KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:14 2014 Check: 00 .. Name: ENSTTRP00000013012/1-795 Len: 932 Check: 9364 Weight: 1.00 Name: ENSP00000430024/1-932 Len: 932 Check: 1736 Weight: 1.00 Name: bmy_12388T0/1-834 Len: 932 Check: 9491 Weight: 1.00 Name: ENSBTAP00000048524/1-810 Len: 932 Check: 5479 Weight: 1.00 // 1 50 ENSTTRP00000013012/1-795 MAALQRRRHY SVLLLLFMLL GTLWEAGAGQ IHYSIPEELD KASFVGNIAK ENSP00000430024/1-932 MAAQPRGGDY RGFFLLSILL GTPWEAWAGR ILYSVSEETD KGSFVGDIAK bmy_12388T0/1-834 MATRERGGDY RGFILLSILL GTQREVSAGH ILYSIPEETD TGSFVGNIAK ENSBTAP00000048524/1-810 MAARQRGGDY RAFILLSILL GTQSEVWAAQ ILYSVPEETE TASFVGNIAK 51 100 ENSTTRP00000013012/1-795 DLGLEPRELA ERGVRIVHRG RTQLFALNPQ SGSLVTAGRI DREELCAQSE ENSP00000430024/1-932 DLGLEPRELA ERGVRIISRG RTQLFALNQR SGSLVTAGRI DREEICAQSA bmy_12388T0/1-834 DLGLEPWELE ERGVRIVSRG RTQLFALNPR SGSLVTAGRI DREELCAQSV ENSBTAP00000048524/1-810 DLGLEPKDLE ERGVRIVSRG RTQLFSLNPR SGSLVTAGRI DREELCAQSA 101 150 ENSTTRP00000013012/1-795 PCLVSFNILV EDKLNLYPVE VEIVDINDNA PRFLREELEV KIIENAALSS ENSP00000430024/1-932 RCLVNFNILM EDKMNLYPID VEIIDINDNV PRFLTEEINV KIMENTAPGV bmy_12388T0/1-834 RCLVNFNILM EDKMNLYPIE VEIIDVNDNA PKFLTEEMNV KIMENTAPGV ENSBTAP00000048524/1-810 RCLVNFNILV EDKMNLYRIE VEIMDINDNA PKFLTEEMNV KIMENTAPGV 151 200 ENSTTRP00000013012/1-795 RFPLMEVYDP DVGVNSLQGF KLSGNSHFSV DVPSEANGPK YPELVLERAL ENSP00000430024/1-932 RFPLSEAGDP DVGTNSLQSY QLSPNRHFSL AVQSGDDETK YPELVLERVL bmy_12388T0/1-834 RFPLNEARDP DVGTNSLQSY HLNPNRYFSL VVQTGEDGTK YPELVLERVL ENSBTAP00000048524/1-810 RFPLNEARDP DVGTNSLQSY HLSPNRHFSL VVHTGEDGTK YPELVLEQVL 201 250 ENSTTRP00000013012/1-795 DREREAIHRL VLTAVDGGDP VRSGVARILV TVLDANDNAP VFTQSVYRVS ENSP00000430024/1-932 DREEERVHHL VLTASDGGDP PRSSTAHIQV TVVDVNDHTP VFSLPQYQVT bmy_12388T0/1-834 DREEVTAHHL LLTASDGGDP PRSGTARVQV TVVDVNDHAP VFSLPQYQVT ENSBTAP00000048524/1-810 DREEVATHHL LLTASDGGDP PRSGTARVQV TAVDVNDHAP IFSLPQYQVT 251 300 ENSTTRP00000013012/1-795 VPENLPVGTP VLSVNARDQD EGAHAEVTYS FVRITEKISK TFCLNVLTGE ENSP00000430024/1-932 VPENVPVGTR LLTVHAIDLD EGVNGEVTYS FRKITPKLPK MFHLNSLTGE bmy_12388T0/1-834 VPENVPVGTR LLTVNAIDLD EGVNGEVTYS FRKITPKILQ IFQLNSHTGE ENSBTAP00000048524/1-810 VPENVPVGTR LLTISAIDLD EGVNGEVTYS FPKITPKILQ IFQLNSHTGE 301 350 ENSTTRP00000013012/1-795 ISTSANLDYE DSSFYELDVE ARDRPGLQDR AKVLISILDV NDNVPEVVVT ENSP00000430024/1-932 ISTLEGLDYE ETAFYEMEVQ AQDGPGSLTK AKVLITVLDV NDNAPEVTMT bmy_12388T0/1-834 LSTLDGLDYE DSGYYEMEVQ AQDGPGRMTR AKVLITILDV NDNAPEMTVT ENSBTAP00000048524/1-810 LSTLDGLDYE ESGYYEMEVQ AQDGPGSMTR AKVLITILDV NDNAPEVTVT 351 400 ENSTTRP00000013012/1-795 SGSRSVAEST LPGTVIVLFQ VYDRDSGLNG LVTCSISRSL PFELEKSVDN ENSP00000430024/1-932 SLSSSIPEDT PLGTVIALFY LQDRDSGKNG EVTCTIPENL PFKLEKSIDN bmy_12388T0/1-834 SVSSSVPEDT PPGTVIALFY LQDRDSGKNG QVTCTISENL PFKLERSIDN ENSBTAP00000048524/1-810 SVSSSIPEDT PPGTVVALFY LQDRDSGKNG QVTCTISEDL PFKLERSIDN 401 450 ENSTTRP00000013012/1-795 YYRLVTNTVL DREQVSSYNI TVTATDQGIP SLSTEMLISL NVADINDNPP ENSP00000430024/1-932 YYRLVTTKNL DRETLSLYNI TLKATDGGTP PLSRETHIFM QVADTNDNPP bmy_12388T0/1-834 YYRLVTAKNL DREKFSVYNI TLKATDGGSP PLSTETHISM NVADTNDNPP ENSBTAP00000048524/1-810 YYRLVTAENL DREKFSAYNI TLKATDGGSP PLSTTTHITM NVADTNDNPP 451 500 ENSTTRP00000013012/1-795 VFPHTSYSVY IPENNPRGAS IFSVTAHDPD SHENAQVTYS LAEDTVQGGP ENSP00000430024/1-932 TFPHSSYSVY IAENNPRGAS IFLVTAQDHD SEDNAQITYS LAEDTIQGAP bmy_12388T0/1-834 AFPHSSYSIF VPENNPRGTS IFSVTARDPD SNENARVTYS VSEDTLQGPS ENSBTAP00000048524/1-810 AFLHSSYFVY VPENNPRGTS IFSVTAHDPD SNENARVTYS LSEDTLQGPS 501 550 ENSTTRP00000013012/1-795 LSSYISINSD TGVLYALHSF DCEQFRDLQL RVIASDSGDP PLSSNVSLSI ENSP00000430024/1-932 VSSYVSINSD TGVLYALQSF DYEQLRELQL RVTAHDSGDP PLSSNMSLSL bmy_12388T0/1-834 VSSYVSINSN TGVLYALHSF DYEQFHDLQL RVTASDSGDP PLSSNVSLSI ENSBTAP00000048524/1-810 VSSYVSINSG TGVLYALHSF DYEQFRDLQL RVTASDSGDP PLSSNVSLSI 551 600 ENSTTRP00000013012/1-795 FVLDQNDNTP EILYPALPTD GSTGVELAPR SAEPGYLVTK VVAVDRDSGQ ENSP00000430024/1-932 FVLDQNDNPP EILYPALPTD GSTGMELAPR SAEPGYLVTK VVAVDKDSGQ bmy_12388T0/1-834 FVLDQNDNTP EILYPALPTD GSTGVELAPR SAEPGYLVTK VVAVDRDSGQ ENSBTAP00000048524/1-810 FVLDQNDNTP EILYPSLPTD GSTGVELAPR SAEPGYLVTK VVAVDRDSGQ 601 650 ENSTTRP00000013012/1-795 NAWLSYRLLK ASEPGLFAVG LHTGEVRTAR ALLDRDALKQ TLVVAVQDHG ENSP00000430024/1-932 NAWLSYLLLK ASEPGLFAVG LYTGEVRTAR ALLDRDALKQ SLVVAVQDHG bmy_12388T0/1-834 NAWLSYRLLK ASEPGLFAVG LHTGEVRTAR ALLDRDALKQ SLVVAVQDHG ENSBTAP00000048524/1-810 NAWLSYRLLK ASEPGLFVVG LHTGEVRTAR ALLDRDALKQ SLVVAVQDHG 651 700 ENSTTRP00000013012/1-795 QPPLSATVTL TVAVADSLPD VLADLGSLEV PHDSDPSGLT LYLVVAVAAV ENSP00000430024/1-932 QPPLSATVTL TVAVADSIPE VLADLGSLEP SDGPYNYDLT LYLVVAVATV bmy_12388T0/1-834 QPPLSATVTL TVAVADSIPD VLADLGSLER SADSGDSSLT LYLVMAVAVV ENSBTAP00000048524/1-810 QPPLSATVTL TVAVADSIPD VLADLGGPEV PHDSDASGLT LYLVVAVAAV 701 750 ENSTTRP00000013012/1-795 SCVFLAFVIV LLALRLRRWQ RSHVLQASGG VPAGLPASHF VGVDGVRAFL ENSP00000430024/1-932 SCVFLAFVLV LLALRLRRWH KSRLLQASEG GLANVPTSHF VGMDGVQAFL bmy_12388T0/1-834 SCVFLAFVVV LLALRLRRWH TSRLLQASGG GLEGVPASHF VGVDGVRAFL ENSBTAP00000048524/1-810 SCVFLAFVIV LLALRLRRWR RSHMLQASGG VPGSVPASQF VGVDGVQAFL 751 800 ENSTTRP00000013012/1-795 QTYSHEVSLT ADSR-SHVIF PQPNYADTLI SQESCEKSEP LLIQED---- ENSP00000430024/1-932 QTYSHEVSLT ADSRKSHLIF PQPNYVDMLI SQESCEKNDS LLTSVDFQEC bmy_12388T0/1-834 QTYSHEVSLT ADSRRNQVIF PQPNYADTLV SQESCEKKDP LLTSIDFHEC ENSBTAP00000048524/1-810 QTYSHEVSLT ADSRRSHVIF PQPNYADTLI SQESYEKKDP LLTSIDFLEC 801 850 ENSTTRP00000013012/1-795 ---------- ---------- ---------- ---------- ---------- ENSP00000430024/1-932 KENLPSIQQA PPNTDWRFSQ AQRPGTSGSQ NGDDTGTWPN NQFDTEMLQA bmy_12388T0/1-834 KDKTQSIQVS ---------- ---------- ---------- ---------- ENSBTAP00000048524/1-810 KDEAHSIQVS ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000013012/1-795 ---------- ---------- ---------- ---------- ---------- ENSP00000430024/1-932 MILASASEAA DGSSTLGGGA GTMGLSARYG PQFTLQHVPD YRQNVYIPGS bmy_12388T0/1-834 ---------- ---------- ---------- ---SVIHLSL YSSKNYILCK ENSBTAP00000048524/1-810 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000013012/1-795 ---------- ---------- ---------- -- ENSP00000430024/1-932 NATLTNAAGK RDGKAPAGGN GNKKKSGKKE KK bmy_12388T0/1-834 FLYCFTK--- ---------- ---------- -- ENSBTAP00000048524/1-810 ---------- ---------- ---------- --