KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:58:56 2014 Check: 00 ..
Name: ENSBTAP00000048404/1-177 Len: 276 Check: 1223 Weight: 1.00
Name: ENSP00000249861/1-257 Len: 276 Check: 3156 Weight: 1.00
Name: bmy_05047T0/1-268 Len: 276 Check: 9717 Weight: 1.00
Name: BACU017949/1-235 Len: 276 Check: 7877 Weight: 1.00
Name: ENSTTRP00000013358/1-249 Len: 276 Check: 2719 Weight: 1.00
//
1 50
ENSBTAP00000048404/1-177 ---------- ----MRCGNT TKSGKLLFR- -FPKGPGRAT AVGPLR----
ENSP00000249861/1-257 -------MPA RCVAAHCGNT TKSGKSLFR- -FPKDRAVRL LWDRFV----
bmy_05047T0/1-268 MGPREICIPL PVAPCSQGKL QGGGGSPRAG YFPR------ -WGRSSALPA
BACU017949/1-235 -------MPA RCVAAHCGNT TTSGNSLFR- -FPKDRAVRL LWGRFV----
ENSTTRP00000013358/1-249 -------MPE E-------DV FTSGKSLFR- -FPKDRAVRL LWDRFV----
51 100
ENSBTAP00000048404/1-177 ---AGPP--A NWYRGSDSSV ICSEHFAPAC FDVSSVIQKN LPFSERLRPV
ENSP00000249861/1-257 ---RGCR--A DWYGGNDRSV ICSDHFAPAC FDVSSVIQKN LRFSQRLRLV
bmy_05047T0/1-268 AGGRGRRQGV DWYEANDSSV ICSDHFAPAC FDVSSVIPKN LRFSQRLRFV
BACU017949/1-235 ---RSRR--A DWYEGNDISV ICSDHFATAC FDVSSVIQKN LRFSQRLRFV
ENSTTRP00000013358/1-249 ---RGRR--A DWYEGNGRSV ICSDHFAPAC FDVSSVIQKN LRFSQRLRLV
101 150
ENSBTAP00000048404/1-177 AGAASILHSV SSLLKPTGKE EGDCAGGLGR EESPRQSGSP RLPQGQPRVH
ENSP00000249861/1-257 AGAVPTLHRV PAPA-PKRGE EGDQAGRLDT RGELQAARHS EAAPGPVSCT
bmy_05047T0/1-268 AGAVPTLHRV SSPV-SKGQE EGDGVGGPEQ GGEPQAVRQP EAAPRPACCT
BACU017949/1-235 AGAVPTLHRV SSPA-PKGQE EGDGAGGPEQ GGEPQAVRQP EAAPGPACCT
ENSTTRP00000013358/1-249 AGAVPTLHRV SSPA-SKG-E EGDGAGGPEK GGEPQAVRQP EAAPGPACCT
151 200
ENSBTAP00000048404/1-177 SSGPRRGLSA SQIKGHS--- ---------- ---------- ----------
ENSP00000249861/1-257 RPRAGKQAAA SQITCENELV QTQPHADNPS NTVTSVPTHC EEGPVHKSTQ
bmy_05047T0/1-268 LFRARKRAAA SQIAHENQVI QTQVHADNLS NDVTSVPTHC EEGPVRKSTQ
BACU017949/1-235 LLRARKRAAA SQIAHENQVT QTQVHADNLS NDVTSVPTH- ----------
ENSTTRP00000013358/1-249 LLWARKRAKA SQIAHENQVI QTQVHADNLS NDVTSVPTHC EEGPVHKSTQ
201 250
ENSBTAP00000048404/1-177 ---KSPPRVL QEPQSVARLL YLMLSWKSHL TTKVFVNR-- ----------
ENSP00000249861/1-257 ISLKRPRHRS VGIQAKVKAF GKRLCNATTQ TEELWSRTSS LFDIYSSDSE
bmy_05047T0/1-268 ISLKRPPHYS VGIQAKVKVF GTRLCNATTQ TDDLWSRTSS LFDTYSSDSE
BACU017949/1-235 ---------- -GIQTKVKVF GTRLCNATTQ TDELWSRTSS LFDTYSGDSE
ENSTTRP00000013358/1-249 ISLKRPPHYS VGIQAKVKVF GTRLCNATTQ TDELWSRTSS LFDSYSSDSE
251 300
ENSBTAP00000048404/1-177 ---------- ---------- ------
ENSP00000249861/1-257 TDTDWDIKSE QSDLSYMAVQ VKEETC
bmy_05047T0/1-268 TDEDWDIKSE QSDLSYIAVQ VKEETC
BACU017949/1-235 TDEDWDIKSE QSDLSYIAVQ VKEETC
ENSTTRP00000013358/1-249 TDEDWNIKSE QSDLSYIAVQ VKEETC