KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:42 2014 Check: 00 .. Name: ENSP00000374145/1-517 Len: 986 Check: 7491 Weight: 1.00 Name: ENSBTAP00000048242/1-519 Len: 986 Check: 7477 Weight: 1.00 Name: ENSTTRP00000010342/1-518 Len: 986 Check: 4500 Weight: 1.00 Name: bmy_18154T0/1-983 Len: 986 Check: 8648 Weight: 1.00 Name: BACU010983/1-163 Len: 986 Check: 7605 Weight: 1.00 // 1 50 ENSP00000374145/1-517 MHGGQGPLLL LLLLAVC--- ---------- ---------- ---------- ENSBTAP00000048242/1-519 MCGGQRPLFL LPLLAVC--- ---------- ---------- ---------- ENSTTRP00000010342/1-518 MHGGQRPLLL LSLLAVY--- ---------- ---------- ---------- bmy_18154T0/1-983 MEGPVLTLGL LAALVVCGPP RHAPLPSPPT WGSLSQRQAH LPTSHCHFSL BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 EGPTPRGPVE AQQDLRVASF PGPSPRPSPG SWGLNEEERL IRHLFEEKQY BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 DQELRPTAHK EETVEVSLAL TLSNLISLGW TDSRLKWDAK DFGNISVLRL BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 PSDMVWLPEI VLENNNDGSF QISYSCNVLI YPSGYVYWLP PAIFRSSCPI BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 SVTYFPFDWQ NCSLKFSSLK YTAKEITLSL KQDEEDGRYY PVEWIIIDPE BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 GFTENGEWEI VHRPARINVD PSASLDSPSR QDVTFYLIIR RKPLFYVINI BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 LVPCVLISFM INLVFYLPAD FCLPAAHLQE AASHIHGHPP HRQLFLETLP BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 EVLHMSRPAE DGPSPGTLIR RSSSLGYISK AEEYFSLKSR SDLMFEKQSE BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000374145/1-517 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048242/1-519 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010342/1-518 ---------- ---------- ---------- ---------- ---------- bmy_18154T0/1-983 RHGLARRLTT ARERLLESDS PHSGPTLPVC GDTHHGGGHS LDLPAGRLQP BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000374145/1-517 ---------- ---------- ---------- ----LGAQGR NQEERLLADL ENSBTAP00000048242/1-519 ---------- ---------- ---------- ----LGAKGR NQEERLLGDL ENSTTRP00000010342/1-518 ---------- ---------- ---------- ----LGAQGR SQEERLLRDL bmy_18154T0/1-983 ASTSAFPWGP LLLPGAGQAL HLEWPLYPGS PLSVAGAQGR NQEERLLGDL BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000374145/1-517 MQNYDPNLRP AERDSDVVNV SLKLTLTNLI SLNEREEALT TNVWIEMQWC ENSBTAP00000048242/1-519 MQGYNPHLRP AEHDSDVVNV SLKLTLTNLI SLNEREEALT TNVWIEMQWC ENSTTRP00000010342/1-518 MHSYVPHLRP AKHDSDVVNV SLKLTLTNLI SLNEREEALT TNVWIEMQWC bmy_18154T0/1-983 MHSYVPHLRP AKHDSDVVNV SLKLTLTNLI SLNEREEALT TNVWIEMQWC BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000374145/1-517 DYRLRWDPRD YEGLWVLRVP STMVWRPDIV LENNVDGVFE VALYCNVLVS ENSBTAP00000048242/1-519 DYRLRWDPRD YGGLWVLRVP STMVWRPDIV LENNVDGVFE VALYCNVLVS ENSTTRP00000010342/1-518 DYRLRWDPRD YDGLWVLRVP STMVWRPDVV LENNVDGVFE VALYCNVLVS bmy_18154T0/1-983 DYRLRWDPRD YDGLWVLRVP STMVWRPDIV LENNVDGVFE VALYCNVLVS BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000374145/1-517 PDGCIYWLPP AIFRSACSIS VTYFPFDWQN CSLIFQSQTY STNEIDLQLS ENSBTAP00000048242/1-519 PDGCVYWLPP AIFRSSCPVS VTFFPFDWQN CSLIFQSQTY STNEINLQLS ENSTTRP00000010342/1-518 PDGCVYWLPP AIFRSSCPVS VTYFPFDWQN CSLIFQSQTY GTNEINLQLS bmy_18154T0/1-983 PNGCVYWLPP AIFRSSCPVS VTYFPFDWQN CSLIFQSQTY STNEINLQLS BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000374145/1-517 QEDGQTIEWI FIDPEAFTEN GEWAIQHRPA KMLLDPAAPA QEAGHQKVVF ENSBTAP00000048242/1-519 QEDGQTIEWI FIDPEAFTEN GEWAIRHRPA KMLLDEAAPA EEAGHQKVVF ENSTTRP00000010342/1-518 QEDGQTIEWI FIDPEAFTEN GEWAIRHRPA KMLLDEVAPA EEAGHQKVVF bmy_18154T0/1-983 QEDGQTIEWI FIDPEAFTEN GEWAIRHRPA KMLLDEAAPA EEAGHQKVVF BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000374145/1-517 YLLIQRKPLF YVINIIAPCV LISSVAILIH FLPAKAGGQK CTVAINVLLA ENSBTAP00000048242/1-519 YLLIQRKPLF YVINIIAPCV LISSVAILIY FLPAKAGGQK CTVAINVLLA ENSTTRP00000010342/1-518 YLLIQRKPLF YVINIIAPCV LISSVAILIY FLPAKAGGQK CTVAINVLLA bmy_18154T0/1-983 YLLIQRKPLF YVINIIAPCV LISSVAILIY FLPAKAGGQK CTVAINVLLA BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000374145/1-517 QTVFLFLVAK KVPETSQAVP LISKYLTFLL VVTILIVVNA VVVLNVSLRS ENSBTAP00000048242/1-519 QTVFLFLVAK KVPETSQAVP LISKYLTFLL VVTILIVVNA VVVLNVSLRS ENSTTRP00000010342/1-518 QTVFLFLVAK KVPETSQAVP LISKYLTFLL VVTILIVVNA VVVLNVSLRS bmy_18154T0/1-983 QTVFLFLVAK KVPETSQAVP LISKYLTFLL VVTILIVVNA VVVLNVSLRS BACU010983/1-163 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000374145/1-517 PHTHSMARGV RKVFLRLLPQ LLRMHVRPLA PAAVQDTQSR LQNGSS-GWS ENSBTAP00000048242/1-519 PHTHSMARGV RKVFLRLLPQ LLRMHVRPLA PVAVQDAHPR LQNGSSSGWP ENSTTRP00000010342/1-518 PHTHSMARGV RKV-LRLLPQ LLRMHVRPLA PAAVQDARPR LRNGSSMRWS bmy_18154T0/1-983 PHTHSMARGV ---FLQLLPQ LLQMHVRPLA PAAVQDARPR LQNGSSTGWS BACU010983/1-163 ---------- ---------- ---MHVRPLA PAAVQDARPR LQNGSSTGWS 851 900 ENSP00000374145/1-517 ITTGEEVALC LPRSELLFQQ WQRQGLVAAA LEKLEKGPEL GLSQ-FCGSL ENSBTAP00000048242/1-519 ITAGEEVALC LPRSELLFRQ RQRNGLVRAA LEKLEKGPES GQSPEWCGSL ENSTTRP00000010342/1-518 ITAGEEVALR LPRSELLFRQ HQSNGLVRAA LEKLEKGPES GQSQEWCGSL bmy_18154T0/1-983 ITAGEEVALC LPRSELLFRQ HQRNGLVRAA LEKLEKGPES GQSQEWCGSL BACU010983/1-163 ITAGEEVALC LPRSELLFRQ HQRNGLVRAA LEKLEKGPES GQSQEWCGSL 901 950 ENSP00000374145/1-517 KQAAPAIQAC VEACNLIACA RHQQSHFDNG NEEWFLVGRV LDRVCFLAML ENSBTAP00000048242/1-519 KQAAPAIQAC VEACNLIARA RHQQTHFDSG NKEWFLVGRV LDRVCFLAML ENSTTRP00000010342/1-518 RQAAPAIQAC VEACNLIACA RYQQRHFDSG NKEWFLVGRV LDRVCFLVML bmy_18154T0/1-983 KQAAPAIQAC VEACNLIACA RYQQSHFDSG NKEWFLVGRV LDRVCFLVML BACU010983/1-163 KQAAPAIQAC VEACNLIACA RYQQSHFDSG NKEWFLVGRV LDRVCFLVML 951 1000 ENSP00000374145/1-517 SLFICGTAGI FLMAHYNRVP ALPFPGDPRP YLPSPD ENSBTAP00000048242/1-519 SLFVCGTAGI FLMAHYNRVP ALPFPGDPRS YLPSSD ENSTTRP00000010342/1-518 TLFVCGTAGI FLMAHYNRMP SLPFPGDPRS YLPSSD bmy_18154T0/1-983 SLFVCGTAGI FLMAHYNRMP ALPFPGDPRS YLPSSD BACU010983/1-163 SLFVCGTAGI FLMAHYNRMP ALPFPGDPRS YLPSSD