KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:55 2014 Check: 00 .. Name: ENSTTRP00000004982/1-818 Len: 946 Check: 6632 Weight: 1.00 Name: bmy_15070T0/1-894 Len: 946 Check: 5704 Weight: 1.00 Name: ENSP00000283179/1-825 Len: 946 Check: 5529 Weight: 1.00 Name: BACU001634/1-513 Len: 946 Check: 5387 Weight: 1.00 Name: ENSBTAP00000048368/1-701 Len: 946 Check: 2665 Weight: 1.00 // 1 50 ENSTTRP00000004982/1-818 MSSSPVNVKK LKVSELKEEL KKRRLSDKGL KAELMERLQA ALDDEEAGGR bmy_15070T0/1-894 MSSSPVNVKK LKVSELKEEL KKRRLSDKGL KAELMERLQA ALDDEEAGGR ENSP00000283179/1-825 MSSSPVNVKK LKVSELKEEL KKRRLSDKGL KAELMERLQA ALDDEEAGGR BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004982/1-818 PAMEPGNGSL DLGGDSAGRS GAGLEQEAAA GGDDDEEEEE EEEEGIAALD bmy_15070T0/1-894 PAMEPGNGSL DLGGDSAGRS GAGLEQEAAA GGDDDEEEEE EEEEGIAALD ENSP00000283179/1-825 PAMEPGNGSL DLGGDSAGRS GAGLEQEAAA GGDEEEEEEE EEEEGISALD BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004982/1-818 GDQMELGEEN GAAGAADSGP MEEEEAASED ENGDDQGFQE GEDELGDEEE bmy_15070T0/1-894 GDQMELGEEN GAAGAADSGP MEEEEAASED ENGDDQGFQE GEDELGDEEE ENSP00000283179/1-825 GDQMELGEEN GAAGAADSGP MEEEEAASED ENGDDQGFQE GEDELGDEEE BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 ---------- ---------- ----EAASED ENGDDQGFQE GEDELGEEEE 151 200 ENSTTRP00000004982/1-818 AAGDENGHGE QQPQPPAAPQ QQPQQQRGAA KEAAGKSSGP TSLFAVTVAP bmy_15070T0/1-894 AAGDENGHGE QQPQPPAAPQ QQPQQQRGAA KEAAGKSSGP TSLFAVTVAP ENSP00000283179/1-825 GAGDENGHGE QQPQPPATQQ QQPQQQRGAA KEAAGKSSGP TSLFAVTVAP BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 GAGDENGHGE QQPQPPAAPQ QQPQQQRGAA KEAAGKSSGP TSLFAVTVAP 201 250 ENSTTRP00000004982/1-818 PGARQGQQQA GGKKKAEGGG GGGRPGAPAA GDGKTEQKGG DKKRGVKRPR bmy_15070T0/1-894 PGARQGQQQA G--------- ---------- GDGKTEQKGG DKKRGVKRPR ENSP00000283179/1-825 PGARQGQQQA GGKKKAEGGG GGGRPGAPAA GDGKTEQKGG DKKRGVKRPR BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 PGARQGQQQA GGKKKAEGGG GGGRPGAPAA GDGKTEQKGG DKKRGVKRPR 251 300 ENSTTRP00000004982/1-818 EDHGRGYFEY IEENKYSRAK SPQPPVEEED EHFDDTVVCL DTX------- bmy_15070T0/1-894 EDHGRGYFEY IEENKYSRAK SPQPPVEEED EHFDDTVVCL DTCFYDKLLK ENSP00000283179/1-825 EDHGRGYFEY IEENKYSRAK SPQPPVEEED EHFDDTVVCL DTY------- BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 EDHGRGYFEY IEENKYSRAK SPQPPVEEED EHFDDTVVCL DTY------- 301 350 ENSTTRP00000004982/1-818 ---------- ---------- ---------- -XXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 YWRDTEAMIW RADTFILDIK RNNMVFDIIA DNCDLHFKIS RDRLSASSLT ENSP00000283179/1-825 ---------- ---------- ---------- -NCDLHFKIS RDRLSASSLT BACU001634/1-513 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048368/1-701 ---------- ---------- ---------- -NCDLHFKIS RDRLSASSLT 351 400 ENSTTRP00000004982/1-818 XXSFAFLWAG GRASYGVSKG KVCFEMKVTE KIPVRHLYTK DIDIHEVRIG bmy_15070T0/1-894 MESFAFLWAG GRASYGVSKG KVCFEMKVTE KIPVRHLYTK DIDIHEVRIG ENSP00000283179/1-825 MESFAFLWAG GRASYGVSKG KVCFEMKVTE KIPVRHLYTK DIDIHEVRIG BACU001634/1-513 MESFAFLWAG GRASYGVSKG KVCFEMKVTE KIPVRHLYTK DIDIHEVRIG ENSBTAP00000048368/1-701 MESFAFLWAG GRASYGVSKG KVCFEMKVTE KIPVRHLYTK DIDIHEVRIG 401 450 ENSTTRP00000004982/1-818 WSLTTSGMLL GEEEFSYGYS LKGIKTCSCE TEDYGEKFDE NDVITCFVNF bmy_15070T0/1-894 WSLTTSGMLL GEEEFSYGYS LKGIKTCNCE TEDYGEKFDE NDVITCFVNF ENSP00000283179/1-825 WSLTTSGMLL GEEEFSYGYS LKGIKTCNCE TEDYGEKFDE NDVITCFANF BACU001634/1-513 WSLTTSGMLL GEEEFSYGYS LKGIKTCNCE TEDYGEKFDE NDVITCFVNF ENSBTAP00000048368/1-701 WSLTTSGMLL GEEEFSYGYS LKGIKTCNCE TEDYGEKFDE NDVITCFANF 451 500 ENSTTRP00000004982/1-818 -SDEV-LSY- KNG-DLGIAF -ISRS--AGR PLXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 ESDEVELSYA KNGQDLGIAF KISKEVLAGR PLFPHVLCHN CAVEFNFGQK ENSP00000283179/1-825 ESDEVELSYA KNGQDLGVAF KISKEVLAGR PLFPHVLCHN CAVEFNFGQK BACU001634/1-513 ESDEVELSYA KNGQDLGIAF KISKEVLAGR PLFPHVLCHN CAVEFNFGQK ENSBTAP00000048368/1-701 ESDEVELSYA KNGQDLGIAF KISKEVLAGR PLFPHVLCHN CAVEFNFGQK 501 550 ENSTTRP00000004982/1-818 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 EKPYFPIPED YTFIQNVPLE DRVRGPKGPE EKKDCEVVMM IGLPGAGKTT ENSP00000283179/1-825 EKPYFPIPEE YTFIQNVPLE DRVRGPKGPE EKKDCEVVMM IGLPGAGKTT BACU001634/1-513 EKPYFPIPED YTFIQNVPLE DRVRGPKGPE EKKDCEVVMM IGLPGAGKTT ENSBTAP00000048368/1-701 EKPYFPIPED YTFIQNVPLE DRVRGPKGPE EKKDCEVVMM IGLPGAGKTT 551 600 ENSTTRP00000004982/1-818 XXXXXXXXXX XXXXXXXXXX XXXXXXVAGF KKQMADTGKL NTLLQRAPQC bmy_15070T0/1-894 WVTKHAAENP GKYNILGTNT IMDKMMVAGF KKQMADTGKL NTLLQRAPQC ENSP00000283179/1-825 WVTKHAAENP GKYNILGTNT IMDKMMVAGF KKQMADTGKL NTLLQRAPQC BACU001634/1-513 WVTKHAAENP GKYNILGTNT IMDKMMVAGF KKQMADTGKL NTLLQRAPQC ENSBTAP00000048368/1-701 WVTKHAAENP GKYNILGTNT IMDKMMVAGF KKQMADTGKL NTLLQRAPQC 601 650 ENSTTRP00000004982/1-818 LGKFIEIAAR KKRNFILDQT NVSAAAQRRK MCLFAGFQRK AVVVCPKDED bmy_15070T0/1-894 LGKFIEIAAR KKRNFILDQT NVSAAAQRRK MCLFAGFQRK AVVVCPKDED ENSP00000283179/1-825 LGKFIEIAAR KKRNFILDQT NVSAAAQRRK MCLFAGFQRK AVVVCPKDED BACU001634/1-513 LGKFIEIAAR KKRNFILDQT NVSAAAQRRK MCLFAGFQRK AVVVCPKDED ENSBTAP00000048368/1-701 LGKFIEIAAR KKRNFILDQT NVSAAAQRRK MCLFAGFQRK AVVVCPKDED 651 700 ENSTTRP00000004982/1-818 YKQRTQKKAE VEGKDLPEHA VLKMKXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 YKQRTQKKAE VEGKDLPEHA ---------- ---------- ------KEEA ENSP00000283179/1-825 YKQRTQKKAE VEGKDLPEHA VLKMKGNFTL PEVAECFDEI TYVELQKEEA BACU001634/1-513 YKQRTQKKAE VEGKDLPEHA VLKMKGNFTL PEVAECFDEI TYVELQKEEA ENSBTAP00000048368/1-701 YKQRTQKKAE VEGKDLPEHA VLKMKGNFTL PEVAECFDEI TYVELQKEEA 701 750 ENSTTRP00000004982/1-818 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 QKLLEQYKEE SKKALPPEKK QNTGSKKSNK NKSGKNQFNR GGGHRGRGGF ENSP00000283179/1-825 QKLLEQYKEE SKKALPPEKK QNTGSKKSNK NKSGKNQFNR GGGHRGRGGF BACU001634/1-513 QKLLEQYKEE SKKALPPEKK QNTGSKKSNK NKSGKNQFNR GGGHRGRGGF ENSBTAP00000048368/1-701 QKLLEQYKEE SKKALPPEKK QNTGSKKSNK NKSGKNQFNR GGGHRGRGGF 751 800 ENSTTRP00000004982/1-818 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15070T0/1-894 NMR------- APGNRGGYNR RGNMPQRGGG GGGSGGIGYP YPRGPVFPSR ENSP00000283179/1-825 NMRGGNFRGG APGNRGGYNR RGNMPQRGGG GGGSGGIGYP YPRAPVFPGR BACU001634/1-513 NMRGGNFRGG APGNRGGYNR RGNMPQRGGG GGGSGGIGYP YPRGPVFPSR ENSBTAP00000048368/1-701 NMRGGNFRGG APGNRGGYNR RGSMPQRGGG GGGSGGIGYP YPRGPVFPSR 801 850 ENSTTRP00000004982/1-818 XXXXXXXXXX XXXXXXXXXX XXNFRGRGNN CGYKNQSQGY NQWQQG---- bmy_15070T0/1-894 GGYSNRGNYN RGGMPNRGNY NQNFRGRGNN RGYKNQSQGY NQWQQGVTIL ENSP00000283179/1-825 GSYSNRGNYN RGGMPNRGNY NQNFRGRGNN RGYKNQSQGY NQWQQG---- BACU001634/1-513 GGYSNRGNYN RGGMPNRGNY NQNFRGRGNN RGYKNQSQGY NQWQQG---- ENSBTAP00000048368/1-701 GGYSNRGNYN RGGMPNRGNY NQNFRGRGNN RGYKNQSQGY NQWQQG---- 851 900 ENSTTRP00000004982/1-818 ---------- ---------- --------QF WGRKPWSQHY HQGYY----- bmy_15070T0/1-894 GSEAMESALS PRILLNTQIK RTDTYFSKTF TRSRLFKVNL DLGFVHTEVS ENSP00000283179/1-825 ---------- ---------- --------QF WGQKPWSQHY HQGYY----- BACU001634/1-513 ---------- ---------- --------QF WGQKPWSQHY HQGYY----- ENSBTAP00000048368/1-701 ---------- ---------- --------QF WGQKPWSQHY HQGYY----- 901 950 ENSTTRP00000004982/1-818 ---------- ---------- ---------- ---------- ------ bmy_15070T0/1-894 CVWVFCAQDG SIAAAAAAVG LFSFRIKMTV SGCEHILKVA FSDVMP ENSP00000283179/1-825 ---------- ---------- ---------- ---------- ------ BACU001634/1-513 ---------- ---------- ---------- ---------- ------ ENSBTAP00000048368/1-701 ---------- ---------- ---------- ---------- ------