KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:51 2014 Check: 00 .. Name: BACU006807/1-430 Len: 580 Check: 3034 Weight: 1.00 Name: ENSP00000376924/1-503 Len: 580 Check: 8118 Weight: 1.00 Name: ENSTTRP00000008014/1-520 Len: 580 Check: 9642 Weight: 1.00 Name: bmy_08076T0/1-534 Len: 580 Check: 1367 Weight: 1.00 Name: ENSBTAP00000048338/1-448 Len: 580 Check: 854 Weight: 1.00 // 1 50 BACU006807/1-430 ---------- ---------- --------MA TYTEHSMLSA DEDSPSSPED ENSP00000376924/1-503 MEEHGVTQTE HMATIEAHAV AQQVQQVHVA TYTEHSMLSA DEDSPSSPED ENSTTRP00000008014/1-520 MEEHGVTQTE HMATIEAHAV AQQVQQVHVA TYTEHSMLSA DEDSPSSPED bmy_08076T0/1-534 ---------- -MATIEAHAV AQQVQQVHVA TYTEHSMLSA DEDSPSSPED ENSBTAP00000048338/1-448 MEEHGVTQTE HMATIEAHAV AQQVQQVHVA TYTEHSMLSA DEDSPSSPED 51 100 BACU006807/1-430 TSYDDSDILN STAADEVTAH LAAAGPVGMA AAAAVATGKK RKRPHVFESN ENSP00000376924/1-503 TSYDDSDILN STAADEVTAH LAAAGPVGMA AAAAVATGKK RKRPHVFESN ENSTTRP00000008014/1-520 TSYDDSDILN STAADEVTAH LAAAGPVGMA AAAAVATGKK RKRPHVFESN bmy_08076T0/1-534 TSYDDSDILN STAADEVTAH LAAAGPVGMA AAAAVATGKK RKRPHVFESN ENSBTAP00000048338/1-448 TSYDDSDILN STAADEVTAH LAAAGPVGMA AAAAVATGKK RKRPHVFESN 101 150 BACU006807/1-430 PSIRKRQQTR LLRKLRATLD EYTTRVGQQA IVLCISPSKP NPVFKVFGAA ENSP00000376924/1-503 PSIRKRQQTR LLRKLRATLD EYTTRVGQQA IVLCISPSKP NPVFKVFGAA ENSTTRP00000008014/1-520 PSIRKRQQTR LLRKLRATLD EYTTRVGQQA IVLCISPSKP NPVFKVFGAA bmy_08076T0/1-534 PSIRKRQQTR LLRKLRATLD EYTTRVGQQA IVLCISPSKP NPVFKVFGAA ENSBTAP00000048338/1-448 PSIRKRQQTR LLRKLRATLD EYTTRVGQQA IVLCISPSKP NPVFKVFGAA 151 200 BACU006807/1-430 PLENV----- ---------- ---------- ---------- VRKYKSMILE ENSP00000376924/1-503 PLENV----- ---------- ---------- ---------- VRKYKSMILE ENSTTRP00000008014/1-520 PLENV----- ---------- ---------- ---------- VRKYKSMILE bmy_08076T0/1-534 PLENVELYST DNGLSPESKL IFYPILSHFY NSMASLLSPK VRKYKSMILE ENSBTAP00000048338/1-448 PLENV----- ---------- ---------- ---------- VRKYKSMILE 201 250 BACU006807/1-430 DLESALAEHA PAPQEVNSEL PPLTIDGIPV SVDKMT---- ---------- ENSP00000376924/1-503 DLESALAEHA PAPQEVNSEL PPLTIDGIPV SVDKMT---- ---------- ENSTTRP00000008014/1-520 DLESALAEHA PAPQEVNSEL PPLTIDGIPV SVDKMT---- ---------- bmy_08076T0/1-534 DLESALAEHA PAPQEVNSEL PPLTIDGIPV SVDKMTQNLL GGTNTSQTSF ENSBTAP00000048338/1-448 DLESALAEHA PAPQEVNSEL PPLTIDGIPV SVDKMT---- ---------- 251 300 BACU006807/1-430 ---------- QAQLRAFIPE MLKYSTGRGK PGWGKESCKP IWWPEDIPWA ENSP00000376924/1-503 ---------- QAQLRAFIPE MLKYSTGRGK PGWGKESCKP IWWPEDIPWA ENSTTRP00000008014/1-520 ---------- QAQLRAFIPE MLKYSTGRGK PGWGKESCKP IWWPEDIPWA bmy_08076T0/1-534 MTADDHTLVF QAQLRAFIPE MLKYSTGRGK PGWGKESCKP IWWPEDIPWA ENSBTAP00000048338/1-448 ---------- QAQLRAFIPE MLKYSTGRGK PGWGKESCKP IWWPEDIPWA 301 350 BACU006807/1-430 NVRSDVRTEE QKQRVSWTQA LRTIVKNCYK QHGREDLLYA FEDQQTQTQA ENSP00000376924/1-503 NVRSDVRTEE QKQRVSWTQA LRTIVKNCYK QHGREDLLYA FEDQQTQTQA ENSTTRP00000008014/1-520 NVRSDVRTEE QKQRVSWTQA LRTIVKNCYK QHGREDLLYA FEDQQTQTQA bmy_08076T0/1-534 NVRSDVRTEE QKQRVSWTQA LRTIVKNCYK QHGREDLLYA FEDQQTQTQA ENSBTAP00000048338/1-448 NVRSDVRTEE QKQRVSWTQA LRTIVKNCYK QHGREDLLYA FEDQQTQTQA 351 400 BACU006807/1-430 TTTHSIAHLV PSQTVVQTFS NPDGTVSLIQ ---------- ---------- ENSP00000376924/1-503 TATHSIAHLV PSQTVVQTFS NPDGTVSLIQ VGTGATVATL ADASELPTTV ENSTTRP00000008014/1-520 TTTHSIAHLV PSQTVVQTFS NPDGTVSLIQ VGTGATVATL ADASELPTTV bmy_08076T0/1-534 TTTHSIAHLV PSQTVVQTFS NPDGTVSLIQ VGTGATVATL ADASELPTTV ENSBTAP00000048338/1-448 TTTHSIAHLV PSQTVVQTFS NPDGTVSLIQ VGTGATVATL ADASELPTTV 401 450 BACU006807/1-430 ---------- ----VEQNWA TLQGGEMTIQ TTQASEATQA VASLAEAAVA ENSP00000376924/1-503 TVAQVNYSAV ADGEVEQNWA TLQGGEMTIQ TTQASEATQA VASLAEAAVA ENSTTRP00000008014/1-520 TVAQVNYSAV ADGEVEQNWA TLQGGEMTIQ TTQASEATQA VASLAEAAVA bmy_08076T0/1-534 TVAQVNYSAV ADGEVEQNWA TLQGGEMTIQ TTQASEATQA VASLAEAAVA ENSBTAP00000048338/1-448 TVAQVNYSAV ADGEVEQNWA TLQGGEMTIQ TTQASEATQA VASLAEAAVA 451 500 BACU006807/1-430 ASQEMQQGAT VTMALNSEAA AHAVATLAEA TLQGGGQIVL SGETAAAVGA ENSP00000376924/1-503 ASQEMQQGAT VTMALNSEAA AHAVATLAEA TLQGGGQIVL SGETAAAVGA ENSTTRP00000008014/1-520 ASQEMQQGAT VTMALNSEAA AHAVATLAEA TLQGGGQIVL SGETAAAVGA bmy_08076T0/1-534 ASQEMQQGAT VTMALNSEAA AHAVATLAEA TLQGGGQIVL SGETAAAVGA ENSBTAP00000048338/1-448 ASQEMQQGAT VTMALNRWRQ GWAI------ ---------- ---------- 501 550 BACU006807/1-430 LTGVQDAN-- ---------- ---------- -------ALD FIPQSVREVH ENSP00000376924/1-503 LTGVQDAN-- ---------- -----GLVQI PVSMYQTVVT SLAQGNGPVQ ENSTTRP00000008014/1-520 LTGVQDANGL CMAYGPCEWM LTNATGLVQI PVSMYQTVVT SLAQGNGPVQ bmy_08076T0/1-534 LTGVQDAN-- ---------- ---------- ---------- -VILGEGTYH ENSBTAP00000048338/1-448 ---------- ---------- ---------- ---------- ---KEEGDSV 551 600 BACU006807/1-430 LSLLSDTWRP STICSVLVET GGQLRSSCPE ENSP00000376924/1-503 VAMAPVTTRI SDSAVTMDGQ AVEVVTLEQ- ENSTTRP00000008014/1-520 VAMAPVTTRI SDSAVTMDGQ AVEVVTLEQ- bmy_08076T0/1-534 VIY-PLGIQR MNLMLDMIQL SLAFPPNTS- ENSBTAP00000048338/1-448 PVYRCKEKRR TSLCHNWH-- -LKLNTLNP-