KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:50 2014 Check: 00 .. Name: ENSP00000353670/1-1216 Len: 1297 Check: 243 Weight: 1.00 Name: ENSBTAP00000048331/1-1150 Len: 1297 Check: 5606 Weight: 1.00 Name: ENSTTRP00000012633/1-1136 Len: 1297 Check: 8608 Weight: 1.00 Name: bmy_14979T0/1-671 Len: 1297 Check: 9777 Weight: 1.00 Name: BACU003294/1-1080 Len: 1297 Check: 2835 Weight: 1.00 // 1 50 ENSP00000353670/1-1216 ---------- ---------- --MSQAGDVE GPSTGDPVLS PQHNCELLQ- ENSBTAP00000048331/1-1150 ---------- ---------- --LTQEAAPA GPSTEDPVLS PLNSLGLFQE ENSTTRP00000012633/1-1136 ---------- ---------- --MSQEAAAE GSSTEDPVLS LHNSCGLFQE bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 MKSLSVSSQS LPSAVGPCRW ADMSQEAAAE GSSTEDPVLS LHNSCGPFQE 51 100 ENSP00000353670/1-1216 NMEGASSMPG LSPDGPGASS GPGVRAGSRR KIPRKEALRG GSSRAAGAAE ENSBTAP00000048331/1-1150 DMEETSSMSG LAPDLSGESS GDPVCAGSGK RVLREESCQG ASSQAVGAPG ENSTTRP00000012633/1-1136 DMEETSSMVG LAPDLPGGSS GAPVWVGSRK RVLREEAQQG ASSQVVGAPE bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 DMEETSSVVG LAPGLPGESS GAPVWVGSRK RVLREEAHQN ASSQVVGAPG 101 150 ENSP00000353670/1-1216 VRP------G VLELLAVVQS RGSMLAPGLH MQLPSVPTQG RALTSKRLQV ENSBTAP00000048331/1-1150 ASPEATAHPV VLGLQTVGQN RNSVPSSRLR RQLPTEPAQG RAQGLKRVQI ENSTTRP00000012633/1-1136 AHL------V VLGLQAMGES QDSVPGPRLH IQLPTVPAHR RAQASKRLQV bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 TSLEAE---V VLGLQAMGES QDSVPGPRLH IQPPTVPAHG RAQASKRLQV 151 200 ENSP00000353670/1-1216 SLCDILDDSC PRKLCSRSAG LPERALACRE RLAGVEEVSC LRPREARDGG ENSBTAP00000048331/1-1150 ILHDVLAGSC PRNLCSGCVG ---------- ---------- ---------- ENSTTRP00000012633/1-1136 TMHNILAGSW PRNLCSVSVG ---------- ---------- ---------- bmy_14979T0/1-671 ---------W Q--------- ---------- ---------- ---------- BACU003294/1-1080 TMHDILAGSW PRNLCSASVG ---------- ---------- ---------- 201 250 ENSP00000353670/1-1216 MSSPGCDRRS PTLSKEEPPG RPLTSSPDPV PVRVRKKWRR QGAHSECEEG ENSBTAP00000048331/1-1150 ---------- ---------- ---------- ---ARKKSRK SETPSEGQEG ENSTTRP00000012633/1-1136 ---------- ---------- ---------- ---TRQKSRR SEAPSE-DEG bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 ---------- ---------- ---------- ---TRKKSRR SEAPSEEEEG 251 300 ENSP00000353670/1-1216 AGDFLWLDQS PRGDNLLSVG DPPQVADLES LGGPCRPPSP KDTGSGPGEP ENSBTAP00000048331/1-1150 S--FLWLGQS --GDKPKAVG DSLQGADVAS LGGPCSPLSC KDTGSGPGHP ENSTTRP00000012633/1-1136 ADDFLWLGQS PGGDKPQSVG DSPQGADVES LGGPCSPLSC KDTGCGPGDS bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 ADGFLWLGQS PGGDKPQSVG DSPQGADLES LGGPCSPLSC KDTGCGPGDP 301 350 ENSP00000353670/1-1216 GGSGAGCASG TEKFGYLPAT GDGPQPGSPC GPVGFPVPSG GESLSSAAQA ENSBTAP00000048331/1-1150 GGGWVDCDSG IEKFEYLPTV RVGTPPGSPC DPVSFPVPTG GPSLQLAAQD ENSTTRP00000012633/1-1136 GGSWMSCASG IEKFEYLPTA EGGTQPGSPC DPVRSPLPSG GESLHPAARD bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 GGSWMSYASG VEKFEYLPTA EGGTQPGSPC DPVRSPLPSG GESLQPAARD 351 400 ENSP00000353670/1-1216 PPQSAALCLG ASAQASAEQQ EAVCVVRTGS DEGQAPAQDQ EELEAKAQPA ENSBTAP00000048331/1-1150 PLQSPELCLG GSGKASTAQQ EAEHIMRPGD GDGHGASHNQ EELEVVARPV ENSTTRP00000012633/1-1136 PPQSPVLCLG VSGKASTEQQ EARHIAGPGG GDGPATSHNQ EELEVKAQPV bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 SPQSPVLCLG VSGKASTEQK EARHIVGPGG GDGPATSHNQ EELEVKAQPV 401 450 ENSP00000353670/1-1216 SRGRLEQGLA APADTCASSR EPLGGLSSSL DTEASRACSG PFMEQRRSKG ENSBTAP00000048331/1-1150 SGGRPGQGLG DTP------- ------SSFL EPVASKASSG PSMRQRNSKC ENSTTRP00000012633/1-1136 SGGMPGQGLA AA-------- ---------L QPVASKASSG PCMEQRRSKC bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 SGEMPGQGLA AA-------- ---------L QPVASKASSG PSMGRRRSKC 451 500 ENSP00000353670/1-1216 TKNLKKGPVP CAQDRGTDRS SDNSHQDRPE EPSPGGCPRL EEVKIPHGVK ENSBTAP00000048331/1-1150 AKQLKMDPVP GAQDQGTNRW PDSSNQDQTE ESSPGSGPRL ETMRMAHGVK ENSTTRP00000012633/1-1136 AKQLRRSPVP HAQDQGTDRC PDDSSQDQAE ESSPGDCPKL EAMKMAHGVK bmy_14979T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU003294/1-1080 AKQLSRGPVP HAQDQGTDRC PDDSNQDQAE ESSPGGCPKL ---------- 501 550 ENSP00000353670/1-1216 LVCYLGSGPV IQLLGAISHG QAGGQLPPKL EVLEDLMEVS SPSPAQRLRR ENSBTAP00000048331/1-1150 LVCYVGSEPV ICLLGAVSYS QAGGQLPPKL EVLEDMMEAS SASPAQRPRK ENSTTRP00000012633/1-1136 HVYYVGSGAV IHLLGAIGYG QAGGLLPPKL EVLEDMMEVN SASPVQRPRL bmy_14979T0/1-671 ----VGSGAV IHLLGAIGYG QAGGLLPPKL EVLEDMMEVN SASPAQRPRR BACU003294/1-1080 ----VGSGAV IHLLGAISYG QAGGLLPPKL EVLEDMMEVN SASPAQRPRR 551 600 ENSP00000353670/1-1216 KKRPMVQGPA GCQVFQPSPS GGTAGDPGGL SDPFYPPRSG SLALGDPS-- ENSBTAP00000048331/1-1150 KKRRRARGRV RRQVEDPLAT SLGEGGPGGL SDPFHHPQES LPAPQGLPLL ENSTTRP00000012633/1-1136 KERPMARGPT GCQILPP-PS GGTAWGSGGL SDPFHHPRSH SFLPRG---- bmy_14979T0/1-671 KERPMAQGPA GC-------- ---------- ---------- ---------- BACU003294/1-1080 KERRMAQGPA GC-------- ---------- ---------- ---------- 601 650 ENSP00000353670/1-1216 -SDPACSQSG PMEAEEDSLP EQP--EDSAQ L--QQEKPSL YIGVRGTVVR ENSBTAP00000048331/1-1150 LCLLVLLQRS PVEAEEEEPG EQAGGEDLAQ LQPQQEKPPL DIGIRGTVVR ENSTTRP00000012633/1-1136 -STSAHAQCG PVEAEEEEPG EQARGEDSAQ LQPQQEKLPL DIGVRGTVVR bmy_14979T0/1-671 -------QCG PVEAEEEEPG EQARGEDSAQ LQPQQEKLPL DTGVRGTVVR BACU003294/1-1080 -------QCG PVEAEEEEPG EQARGEDSAQ LQPQQEKLPL DIGVRGTVVR 651 700 ENSP00000353670/1-1216 SMQEVLWTRL RELPDPVLSE EVVEGIAAGI EAALWDLTQG TNGRYKTKYR ENSBTAP00000048331/1-1150 TMQEALWSRR RKHPDLVLSE KVVEGIAAGI EAALFNLTQA TNGRYKTKYR ENSTTRP00000012633/1-1136 AMREALWSRL QGRPDLALSE EAVEGIAAGI EAALFDLTQA TDGRYKNKYR bmy_14979T0/1-671 AMQEALWSRL QERPDLVLSE EAVEGIAAGI EAALFDLTQA TNGRYKNKYR BACU003294/1-1080 AMQEALWSRL QERPDLVLSE EAVEGIAAGI EAALFDLTKA TNGRYKNKYR 701 750 ENSP00000353670/1-1216 SLLFNLRDPR NLDLFLKVVH GDVTPYDLVR MSSMQLAPQE LARWRDQEEK ENSBTAP00000048331/1-1150 SLLFNLRDPR NPELFLKVVH GDITPHGLVR MSSVQLAPQE LARWRDQEEK ENSTTRP00000012633/1-1136 SLLFNLRDPR NPDLFLKVVH GDVSPHGLVR MSSVQLAPQE LARWRDQEEK bmy_14979T0/1-671 SLLFNLRDPR NPDLFLKVVH GDVSPHGLVR MSSVQLAPQE LARWRDQEEK BACU003294/1-1080 SLLFNLRDPR NPDLFLKVVH GDVSPHGLVR MSSVQLAPQE LARWRDQEEK 751 800 ENSP00000353670/1-1216 RGLNIIEQQQ KEPCRLPASK MTHKGEVEIQ RDMDQTLTLE DLVGPQMFMD ENSBTAP00000048331/1-1150 RGLEIIEQLQ REPRSLPASK LTHKGEVEIL RDEDQTLTLE DIQGPMVSID ENSTTRP00000012633/1-1136 RSLEIIAQLQ KEPCSLPASK LTHKGEVEIL RDMDQTLTLE DLVEPMVSID bmy_14979T0/1-671 RG-------- ---------- ---------- ---------- ----PMVSID BACU003294/1-1080 RG-------- ---------- ---------- ---------- ----PMVSID 801 850 ENSP00000353670/1-1216 CSPQALPIAS ---------- ----EDTTGQ HDHHFLDPNC HICKDWEPSN ENSBTAP00000048331/1-1150 GGPRALPATS ---------- ----RDSMEQ HQHHFLDPSC RICTDWKPSC ENSTTRP00000012633/1-1136 CGPLALPATS ---------- ----EDTTEQ HKHHFLDPSC RICMDWKPLY bmy_14979T0/1-671 GDPLALPATS KG-------T TEQHEDTTEQ HEHYFLDSSC RICMDWKPLC BACU003294/1-1080 GDPLALPATS KGTTEQHEDT TEQHEDTTEQ HEHHFLDPSC RICMDWKPLY 851 900 ENSP00000353670/1-1216 ELLGSFEAAK SCGDNIFQKA LSQTPMPAPE MPKTRELSPT EPQDRVPPSG ENSBTAP00000048331/1-1150 ERPSSLKAAR RMRNHAFQRA TSQVPVSFPD MPQNKEKPLA TCKDRCGEVG ENSTTRP00000012633/1-1136 ERPASFIATR RMGDDAFQRA PSLVPMSSPE MPQTKEKPPT EPKDV-PPSR bmy_14979T0/1-671 EQPASFIATR RMGDDAFQRA PSLVPMSSPE MPQTKEKPPT EPKDR----- BACU003294/1-1080 EQPASFIATR RMGDDDFQRA PSLVPMSSPE MPQTKEKPPT EPKDR----- 901 950 ENSP00000353670/1-1216 -LHVPAAPTK ALPCLPPWEG VLDMFSIKRF RARAQLVSGH SCRLVQALPT ENSBTAP00000048331/1-1150 KLQMPAGPTK ALPTQLPWEG SLDMFCIKRF RVRAQLVSGH SCRLIQALPQ ENSTTRP00000012633/1-1136 -LQMPAGSTK ALPSQPPWEG SLDMFSIKQF RVKAQLVSGH SFCLIRALPQ bmy_14979T0/1-671 -LQMPAGSTK ALPSQPPWEG SLDMFSIKRF QVKAQLVSGH SFRLIRALPQ BACU003294/1-1080 -LQMPAGSTK ALPSQPPWEG SLDMFSIKRF QVKAQLVSGH SFRLIRALPQ 951 1000 ENSP00000353670/1-1216 VIRSAGCIPS NIVWDLLASI CPAKAKDVCV VRLCPHGARD TQNCRLLYSY ENSBTAP00000048331/1-1150 VIRSASCIAP DAVWDFLASI CPAEAKDICV VRLCPQSSRD TQNCHLLYSY ENSTTRP00000012633/1-1136 VIRSAGCIPP SAVWDFLASI CPAEAKDICV VRLCPQASRD TQNCHLLYSY bmy_14979T0/1-671 VIRSAGCIPP SAVWDFLASI CPAEAKDVCV VRLCPQGSQD TQNCHLLYSY BACU003294/1-1080 VIRSAGCIPP SAVWDFLASI CPAKAKDVCV VRLCPQGSRD TQNCHLLYSY 1001 1050 ENSP00000353670/1-1216 LNDRQRHGLA SVEHMGMVLL PLPAFQPLPT RLRPLGGPGL WALPVS--PL ENSBTAP00000048331/1-1150 LNNKQCHGLA AMEQARVVLL PLPAFQPLPS RLRPLGGPGR GSRPLVSFPH ENSTTRP00000012633/1-1136 LNNKQCHGLA AVEQVGVVLL PLPAFQPLPS RLRPLGGPGL WSLP------ bmy_14979T0/1-671 LNDKQRHGLA AVEQVGVVLL PLPAFQPLPS RLRPLGGP-- ---------- BACU003294/1-1080 LNDKQRHGLA AVEQVGVVLL PLPAFQPLPS RLRPLGGP-- ---------- 1051 1100 ENSP00000353670/1-1216 LSPGLEVTHS SLLLAVLLPK EGLPDTAGSS PWLGKVQKMV SFNSKVEKRY ENSBTAP00000048331/1-1150 LSPGLEATHS SLLLALLLPQ SGLPAMAGSG ALRGKVRKMV SFNRKVEMRC ENSTTRP00000012633/1-1136 LSPGLEATHA SLLLAVLLPK AGLLATAEFS PLWGKVRKML SFNRKAEMRC bmy_14979T0/1-671 ---GLEATHS SLLLAVLLPK AGLLDTAESR PLGGKVRKML SFNRKVEMRY BACU003294/1-1080 ---GLEATHS SLLLAVLLPK AGLLDTAESS PLGGKVRKML SFNRKVEMRY 1101 1150 ENSP00000353670/1-1216 YQPDDRRPNV PLKGTPPPGG AWQQSQGRGS IAPRGISAWQ RPPRGRGRLW ENSBTAP00000048331/1-1150 YQPEDKGPHV ALKGSPPPGG AMQQSQGKDS LAPRGICAWQ RPPRGRGSLW ENSTTRP00000012633/1-1136 HQPEATGPDV ALKGSPPPVG ALQQGQDKGS LAPRGICAWQ RPARGRGRLW bmy_14979T0/1-671 YQPEARGPDV ALKGSPPPVG ALQQGQGKGN LAPRGICAWQ RPSRGRGRLW BACU003294/1-1080 YQPEARGPDV ALKGSPSPVG ALQQGQDKGN LAPRGICAWQ RPPRGRGRLW 1151 1200 ENSP00000353670/1-1216 PEPENWQHPG RGQWPPEPGL RQSQHPYSVA PAGHGFGRGQ HFHRDSCPHQ ENSBTAP00000048331/1-1150 GEPKTRQGPG RGLWPPKPGW CQSWHPYSAS PVGH----DQ HRHRASCPNQ ENSTTRP00000012633/1-1136 GEPETWQGPG RGQRRPNPGW HQSWHPYSAS PAGH----DQ HLHRASCPRQ bmy_14979T0/1-671 GEPETWQHPG RGQRPPNPGW YQSWHPYSAS PAGH----DQ HLHRASCPHQ BACU003294/1-1080 GEPETWQGPG RGQRPPNPGW YQSWHPYSAS PAGH----DQ HLHRASCPHQ 1201 1250 ENSP00000353670/1-1216 ALLRHLESLA TMSHQLQALL C--------- ----PQTKSS IPRPLQRLSS ENSBTAP00000048331/1-1150 ALLQHLKSLV AMTQQLQASL M--------- SPGQPPTVPG T---QGLLCQ ENSTTRP00000012633/1-1136 ALLQHLKSLV AMSQQFQASL G-------PA RSNFPDLLPS LLQPLGFLAS bmy_14979T0/1-671 ALLQHLKSLV AMSHRLQASL RSLGQEQLPR PPAQPPAAPG I---LGLLCQ BACU003294/1-1080 ALLQHLKSLV AMSHRLQASL RSLGQEQLPR PPAQPPAAPG I---LGLLCQ 1251 1300 ENSP00000353670/1-1216 A--LAAPEPP GPARDSSLGP TDEAGSECPF PRKA------ ------- ENSBTAP00000048331/1-1150 P--PAAPEPT GSALDSSLGP TDGAGTDSPL PGET------ ------- ENSTTRP00000012633/1-1136 SATPAAPEPP GPSLDSSLGS TDGVGSECPL PEET------ ------- bmy_14979T0/1-671 S--PAAPEPP GPALDSSLES TDGAGSECPL PGETLPSLPT KRGTLIP BACU003294/1-1080 S--PAAPEPP GPALDSSLGS TDGAGSECPL PGRPYTHYPP KEGL---