KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:17 2014 Check: 00 .. Name: ENSP00000392700/1-861 Len: 882 Check: 6455 Weight: 1.00 Name: ENSBTAP00000048564/1-807 Len: 882 Check: 5111 Weight: 1.00 Name: bmy_19343T0/1-804 Len: 882 Check: 7820 Weight: 1.00 Name: ENSTTRP00000013987/1-846 Len: 882 Check: 5105 Weight: 1.00 // 1 50 ENSP00000392700/1-861 MELKRGKTFI KSSLQVSHEK PPDPAAVAAA REGTGPWSVL PGGQQRPHSE ENSBTAP00000048564/1-807 MELKRGKTFI KSSLQTDHEK PPDPAATALT TED----AIS LGGQQLPHSE bmy_19343T0/1-804 MELKRGKTFI KSSLQIDHEK PPDPATAAPA TED----AVS PGGQQRPHSE ENSTTRP00000013987/1-846 MELKRGKTFI KSSLQIDHEK PPDAAATAPA TED----AVS PGGQQRPHSE 51 100 ENSP00000392700/1-861 KGPQASPSAQ EYDRCPNKGA QLDPKGGPAA LCGATFKPVR KCKTHDSMSG ENSBTAP00000048564/1-807 RGPQVSPSTQ GYNRCSDREA QPDTNGGPAA LCGTTFKLVR KSKNHDSVPR bmy_19343T0/1-804 RGPQVSPSTQ GYDRCSDKGA QPDANGGPAA LCGTTFKLVQ KSKTHDSVPR ENSTTRP00000013987/1-846 RGPQVSPSTQ GYDRCSDKGA QPDANGGPAA LCGTTFKLVQ KSKTQDTVPR 101 150 ENSP00000392700/1-861 AGRATAATGQ LVGSASFPGS PGSRRMIDYR HFVPQMPFVP AVAKSIPRKR ENSBTAP00000048564/1-807 ADRAATATGQ LVGSASFPGT PSSQRMIDYR HFVPQMPFVP AVAKSIPRKR bmy_19343T0/1-804 ADRAAAATGQ LVGSASFPGP PRSQRMIDYR HFVPQMPFVP AVAKSIPRKR ENSTTRP00000013987/1-846 ADRAAAATGQ LVGSASFPGP PRSQRMIDYR HFVPQMPFVP AVAKSIPRKR 151 200 ENSP00000392700/1-861 ISLKRPKKCF RNLFHIRRNK TEDLASLAAE GKSLPSPGDP SDPGGRRSKA ENSBTAP00000048564/1-807 ISLKRPKKCF RNLFHIRRNK TENLPS--TK GEGLSSPEGP SETGGQRGIA bmy_19343T0/1-804 ISLKRPKKCF RNLFHIRRNK TENLASLTTK GKSLSSPEGP SEAGGQQGTA ENSTTRP00000013987/1-846 ISLKRPKKCF RNLFHIRRNK TENLASLATK GKSLSSPEGP SEAGGQQGTA 201 250 ENSP00000392700/1-861 FLPPGEGPGL DGLCQDLLDS ELLADASFGL CRALCEDVAS LQSFDSLTGC ENSBTAP00000048564/1-807 FLPLGEELGL DGQCQDLSDS EFLPDSSFDL CRALCEDVAS LKSFDSLTGC bmy_19343T0/1-804 CFPLGEGLGL DSLCQDLSDS EFLPDSSFDL CRALCEDVAS LKSFDSLTGC ENSTTRP00000013987/1-846 CFPLGEGLGL DSLCQDLSDS EFLPDSSFDL CRALCEDVAS LKSFDSLTGC 251 300 ENSP00000392700/1-861 GEVFADESSV PSLELNEGPE SPTQAAQGLE SKVPRGPLQG SVEQLASPAQ ENSBTAP00000048564/1-807 GEIFADESSV PSLELNEGLA SPAQRSQASD SKTFRGPFQG SREQLASPAQ bmy_19343T0/1-804 GEIFADESSV PSLELHEGLE SPARASQAPD SMASRGPFQG SVEQLASPAQ ENSTTRP00000013987/1-846 GEIFADESSV PSLELHEGLE SPARASQAPD CMASRGPFQG SVEQLASPAQ 301 350 ENSP00000392700/1-861 NEASDFTRFW DSVNRSVRQQ QRALLGPWLS GPQGTDRDQS RLDTAGLAEL ENSBTAP00000048564/1-807 NEMSDFAKFW DHVNHSVRQQ QHALLGPWLG GPQASDTDQP RPDAARLAEL bmy_19343T0/1-804 NEMSDFDKFW DRVNHSVRQQ QRALLGPWLG GPQGSDTDKP RPDASGLAEL ENSTTRP00000013987/1-846 NEMSDFDKFW DRVNHSVRQQ QRALLGPWLG GPQGSDTDKP RPDAAGLAEL 351 400 ENSP00000392700/1-861 PLCPCRDPRS GSKASSIDTG TPKSEQPESV STSDEGYYDS FSPGLEEDKK ENSBTAP00000048564/1-807 PLCPCRDPHS SSKASSTDTG TPKSERPESV STSDEGYYDS FSPGLEEDKK bmy_19343T0/1-804 PLCPCRDPHS GSKASSIDTG TPKSERPESV STSDEGYYDS FSPGLEEDKK ENSTTRP00000013987/1-846 PLCPCRDPHG GSKASSIDTG TPKSERPESV STSDEGYYDS FSPGLEEDKK 401 450 ENSP00000392700/1-861 EAESPGTPAA TFPRDSYSGD ALYELFHDPS EGPLGPSPDD DLCVSESLSG ENSBTAP00000048564/1-807 EAPSPGTPTA AFPRDSYSGD ALYELFYDPA EGPGSPSLDD DLCVSESPSG bmy_19343T0/1-804 EAPSPGTPAA AFPRDSYSGD ALYELFYDPT EGPGSPNLDD DLCVSESLSG ENSTTRP00000013987/1-846 EAPSPGTPAA AFPRDSYSGD ALYELFYDPT EGPGSPSLDD DLCVSESLSG 451 500 ENSP00000392700/1-861 PALGTPLSIC SFRVGAEENL APAPGPDLLS QGFLQSSWKG KECLLKLCDT ENSBTAP00000048564/1-807 PAPGAPLSMC SFHVGAEENL APVPGPDLLS QGFLQSSWRG KECLLKLCDT bmy_19343T0/1-804 PALGAPLSMC SFHVGAEENL AAAPGPDLLS QSFLQSSWRG KECLLKLCDT ENSTTRP00000013987/1-846 PALGAPLSMC SFHVGAEENL AAAPGPDLLS QSFLQSSWRG KECLLKLCDT 501 550 ENSP00000392700/1-861 ELAITMGIVS WLRRGPTPRA PP--TPGQPA APPGSQ-GAP RAPTE----- ENSBTAP00000048564/1-807 ELAITMGIIN WLRRGPELRA LPASALREPA TPSGGLVEKP GAGSEKMGLG bmy_19343T0/1-804 ELAITMGIIN WLRRSPELRA PPASAPREPA APPEGLVEKP GAGSEKVCLG ENSTTRP00000013987/1-846 ELAITMGIIN WLRRSPELRV PPASAPREPA TPPGS--EVP RV-------- 551 600 ENSP00000392700/1-861 --KLGGREGL ASDAGGATVC SAPSRQELWA HPGTTGLLAG ESKALGGATQ ENSBTAP00000048564/1-807 PVKLDGRGPQ ALDAGRISVS SIPSRKELWA CSGPKGLLAG VSKVLAGAKQ bmy_19343T0/1-804 PVKLEGGGTR ALDAGRTSVS SAPSRQELWA CSGTKGLPAG VSEVLAGAKQ ENSTTRP00000013987/1-846 --KLEGGGTR ALDAGRTSVS SAPSRQELWA CSGPKGPLAG VSEVLAGTKQ 601 650 ENSP00000392700/1-861 GTGTLSRDA- ------SREE ETRGHSEGLF SSMESAATST TDTSGKNKAP ENSBTAP00000048564/1-807 ETKSSSCDPS LECVPVSGER GTQGHPEGSF SPLGSAAAMG SNTFRKNKVP bmy_19343T0/1-804 GTSSPSRDPS LECVQVSGEE GTQGHPEGSL SSVGSATPVA TNTSSKNKVP ENSTTRP00000013987/1-846 GTSSPSRDP- ------PREE GTQGHPEGSF SSVGSAAPMA TNTSSKNKVP 651 700 ENSP00000392700/1-861 VPSTWPCSQK EPGPPGVLGC FRGPWRPGHG GDTLDAEPML AGCVARVAAL ENSBTAP00000048564/1-807 HPSVWPGSQ- EPRLPRNLGC FQGPWRPGPG GSTMDSKLTL TGCVAQVEAL bmy_19343T0/1-804 NPSAWPGSQ- EPRLPGNLGC FQGPWRPGLG GSTVDSELTL TGCVAQVAAL ENSTTRP00000013987/1-846 NPSAWPGSQ- EPSFPGNLGC FQGPWRPGLG GSTVDLELTL TGCVARVAAL 701 750 ENSP00000392700/1-861 KISSNEQPPA AWPPRQDMGS GLFGQRWARG PDMLEQKQSS SSPSMTTIHG ENSBTAP00000048564/1-807 QINPDCQSPA AHPPRQNTGS GLCGKPQARG PDILQQEQPN GFPNLAAICG bmy_19343T0/1-804 QIHPDCQ--- --PPRQNTDS GLCGQPQARG PDILPQKQPN SFPSTAAICG ENSTTRP00000013987/1-846 QIHPDCQ--- --PPRQNTGS GLRGQPQARG PDVLQQKQPD SFPSMAALCG 751 800 ENSP00000392700/1-861 LPYSAS---- TQDQRCRDRV QDLSWLRVEP TGLGVQAWAS VEDQPLQLST ENSBTAP00000048564/1-807 LPSLANPLHI PQDQRCPGSI LDLSQLREEP TTLNVQAHVS VEDRPLQLNS bmy_19343T0/1-804 LPSLASPLHS PQDQRCPGRI LDLSQIRVEP ARLDAQAHAS VEDQPLQLSS ENSTTRP00000013987/1-846 LPSLASPLHS PQDQRCPGRI LDLSQIRVEP ARLDAQAHAS VEDQPLQLSS 801 850 ENSP00000392700/1-861 EAVEQVAHGS QLDSEPRSAP AARWSSQGHH PESLGLTLNS QQEGGVSASA ENSBTAP00000048564/1-807 RAMEQAAQRR QLDL------ ---------- ---------- ---------- bmy_19343T0/1-804 RAIEQAAHRS QLDP------ ---------- ---------- ---------- ENSTTRP00000013987/1-846 RAIEQAAHRS QLDSPSPAAW -------DHL PGILALTSNS QWEGAHSASA 851 900 ENSP00000392700/1-861 PECRCSLLAR EGLLCGQPEV GASGPAMAEP HL ENSBTAP00000048564/1-807 ---------- ---------- ---------- -- bmy_19343T0/1-804 ---------- ---------- ---------- -- ENSTTRP00000013987/1-846 PESRCSFLDH EGILCNQQEV GPPRPTAETH LW