KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:54 2014 Check: 00 .. Name: ENSBTAP00000048361/1-1113 Len: 1330 Check: 1874 Weight: 1.00 Name: ENSP00000384651/1-1198 Len: 1330 Check: 5773 Weight: 1.00 Name: ENSTTRP00000001442/1-1202 Len: 1330 Check: 8006 Weight: 1.00 Name: bmy_01615T0/1-1314 Len: 1330 Check: 1288 Weight: 1.00 Name: BACU003339/1-1209 Len: 1330 Check: 1803 Weight: 1.00 // 1 50 ENSBTAP00000048361/1-1113 ---------- ---------- ---------- ---------- ---------- ENSP00000384651/1-1198 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001442/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_01615T0/1-1314 MSCRPFPVHV ALVYSENTEK KNFLVKRSSR KSSWDKLHLY NYHSGTQVLS BACU003339/1-1209 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000048361/1-1113 ---------- ---------- ---------- ---------- ---------- ENSP00000384651/1-1198 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001442/1-1202 ---------- ---------- ---------- ---------- ---------- bmy_01615T0/1-1314 RHKGKKSLAK IPKKGRGSLL LIWASCHVLS VNTQCSLSQE LPLKNGNRIW BACU003339/1-1209 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000048361/1-1113 ----MDEETR HSLECIQANQ IFPRKQLIRE DENLQVPFLE LHGESTEYVG ENSP00000384651/1-1198 ----MDEETR HSLECIQANQ IFPRKQLIRE DENLQVPFLE LHGESTEFVG ENSTTRP00000001442/1-1202 ----MDEETR HSLECIQANQ IFPRKQLIRE DENLQVPFLE LHGESTEYVG bmy_01615T0/1-1314 LKEKKDEETQ HSLECIQANQ IFPRKQLIRE DENLQVPFLE LHGESTEYVG BACU003339/1-1209 ----MDEETQ HSLECIQANQ IFPRKQLIRE DENLQVPFLE LHGESTEYVG 151 200 ENSBTAP00000048361/1-1113 RAEDAIIALS NYRLHIKFKE SLVNTASQSA ASEIPIPLQL IESVECRDIF ENSP00000384651/1-1198 RAEDAIIALS NYRLHIKFKE SLVN------ -----VPLQL IESVECRDIF ENSTTRP00000001442/1-1202 RAEDAIIALS NYRLHIKFKE SLVN------ -----VPLQL IESVECRDIF bmy_01615T0/1-1314 RAEDAIIALS NYRLHIKFKE SLVN------ -----VPLQL IESVECRDIF BACU003339/1-1209 RAEDAIIALS NYRLHIKFKE SLVN------ -----VPLQL IESVECGDIF 201 250 ENSBTAP00000048361/1-1113 QLHLTCKDCK VIRCQFSTFE QCQEWLKRLN NAIRPPAKIE DLFSFAYHAW ENSP00000384651/1-1198 QLHLTCKDCK VIRCQFSTFE QCQEWLKRLN NAIRPPAKIE DLFSFAYHAW ENSTTRP00000001442/1-1202 QLHLTCKDCK IIRCQFSTFE QCQEWLKRLN NAVRPPAKIE DLFSFAYHAW bmy_01615T0/1-1314 QLHLTCKDCK VIRCQFSTFE QCQEWLKRLN NAIRPPAKIE DLFSFAYHAW BACU003339/1-1209 QLHLTCKDCK VIRCQFSTFE QCQEWLKRLN NAIRPPAKIE DLFSFAYHAW 251 300 ENSBTAP00000048361/1-1113 CMEVYASEKE QHGDLCRPGE HVTSRFKNEV ERMGFDMNNA WRISNINEKY ENSP00000384651/1-1198 CMEVYASEKE QHGDLCRPGE HVTSRFKNEV ERMGFDMNNA WRISNINEKY ENSTTRP00000001442/1-1202 CMEVYASEKE QHGDLCRPGE HVTSRFKNEV ERMGFDMNNA WRISNINEKY bmy_01615T0/1-1314 CMEVYASEKE QHGDLCRPGE HVTSRFKNEV ERMGFDMNNA WRISNINEKY BACU003339/1-1209 CMEVYASEKE QHGDLCRPGE HVTSRFKNEV ERMGFDMNNA WRISNINEKY 301 350 ENSBTAP00000048361/1-1113 RLCGSYPQEL IVPAWITDKE LESVAGFRSW KRIPAVVYRH QSNGAVIARC ENSP00000384651/1-1198 KLCGSYPQEL IVPAWITDKE LESVSSFRSW KRIPAVIYRH QSNGAVIARC ENSTTRP00000001442/1-1202 KLCGSYPQEL IVPAWITDKE LESVASFRSW KRIPAVVYXX XXXXXXXXXX bmy_01615T0/1-1314 RLCGSYPQEL IVPAWITDKE LESVASFRSW KRIPAVVYRH QSNGAVIARC BACU003339/1-1209 KLCGSYPQEL IVPAWITDKE LESVASFRSW KRIPAVVYRH QSNGAVIARC 351 400 ENSBTAP00000048361/1-1113 GQPEVSWWGW RNADDEHLVQ SVAKACASDS RSGGSKPSAR NSPRDFPCAG ENSP00000384651/1-1198 GQPEVSWWGW RNADDEHLVQ SVAKACASDS RSSGSKLSTR NTSRDFPNGG ENSTTRP00000001442/1-1202 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01615T0/1-1314 GQPEVSWWGW RNADDEHLVQ SVAKACASDS RSSGSKLSTR NSPRDFPSAG BACU003339/1-1209 GQPEVSWWGW RNADDEHLVQ SVAKACASDS RSSGSKLSTR NSPRDFPNA- 401 450 ENSBTAP00000048361/1-1113 DLSDVEFDSS LSNASGAESL AIQPQKLLIL DARSYAAAVA NRAKGGGCEC ENSP00000384651/1-1198 DLSDVEFDSS LSNASGAESL AIQPQKLLIL DARSYAAAVA NRAKGGGCEC ENSTTRP00000001442/1-1202 XXXXXXXXSS LSNASGAESL AVQPQKLLIL DARSYAAAVA NRAKGGGCEC bmy_01615T0/1-1314 DLSDVEFDSS LSNASGAESL AVQPQKLLIL DARSYAAAVA NRAKGGGCEC BACU003339/1-1209 DLSDVEFDSS LSNASGAESL AVQPQKLLIL DARSYAAAVA NRAKGGGCEC 451 500 ENSBTAP00000048361/1-1113 PEYYPNCEVV FMGMANIHSI RRSFQSLRLL CTQMPDPGNW LSALESTKWL ENSP00000384651/1-1198 PEYYPNCEVV FMGMANIHSI RRSFQSLRLL CTQMPDPGNW LSALESTKWL ENSTTRP00000001442/1-1202 PEYYPNCEVV FMGMANIHSI RRSFQSLRLL CTQMPDPGNW LSALESTKWL bmy_01615T0/1-1314 PEYYPNCEVV FMGMANIHSI RRSFQSLRLL CTQMPDPGNW LSALESTKWL BACU003339/1-1209 PEYYPNCEVV FMGMANIHSI RRSFQSLRLL CTQMPDPGNW LSALESTKWL 501 550 ENSBTAP00000048361/1-1113 HHLSVLLKSA LLVVHAVDRD QRPVLAHCSD GWDRTPQIVA LAKLLLDPYY ENSP00000384651/1-1198 HHLSVLLKSA LLVVHAVDQD QRPVLVHCSD GWDRTPQIVA LAKLLLDPYY ENSTTRP00000001442/1-1202 HHLSVLLKSA LLVVHAVDRD QRPVLAHCSD GWDRTPQIVA LAKLLLDPYY bmy_01615T0/1-1314 HHLSVLLKSA LLVVHAVDRD QRPVLAHCSD GWDRTPQIVA LAKLLLDPYY BACU003339/1-1209 HHLSVLLKSA LLVVHAVDRD QRPVLAHCSD GWDRTPQIVA LAKLLLDPYY 551 600 ENSBTAP00000048361/1-1113 RTIEGFQVLV EMEWLDFGHK FADRCGHGEN SDDLNERCPV FLQWLDCVHQ ENSP00000384651/1-1198 RTIEGFQVLV EMEWLDFGHK FADRCGHGEN SDDLNERCPV FLQWLDCVHQ ENSTTRP00000001442/1-1202 RTIEGFQVLV EMEWLDFGHK FADRCGHGEN SDDLNERCPV FLQWLDCVHQ bmy_01615T0/1-1314 RTIEGFQVLV EMEWLDFGHK FADRCGHGEN SDDLNERCPV FLQWLDCVHQ BACU003339/1-1209 RTIEGFQVLV EMEWLDFGHK FADRCGHGEN SDDLNERCPV FLQWLDCVHQ 601 650 ENSBTAP00000048361/1-1113 LQRQFPCSFE FNEAFLVKLV QHTYSCLFGT FLCNNAKERG EKHTQERTCS ENSP00000384651/1-1198 LQRQFPCSFE FNEAFLVKLV QHTYSCLFGT FLCNNAKERG EKHTQERTCS ENSTTRP00000001442/1-1202 LQRQFPCSFE FNEAFLXXXX XXXXXXXFGT FLCNNAKERG EKHTQERTCS bmy_01615T0/1-1314 LQRQFPCSFE FNEAFLVKLV QHTYSCLFGT FLCNNAKERG EKHTQERTCS BACU003339/1-1209 LQRQFPCSFE FNEAFLVKLV QHTYSCLFGT FLCNNAKERG EKHTQERTCS 651 700 ENSBTAP00000048361/1-1113 VWSLLRAGNK AFKNLLYSSQ SEAVLYPVCH VRNLMLWSAV YLPCPSPSTP ENSP00000384651/1-1198 VWSLLRAGNK AFKNLLYSSQ SEAVLYPVCH VRNLMLWSAV YLPCPSPTTP ENSTTRP00000001442/1-1202 VWSLLRAGNK AFKNLLYSSQ SEAVLYPVCH VRNLMLWSAV YLPCPSPSTP bmy_01615T0/1-1314 VWSLLRAGNK AFKNLLYSSQ SEAVLYPVCH VRNLMLWSAV YLPCPSPSTP BACU003339/1-1209 VWSLLRAGNK AFKNLLYSSQ SEAVLYPVCH VRNLMLWSAV YLPCPSPSTP 701 750 ENSBTAP00000048361/1-1113 VDDSCAPYPA PGCSPDDPPL SRLPKTRSFD NLTTACDNTV PLASRRSSDP ENSP00000384651/1-1198 VDDSCAPYPA PGTSPDDPPL SRLPKTRSYD NLTTACDNTV PLASRRCSDP ENSTTRP00000001442/1-1202 VDDSCAPYPA PGTSPDDTPL SRLPKTRSFD NLTTACENTV PLASRRSSDP bmy_01615T0/1-1314 VDDSCALYPA PGTNPDDPPL SRLPKTRSFD NLTTACENTV PLASRRSSDP BACU003339/1-1209 VDDSCAPYPA PGTSPDDPPL SRLPKTRSFD NLTTACENTV PLASRRSSDP 751 800 ENSBTAP00000048361/1-1113 SLNEKWQEHR RSLELSTLAG PGEEPVEPDS LGKPTKVLGG AELSVAAGVA ENSP00000384651/1-1198 SLNEKWQEHR RSLELSSLAG PGEDPLSADS LGKPTRVPGG AELSVAAGVA ENSTTRP00000001442/1-1202 SLNEKWQEHR RSLELSTLAG PGEELLDPDS LGKPAKVLGG AELSVAAGVA bmy_01615T0/1-1314 SLNEKWQEHR RSLELSTLAG PGEELLDPDS LGKPAKVLGG AELSVAAGVA BACU003339/1-1209 SLNEKWQEHR RSLELSTLAG PGEELLDPDS LGKPAKVLGG AELSVAAGVA 801 850 ENSBTAP00000048361/1-1113 EGQMENILQE ATKEESGVEE PAHR---GVQ EVKEEALLEE GSRGKSPEGS ENSP00000384651/1-1198 EGQMENILQE ATKEESGVEE PAHRAGIEIQ EGKEDPLLEK ESRRKTPEAS ENSTTRP00000001442/1-1202 EGQMENILQE ATKEESGVEE PAHR---EMQ EVKEEALLEE GSRGKTPECP bmy_01615T0/1-1314 EGQMENILQE ATKEESGVEE PAHR---GMQ EVKEEALLEE GSRGKTPELP BACU003339/1-1209 EGQMENILQE ATKEESGVEE PAHR---GMQ EVKEEALLEE GSRGKTPELP 851 900 ENSBTAP00000048361/1-1113 ARELDQQPEV GEASLRS-HP GTSLSGLSQG VPE-QGGHSV LPSSLQEPPR ENSP00000384651/1-1198 AIGLHQDPEL GDAALRS-HL DMSWPLFSQG ISEQQSGLSV LLSSLQVPPR ENSTTRP00000001442/1-1202 AIVLHQEPEL GDAALRSHHP GTSLLVLSQG ILEQQGGHSI LPSSLQEPPP bmy_01615T0/1-1314 AIVLHQEPEL GDAALRS-HP GTSLLVLSQG IPEQQGGHSI LPSSLQEPPR BACU003339/1-1209 AIVLHQEPEL GDAALRS-HP GTSLLVLSQG IPEQQGGHSI LPSSLQEPPQ 901 950 ENSBTAP00000048361/1-1113 EEGSQEVPME PSQIGATAED REEAVLPVSA DVAVDSGTSQ SSS-LPSQVS ENSP00000384651/1-1198 GEDSLEVPVE QFRIEEIAEG REEAVLPIPV DAKVGYGTSQ SCSLLPSQVP ENSTTRP00000001442/1-1202 GEDAQEVPVE QSRIGAITQD REEAVLPISV DVKVGFGTSQ SSS-LPSQVS bmy_01615T0/1-1314 GEDAQEVPVE QSRIGAITQD REEAVLPISV DVKVGSGTSQ SSS-LSSQVS BACU003339/1-1209 GEDAQEVPVE QSRIGAITQD REEAVLPISV DVKVGSGTSQ SSS-LPSQVS 951 1000 ENSBTAP00000048361/1-1113 FETRGPNMDG SVDMLMEDKV KSDSGPQGHH RP---GPVHS GWLGGKDVLP ENSP00000384651/1-1198 FETRGPNVDS STDMLVEDKV KSVSGPQGHH RSCLVN---- ---SGKDRLP ENSTTRP00000001442/1-1202 FETRGPNADS SMDMLVEDKV KSESGPQGHD RPCLPARVSS GRFSGKEELP bmy_01615T0/1-1314 FETRGPNADS SMDMLVEDKV KSESGPQGHD KPCLPARVSS GRFSGKEELP BACU003339/1-1209 FETRGPNADS SMDMLVEDKV KSESGPQGHD KPCLPARVSS GRFSGKEELP 1001 1050 ENSBTAP00000048361/1-1113 PAVEPRP--- --AERPQLGP VVHRTSPGSA RSPAHSPSAL PLAECKEGLV ENSP00000384651/1-1198 QTMEPSPSET SLVERPQVGS VVHRTSLGST LSLTRSPCAL PLAECKEGLV ENSTTRP00000001442/1-1202 QAMEPRPSER SLAERPQVGS LVYRTSPSST QSPAHSPCAL PLAECKEGLV bmy_01615T0/1-1314 QAMEPRPSER SLAERPQVGS LVYRTSPSST QSPAHSPCAL PLAECKEGLV BACU003339/1-1209 QALEPRPSER SLAERPQVGS LVYRTSPSST QSPAHSPCAL PLAECKEGLV 1051 1100 ENSBTAP00000048361/1-1113 CNGAPETENK ASEQPPGLST LQKYPTPNGH CANGETGRSK DSLSRQLSAT ENSP00000384651/1-1198 CNGAPETENR ASEQPPGLST LQMYPTPNGH CANGEAGRSK DSLSRQLSAM ENSTTRP00000001442/1-1202 CNGAPETENK ASEQLPGHST LQKYPTPNGH CANGETGRSK DSLSRQLSAT bmy_01615T0/1-1314 CNGAPETENK ASEQPPGHST LQKYPTPNGH CANGETGRSK DSLSRQLSAT BACU003339/1-1209 CNGAPETENK ASEQPPGHST LQKYPTPNGH CANGETGRSK DSLSRQLSAT 1101 1150 ENSBTAP00000048361/1-1113 SCSSAHVHTR SLHPKWLHGH SGRPSAAGSP EQPSRSHLDD DGMPVYTDTI ENSP00000384651/1-1198 SCSSAHLHSR NLHHKWLHSH SGRPSATSSP DQPSRSHLDD DGMSVYTDTI ENSTTRP00000001442/1-1202 SCSSAHLHSR NLHHKWLHSH SGRASATGSP DQPSRSHLDD DGMPLYTDTI bmy_01615T0/1-1314 SCSSAHLHSR NLHHKWLHSH SGRASATGSP DQPSRSHLDD DGMPVYTDTI BACU003339/1-1209 SCSSAHLHSR NLHHKWLHSH SGRASATGSP DQPSRSHLDD DGMPVYTDTI 1151 1200 ENSBTAP00000048361/1-1113 QQRLRQIESG HQQEVETLKK QVQELRSRLE SQYLTSSLRF NGDFGDEVVS ENSP00000384651/1-1198 QQRLRQIESG HQQEVETLKK QVQELKSRLE SQYLTSSLHF NGDFGDEVTS ENSTTRP00000001442/1-1202 QQRLRQIESG HQQEVETLKK QVQELRSRLE SQYLTSSLRF NGDFGDEVTS bmy_01615T0/1-1314 QQRLRQIESG HQQEVETLKK QVQELRSRLE SQYLTSSLRF NGDFGDEVTS BACU003339/1-1209 QQRLRQIESG HQQEVETLKK QVQELRSRLE SQYLTSSLRF NGDFGDEVTS 1201 1250 ENSBTAP00000048361/1-1113 TP-------- WCLRSCTGD- ---------- -GHTVLGPFC PD-------- ENSP00000384651/1-1198 IPDSESNLDQ NCLSRCSTEI FSEASWEQVD KQDTEMTRWL PDHLAAHCYA ENSTTRP00000001442/1-1202 IPDSESILDQ NCLSRCSTEI FSEASWEQVD KQDTEMTRWL PDHLAAHCYA bmy_01615T0/1-1314 IPDSESILDQ NCLSRCSTEI FSEASWEQVD KQDTEMTRWL PDHLAAHCYA BACU003339/1-1209 IPDSESILDQ NCLSRCSTEI FSEASWEQVD KQDTEMTRWL PDHLAAHCYA 1251 1300 ENSBTAP00000048361/1-1113 -----FRDSR K--------- ---------- ---------- ---------- ENSP00000384651/1-1198 CDSAFWLASR KHHCR----- ----NCGNVF CSSCCNQKVP VPSQQLFEPS ENSTTRP00000001442/1-1202 CDSAFWLASR KHHCR----- ----NCGNVF CSSCCNQKVP VPSQQLFEPS bmy_01615T0/1-1314 CDSAFWLASR KHHCRDIDRV DQTWNCGNVF CSSCCNQKVP VPSQQLFEPS BACU003339/1-1209 CDSAFWLASR KHHCRDIDRV DQTWNCGNVF CSSCCNQKVP VPSQQLFEPS 1301 1350 ENSBTAP00000048361/1-1113 ---------- -------GLE ---------- ENSP00000384651/1-1198 RVCKSCYSSL HPTSSSIDLE LDKPIAATSN ENSTTRP00000001442/1-1202 RVCKSCYSSL HPTSSSIDLE LDKPIAATSN bmy_01615T0/1-1314 RVCKSCYSSL HPTSSSIDLE LDKPIAATSN BACU003339/1-1209 RVCKSCYSSL HPTSSSIDLE LDKPIAATSN