KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:58:56 2014 Check: 00 .. Name: ENSBTAP00000048404/1-177 Len: 276 Check: 1223 Weight: 1.00 Name: ENSP00000249861/1-257 Len: 276 Check: 3156 Weight: 1.00 Name: bmy_05047T0/1-268 Len: 276 Check: 9717 Weight: 1.00 Name: BACU017949/1-235 Len: 276 Check: 7877 Weight: 1.00 Name: ENSTTRP00000013358/1-249 Len: 276 Check: 2719 Weight: 1.00 // 1 50 ENSBTAP00000048404/1-177 ---------- ----MRCGNT TKSGKLLFR- -FPKGPGRAT AVGPLR---- ENSP00000249861/1-257 -------MPA RCVAAHCGNT TKSGKSLFR- -FPKDRAVRL LWDRFV---- bmy_05047T0/1-268 MGPREICIPL PVAPCSQGKL QGGGGSPRAG YFPR------ -WGRSSALPA BACU017949/1-235 -------MPA RCVAAHCGNT TTSGNSLFR- -FPKDRAVRL LWGRFV---- ENSTTRP00000013358/1-249 -------MPE E-------DV FTSGKSLFR- -FPKDRAVRL LWDRFV---- 51 100 ENSBTAP00000048404/1-177 ---AGPP--A NWYRGSDSSV ICSEHFAPAC FDVSSVIQKN LPFSERLRPV ENSP00000249861/1-257 ---RGCR--A DWYGGNDRSV ICSDHFAPAC FDVSSVIQKN LRFSQRLRLV bmy_05047T0/1-268 AGGRGRRQGV DWYEANDSSV ICSDHFAPAC FDVSSVIPKN LRFSQRLRFV BACU017949/1-235 ---RSRR--A DWYEGNDISV ICSDHFATAC FDVSSVIQKN LRFSQRLRFV ENSTTRP00000013358/1-249 ---RGRR--A DWYEGNGRSV ICSDHFAPAC FDVSSVIQKN LRFSQRLRLV 101 150 ENSBTAP00000048404/1-177 AGAASILHSV SSLLKPTGKE EGDCAGGLGR EESPRQSGSP RLPQGQPRVH ENSP00000249861/1-257 AGAVPTLHRV PAPA-PKRGE EGDQAGRLDT RGELQAARHS EAAPGPVSCT bmy_05047T0/1-268 AGAVPTLHRV SSPV-SKGQE EGDGVGGPEQ GGEPQAVRQP EAAPRPACCT BACU017949/1-235 AGAVPTLHRV SSPA-PKGQE EGDGAGGPEQ GGEPQAVRQP EAAPGPACCT ENSTTRP00000013358/1-249 AGAVPTLHRV SSPA-SKG-E EGDGAGGPEK GGEPQAVRQP EAAPGPACCT 151 200 ENSBTAP00000048404/1-177 SSGPRRGLSA SQIKGHS--- ---------- ---------- ---------- ENSP00000249861/1-257 RPRAGKQAAA SQITCENELV QTQPHADNPS NTVTSVPTHC EEGPVHKSTQ bmy_05047T0/1-268 LFRARKRAAA SQIAHENQVI QTQVHADNLS NDVTSVPTHC EEGPVRKSTQ BACU017949/1-235 LLRARKRAAA SQIAHENQVT QTQVHADNLS NDVTSVPTH- ---------- ENSTTRP00000013358/1-249 LLWARKRAKA SQIAHENQVI QTQVHADNLS NDVTSVPTHC EEGPVHKSTQ 201 250 ENSBTAP00000048404/1-177 ---KSPPRVL QEPQSVARLL YLMLSWKSHL TTKVFVNR-- ---------- ENSP00000249861/1-257 ISLKRPRHRS VGIQAKVKAF GKRLCNATTQ TEELWSRTSS LFDIYSSDSE bmy_05047T0/1-268 ISLKRPPHYS VGIQAKVKVF GTRLCNATTQ TDDLWSRTSS LFDTYSSDSE BACU017949/1-235 ---------- -GIQTKVKVF GTRLCNATTQ TDELWSRTSS LFDTYSGDSE ENSTTRP00000013358/1-249 ISLKRPPHYS VGIQAKVKVF GTRLCNATTQ TDELWSRTSS LFDSYSSDSE 251 300 ENSBTAP00000048404/1-177 ---------- ---------- ------ ENSP00000249861/1-257 TDTDWDIKSE QSDLSYMAVQ VKEETC bmy_05047T0/1-268 TDEDWDIKSE QSDLSYIAVQ VKEETC BACU017949/1-235 TDEDWDIKSE QSDLSYIAVQ VKEETC ENSTTRP00000013358/1-249 TDEDWNIKSE QSDLSYIAVQ VKEETC