KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:53 2014 Check: 00 .. Name: bmy_04998T0/1-562 Len: 1012 Check: 4161 Weight: 1.00 Name: ENSP00000413234/1-939 Len: 1012 Check: 9291 Weight: 1.00 Name: BACU003619/1-944 Len: 1012 Check: 6108 Weight: 1.00 Name: ENSTTRP00000011865/1-937 Len: 1012 Check: 3490 Weight: 1.00 Name: ENSBTAP00000048343/1-915 Len: 1012 Check: 1382 Weight: 1.00 // 1 50 bmy_04998T0/1-562 MCCGVATPLS PGGFVDLPVL AGRGRTRLRQ SPASASPTSC LASGKSKEAE ENSP00000413234/1-939 ---------- ---------- -MPAVSKGDG MRGLAVFISD IRNCKSKEAE BACU003619/1-944 ---------- ---------- ---------- ---------- -------MHF ENSTTRP00000011865/1-937 ---------- ---------- -MPAVSKGDG MRGLAVFISD IRNCKSKEAE ENSBTAP00000048343/1-915 ---------- ---------- ---------- ---------- ----KSKEAE 51 100 bmy_04998T0/1-562 IKRINKELAN IRSKFKGDKA LDGYSKKKYV CKLLFIFLLG HDIDFGHMEA ENSP00000413234/1-939 IKRINKELAN IRSKFKGDKA LDGYSKKKYV CKLLFIFLLG HDIDFGHMEA BACU003619/1-944 IVRIYHILSY AFIVFYRDKA LDGYSKKKYV CKLLFIFLLG HDIDFGHMEA ENSTTRP00000011865/1-937 IKRINKELAN IRSKFKGDKA LDGYSKKKYV CKLLFIFLLG HDIDFGHMEA ENSBTAP00000048343/1-915 IKRINKELAN IRSKFKGDKA LDGYSKKKYV CKLLFIFLLG HDIDFGHMEA 101 150 bmy_04998T0/1-562 VNLLSSNRYT EKQIGYLFIS VLVNSNSELI RLINNAVKND LGSRNPTFTG ENSP00000413234/1-939 VNLLSSNRYT EKQIGYLFIS VLVNSNSELI RLINNAIKND LASRNPTFMG BACU003619/1-944 VNLLSSNRYT EKQIGYLFIS VLVNSNSELI RLINNAVKND LGSRNPTFTG ENSTTRP00000011865/1-937 VNLLSSNRYT EKQIGYLFIS VLVNSNSELI RLVNNAVKND LGSRNPTFTG ENSBTAP00000048343/1-915 VNLLSSNRYT EKQIGYLFIS VLVNSNSELI RLINNAIKND LASRNPTFMG 151 200 bmy_04998T0/1-562 LALHCIANVG SREMAEAFAG EIPKILVAGD TMDSVKQSAA LCLLRLYRTS ENSP00000413234/1-939 LALHCIASVG SREMAEAFAG EIPKVLVAGD TMDSVKQSAA LCLLRLYRTS BACU003619/1-944 LALHCIANVG SREMAEAFAG EIPKILVAGD AMDSVKQSAA LCLLRLYRTS ENSTTRP00000011865/1-937 LALHCIANVG SREMAEAFTG EIPKILVAGD TMDSVKQSAA LCLLRLYRTS ENSBTAP00000048343/1-915 LALHCIANVG SREMAEAFAG EIPKILVAGD TMDSVKQSAA LCLLRLHRAS 201 250 bmy_04998T0/1-562 PDLVPMGDWT SRVVHLLNDQ HLGVVTAAAS LITTLAQKNP EEFKTSVSLA ENSP00000413234/1-939 PDLVPMGDWT SRVVHLLNDQ HLGVVTAATS LITTLAQKNP EEFKTSVSLA BACU003619/1-944 PDLVPMGDWT SRVVHLLNDQ HLGVVTAAAS LITTLAQKNP EEFKTSVSLA ENSTTRP00000011865/1-937 PDLVPMGDWT SRVVHLLNDQ HLGVVTAAAS LITTLAQKNP EEFKTSVSLA ENSBTAP00000048343/1-915 PDLVPVGDWT SRVVHLLNDQ HLGVVTAATS LITTLAQKNP EEFKTSVSLA 251 300 bmy_04998T0/1-562 VSRLSRIVTS ASTDLQDYTY YFVPAPWLSV KLLRLLQCYP PPGGAAVRAK ENSP00000413234/1-939 VSRLSRIVTS ASTDLQDYTY YFVPAPWLSV KLLRLLQCYP P--------- BACU003619/1-944 VSRLSRIVTS ASTDLQDYTY YFVPAPWLSV KLLRLLQCYP P--------- ENSTTRP00000011865/1-937 VSRLSRIVTS ASTDLQDYTY YFVPAPWLSV KLLRLLQCYP P--------- ENSBTAP00000048343/1-915 VSRLSRIVTS ASTDLQDYTY YFVPAPWLSV KLLRLLQCYP P--------- 301 350 bmy_04998T0/1-562 GSRANVCPSR PEDPAVRGRL TECLETILNK AQEPPKSKKV QHSNAKNAVL ENSP00000413234/1-939 ---------- P-DPAVRGRL TECLETILNK AQEPPKSKKV QHSNAKNAVL BACU003619/1-944 ---------- PEDPAVRGRL TECLETILNK AQEPPKSKKV QHSNAKNAVL ENSTTRP00000011865/1-937 ---------- PEDPAVRGRL TECLETILNK AQEPPKSKKV QHSNAKNAVL ENSBTAP00000048343/1-915 ---------- PEDPAVRGRL TECLEAILNK AQEPPKSKKV QHSNAKNAVL 351 400 bmy_04998T0/1-562 FEAISLVVHH DSEPNLLVRA CNQLGQFLQH RETNLRYLAL ESMCTLASSE ENSP00000413234/1-939 FEAISLIIHH DSEPNLLVRA CNQLGQFLQH RETNLRYLAL ESMCTLASSE BACU003619/1-944 FEAISLIIHH DSEPNLLVRA CNQLGQFLQH RETNLRYLAL ESMCALASSE ENSTTRP00000011865/1-937 FEAISLIIHH DSEPNLLVRA CNQLGQFLQH RETNLRYLAL ESMCTLASSE ENSBTAP00000048343/1-915 FEAISLVTHH DSEPNLLVRA CNQLGQFLQH RETNLRYLAL ESMCTLASSE 401 450 bmy_04998T0/1-562 FSHEAVKTHI ETVINALK-- ---------- ---------- ---------- ENSP00000413234/1-939 FSHEAVKTHI ETVINALK-- ---------- ---TERDVSV RQRAVDLLYA BACU003619/1-944 FSHEAVKTHI ETVISALKAS SFHVAVGSVL VPQTERDVSV RQRAVDLLYA ENSTTRP00000011865/1-937 FSHEAVKTHI ETVINALK-- ---------- ---TERDVSV RQRAVDLLYA ENSBTAP00000048343/1-915 FSHEAVKTHI ETVINALK-- ---------- ---TERDVSV RQRAVDLLYA 451 500 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000413234/1-939 MCDRSNAPQI VAEMLSYLET ADYSIREEIV LKVAILAEKY AVDYTWYVDT BACU003619/1-944 MCDRSNAQQI VAEMLSYLET ADYSIREEIV LKVAILAEKY AVDYTWYVDT ENSTTRP00000011865/1-937 MCDRSNAQQI VAEMLSYLET ADYSIREEIV LKVAILAEKY AVDYTWYVDT ENSBTAP00000048343/1-915 MCDRSNAQQI VAEMLSYLET ADYSIREEIV LKVAILAEKY AVDYTWYVDT 501 550 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ATRVPSV--- ENSP00000413234/1-939 ILNLIRIAGD YVSEEVWYRV IQIVINRDDV QGYAAKTVFE ALQAPACHEN BACU003619/1-944 ILNLIRIAGD YVSEEVWYRV IQIVINRDDV QGYAAKTVFE ALQAPACHEN ENSTTRP00000011865/1-937 ILNLIRIAGD YVSEEVWYRV IQIVVNRDDV QGYAAKTVFE ALQAPACHEN ENSBTAP00000048343/1-915 ILNLIRIAGD YVSEEVWYRV IQIVINRDDV QGYAAKTVFE ALQAPACHEN 551 600 bmy_04998T0/1-562 ---------- ---------- ATASLTHAH- ---------- ---------- ENSP00000413234/1-939 LVKVGGYILG EFGNLIAGDP RSSPLIQFHL LHSKFHLCSV PTRALLLSTY BACU003619/1-944 LVKVGGYILG EFGNLIAGDP RSSPLTQFHF LHSKFHLCSV PTRALLLSTY ENSTTRP00000011865/1-937 LVKVGGYILG EFGNLIAGDP RSSPLTQFHL LHSKFHLCSV PTRALLLSTY ENSBTAP00000048343/1-915 LVKVGGYILG EFGNLIAGDP RSSPLTQFHL LHSKFHLCSV PTRALLLSTY 601 650 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000413234/1-939 IKFVNLFPEV KPTIQDVLRS DSQLRNADVE LQQRAVEYLR LSTVASTDIL BACU003619/1-944 IKFVNLFPEV KGTIQDVLRS DSQLKNADVE LQQRAVEYLR LSTVASTDIL ENSTTRP00000011865/1-937 IKFVNLFPEV KGTIQDVLRS DSQLKNADVE LQQRAVEYLR LSTVASTDIL ENSBTAP00000048343/1-915 IKFVNLFPEV KGTIQDVLRS DSQLKNADVE LQQRAVEYLR LSTVASTDIL 651 700 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000413234/1-939 ATVLEEMPPF PERESSILAK LKKKKGPSTV TDLEDTKRDR SVDVNGGPEP BACU003619/1-944 ATVLEEMPPF PERESSILAK LKKKKGPSTV TDLEEAKRER SADVNGGPEP ENSTTRP00000011865/1-937 ATVLEEMPPF PERESSILAK LKKKKGPSTV TDLEEAKRER SADVNGGPEP ENSBTAP00000048343/1-915 ATVLEEMPPF PERESSILAK LKKKKGPSTV TDLEEAKRER SADVNGGPEP 701 750 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000413234/1-939 APASTSAVST PSPSADLLGL GAAPPAPAGP PPSSGGSGLL VDVFSDSASV BACU003619/1-944 APSSTSAAST PSPSADLLGL GAAPPVPTGP PPSAG--GLL VDVFSDSPSA ENSTTRP00000011865/1-937 APASASAAST PSPSADLLGL GAAPPVPTGP PPSSG--GLL VDVFSDSPSA ENSBTAP00000048343/1-915 ALASTSAVST PSPSADLLGL GAAPPVPAGP PPSSG--GLL VDVFSDSPSA 751 800 bmy_04998T0/1-562 ---------- ---------- ---------- ---------- ---------- ENSP00000413234/1-939 VAPLAPGSED NFARFVCKNN GVLFENQLLQ IGLKSEFRQN LGRMFIFYGN BACU003619/1-944 VAPLAPGSED NFARFVCKNN GVLFENQLLQ IGLKSEFRQN LGRMFIFYGN ENSTTRP00000011865/1-937 VAPLAPGSED NFARFVCKNN GVLFENQLLQ IGLKSEFRQN LGRMFIFYGN ENSBTAP00000048343/1-915 AAPLAPGSED NFARFVCKNN GVLFENQLLQ IGLKSEFRQN LGRMFIFYGN 801 850 bmy_04998T0/1-562 ---------- ---------- ---------- ---------L SLQTKPVDPT ENSP00000413234/1-939 KTSTQFLNFT PTLICSDDLQ PN-------- ---------L NLQTKPVDPT BACU003619/1-944 KTSTQFLSFT PTLICSDDLQ ANILARVPSV ATASLTHAHL SLQTKPVDPT ENSTTRP00000011865/1-937 KTSTQFLSFT PTLICSDDLQ AN-------- ---------L SLQTKPVDPT ENSBTAP00000048343/1-915 KTSTQFLNFT PTLICSDDLQ AN-------- ---------L SLQTKPVDPT 851 900 bmy_04998T0/1-562 VDGGAQVQQA VNIECVSDFT EAPVLNIQFR YGGTFQNVSV KLPITLNKFF ENSP00000413234/1-939 VEGGAQVQQV VNIECVSDFT EAPVLNIQFR YGGTFQNVSV QLPITLNKFF BACU003619/1-944 VDGGAQVQQA VNIECVSDFT EAPVLNIQFR YGGTFQNVSV KLPITLNKFF ENSTTRP00000011865/1-937 VDGGAQVQQA VNIECVSDFT EAPVLNIQFR YGGTFQNVSV KLPITLNK-F ENSBTAP00000048343/1-915 VDGGAQVQQA VNIECVSDFT EAPVLNIQFR YGGTFQNVSV KLPITLNKFF 901 950 bmy_04998T0/1-562 QPTEMASQDF FQRWKQLSNP QQEVQNIFKA KHPMDTEITK AK-------- ENSP00000413234/1-939 QPTEMASQDF FQRWKQLSNP QQEVQNIFKA KHPMDTEVTK AKIIGFGSAL BACU003619/1-944 QPTEMAAQDF FQRWKQLSNP QQEVQNIFKA KHPMDTEITK AKIIGFGSAL ENSTTRP00000011865/1-937 QPTEMASQDF FQRWKQLSNP QQEVQNIFKA KHPMDTEITK AKIIGFGSAL ENSBTAP00000048343/1-915 QPTEMASQDF FQRWKQLSNP QQEVQSIFKA KHPMDTEVTK AKIIGFGSAL 951 1000 bmy_04998T0/1-562 ---------- ---------- ---------- -------MYR LTLRTSRETV ENSP00000413234/1-939 LEEVDPNPAN FVGAGIIHTK TTQIGCLLRL EPNLQAQMYR LTLRTSKEAV BACU003619/1-944 LEEVDPNPAN FVGAGIIHTK TTQIGCLLRL EPNLQAQMYR LTLRTSRETV ENSTTRP00000011865/1-937 LQEVDPNPAT LWGAAIIHTK TTQIGCLLRL EPNLQAQMYR LTLRTSRETV ENSBTAP00000048343/1-915 LEEVDPNPAN FVGAGIIHTR TAQIGCLLRL EPNLQAQMYR LTLRTSRETV 1001 1050 bmy_04998T0/1-562 SQRLCELLSE QF ENSP00000413234/1-939 SQRLCELLSA QF BACU003619/1-944 SQRLCELLSE QF ENSTTRP00000011865/1-937 SQRLCELLSE QF ENSBTAP00000048343/1-915 SQRLCELLSE QF