLFKMS BACU012393/1-1168 DSSCKPIFSS LPETNILNVV KFLGLCTSIH PEGYQDCEIM LLILMLFKMS 951 1000 ENSTTRP00000014321/1-1186 LEKQLKQIPL VDFQSLLINL MKNIRDWNTK VPELCLAINE LSSHPHNLLW ENSP00000359292/1-1186 LEKQLKQIPL VDFQSLLINL MKNIRDWNTK VPELCLGINE LSSHPHNLLW ENSBTAP00000048207/1-1054 LEKELKQIPL VDFQSLLINL MKNIRDWNTK VPELSLAINE LSTHPHNLLW bmy_17581T0/1-1026 LEKQLKQIPL VDFQSLLINL MKNIRDWNTK VPELCLAINE LSSHPHNLLW BACU012393/1-1168 LEKQLKQIPL VDFQSLLINL MKNIRDWNTK VPELCLAINE LSSHPHNLLW 1001 1050 ENSTTRP00000014321/1-1186 LVQLVPNWTS RGRQLRQ-CL SLVIISKLLD EKHEDILNAN NLQISVLHRY ENSP00000359292/1-1186 LVQLVPNWTS RGRQLRQ-CL SLVIISKLLD EKHEDVPNAS NLQVSVLHRY ENSBTAP00000048207/1-1054 LVQLVPNWTS RGRQLRQ-CL SLVIISKLLD EKREDIPNVN NLQISVLHRY bmy_17581T0/1-1026 LVQLVPNWTS RGRVVFIPCI CFT------- ---------- ---------- BACU012393/1-1168 LVQLVPNWTS RGRQLRQ-CL SLVIISKLLD EKHEDIPNAN NLQISVLHRY 1051 1100 ENSTTRP00000014321/1-1186 LVQMKPSDLL KKMVLKKRAE QPNGTIDDSL HLELEKQAYY LTYILLHLVG ENSP00000359292/1-1186 LVQMKPSDLL KKMVLKKKAE QPDGIIDDSL HLELEKQAYY LTYILLHLVG ENSBTAP00000048207/1-1054 LVQMKPSDLL KKMV------ ---------- ---------- ---------- bmy_17581T0/1-1026 ---------- ---------- ---------- ---------- ---------- BACU012393/1-1168 LVQMKPSDLL KKMVLKKRAE QPNGTIDDSL HLELEKQAYY LTYILLHLVG 1101 1150 ENSTTRP00000014321/1-1186 EVSCSHSFSS GQRKHFVHLC GALEKHVKCD IREDARLFYR TKVKDLVARI ENSP00000359292/1-1186 EVSCSHSFSS GQRKHFVLLC GALEKHVKCD IREDARLFYR TKVKDLVARI ENSBTAP00000048207/1-1054 ---------- ---------- ---------- ---------- ---------- bmy_17581T0/1-1026 ---------- --QKHFVHLC GALEKHVKCD IREDARLFYR TKVKDLVARI BACU012393/1-1168 EVSCSHSFSS GQRKHFVHLC GALEKHVKCD IREDARLFYR TKVKDLVARI 1151 1200 ENSTTRP00000014321/1-1186 HGKWQEIIQN CRPTQVSF-Y TVSFILSSFA KCYSSYCKK- ENSP00000359292/1-1186 HGKWQEIIQN CRPTQVSFCY TISCILNSFA EWHSSYCLK- ENSBTAP00000048207/1-1054 ---------- ---------- ---------- ---------- bmy_17581T0/1-1026 HGKWQEIIQN CRPTQ----- ---------G QLHDFWVPDS BACU012393/1-1168 HGKWQEIIQN CRPTQ----- ---------G QLHDFWVPDS