KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:18 2014 Check: 00 .. Name: ENSP00000299957/1-436 Len: 474 Check: 3664 Weight: 1.00 Name: ENSTTRP00000014421/1-435 Len: 474 Check: 9382 Weight: 1.00 Name: ENSBTAP00000048585/1-380 Len: 474 Check: 206 Weight: 1.00 Name: bmy_12692T0/1-358 Len: 474 Check: 529 Weight: 1.00 Name: BACU020305/1-401 Len: 474 Check: 4873 Weight: 1.00 // 1 50 ENSP00000299957/1-436 MVGFGANRRA GRLPSLVLVV LLVVIVVLAF NYWSISSRHV LLQEEVAELQ ENSTTRP00000014421/1-435 MVGFGANRRA GRLPSFVLVV LLVVIAVLAF NYWRISSRHV LLQEEVAELQ ENSBTAP00000048585/1-380 MVGFGANRRA GRLPSLVLAV LLVVIAVLAF NYWSISSRHV LLQEEVAELQ bmy_12692T0/1-358 MVGFGANRRA GRLPSFVLVV LLVVIAVLAF NYWSISSRHV LLQEEVAELQ BACU020305/1-401 MVGFGANRRA GRLPSFVLVV LLVVIAVLAF NYWSISSRHV LLQEEVAELQ 51 100 ENSP00000299957/1-436 GQVQRTEVAR GRLEKRNSDL LLLVDTHKKQ IDQKEADYGR LSSRLQAREG ENSTTRP00000014421/1-435 GQVQRTEVAR GRLEKRN-DL LLLVDSHKKQ IDQXXXXXXX XXXXXXXXXX ENSBTAP00000048585/1-380 GQVQRTEVAR GRLEKRNSDL LLLVDSHKKQ IDQKEADYGR LSSRLQAREG bmy_12692T0/1-358 GQVQRTEVAR GRLEKRNSDL LLLVDSHKKQ IDQKEADYGR LSSRLQAREG BACU020305/1-401 GQVQRTEVAR GRLEKRNSDL LLLVDSHKKQ IDQKEADYGR LSSRLQAREG 101 150 ENSP00000299957/1-436 LGKRCEDDKV KLQNNISYQM ADIHHLKEQL AELRQEFLRQ EDQLQDYRKN ENSTTRP00000014421/1-435 XXXXXXXXXV KLQNNISYQM ADIHHLKEQL AELRQEFLRQ EDQLQDYRKN ENSBTAP00000048585/1-380 LGKRCEDDKV KLQNNISYQM ADIHHLKEQL AELRQEFLRQ EDQLQDYRKN bmy_12692T0/1-358 LGKRCEDD-- ---------- ---------- ---------- ---------- BACU020305/1-401 LGKRCEDDKV KLQNNISYQM ADIRHLKEQL AELRQEFLRQ EDQLQDYRKN 151 200 ENSP00000299957/1-436 NTYLVKRLEY ESFQCGQQMK ELRAQHEENI KKLADQFLEE QKQETQKIQS ENSTTRP00000014421/1-435 STYLVKRLEY ESFQCGQQIK ELRAQHEENI KKLADQFLQE QKQEAHKFES ENSBTAP00000048585/1-380 NTYLVKRLEY ESFQCGQQIK ELRAQHEENI KKLADQFLQE QKQEAHKFES bmy_12692T0/1-358 ---------- ---------- ---------- ---------- -KQEAHKFES BACU020305/1-401 NTYLVKRLEY ESFQCGQQIK ELRAQHEENI KKLADQFLQE QKQEAHKFES 201 250 ENSP00000299957/1-436 NDGKELDINN QVVPKNIPKV AENVADKNEE PSSNHIPHGK EQIKRGGDAG ENSTTRP00000014421/1-435 KDGNELDINH HAVPKNIPKV AENAADKHEE PSSNHIPHGK EQIKRGGDAG ENSBTAP00000048585/1-380 KGGNELDTDN HAVPKNIPEV AENGAGKNEE PSSHHIPHGK EQIKRGGDAG bmy_12692T0/1-358 KDGNELDINH HAVPKNIPKV AENAAGKHEE PSSNHIPHGK EQIKRGGDAG BACU020305/1-401 KDGNELDINH HAIPKNILKV AENAAGKHEE PSSNHIPHGK ---------- 251 300 ENSP00000299957/1-436 MPGIEENDLA KVDDLPPALR KPPISVSQHE SHQAISHLPT GQPLSPNMPP ENSTTRP00000014421/1-435 MPGIEENDLA KAEDLPIALK KPPVSFSQYE SHQVISHLPT GQPLSPNMVP ENSBTAP00000048585/1-380 MPGIEENDLA KAEDVPVALK KPPVSFSQYE SHQVISHLPT GQPLSPNMVP bmy_12692T0/1-358 MPGIEENDLA KAEDLPI--- ---------- ---------- ---------- BACU020305/1-401 ----EENDLA KAEDLPIALK KPPVSFSQYE SHQVISHLPT GQPLSPNMVP 301 350 ENSP00000299957/1-436 DSHINHNGNP GTSKQNPSSP LQRLIPGSNL DSEPRIQTDI LKQATKDRVS ENSTTRP00000014421/1-435 DSHVNHNGNP RTSKQKPSNP LQHLIPGPNL ESEPRIQADI LKQATKDRAG ENSBTAP00000048585/1-380 DSHINHNGNS RTSKQNPSNP LQRLIPGPNL ENEPRIQAEV LKQATKDRAG bmy_12692T0/1-358 DSHVNHNGNP RTSKQNPSNP LQHLIPGPNL ESEPRIQADI LKQATKDRAG BACU020305/1-401 DSHVNHNGNP RTSRQNPSNP LQHLIPGPNL ESEPRIQADI LKQATKDRAG 351 400 ENSP00000299957/1-436 DFHKLKQSRF FDENESPVDP QHGSKLADYN GDDGNVGEYE ADKQAELAYN ENSTTRP00000014421/1-435 DLHKLKQSRF FDENESPVDP QHGSKLADYN GDDGNVGEYE ADKQAELAYN ENSBTAP00000048585/1-380 DFHKLKQND- -EERELQMDP ------ADY- ---------- ---------- bmy_12692T0/1-358 DLHKLKQSRF FDENESPVDP QHGSKLADYN GDDGNVGEYE ADKQAELAYN BACU020305/1-401 DLHKLKQSRF FDENESPVDP QHGSKLADYN GDDGNVGEYE ADKQAELAYN 401 450 ENSP00000299957/1-436 EEEDGDGGEE DVQDDEEREL QMDPADYGKQ HFNDV----- ---------- ENSTTRP00000014421/1-435 EEEDGDGGEE DVQDDEEQEL QMDPADYGKQ HFNDA----- ---------- ENSBTAP00000048585/1-380 -------GKQ RFNDA----- ---------- ---------- ---------- bmy_12692T0/1-358 EEEDGDGGEE DVQEAGSYEM TNQHVKQNGK LEDNPSSGSP PRTTLLGTIF BACU020305/1-401 EEEDGDGGEE DVQGE----- ---------- ---------- ---------- 451 500 ENSP00000299957/1-436 ---------- ---------- ---L ENSTTRP00000014421/1-435 ---------- ---------- ---L ENSBTAP00000048585/1-380 ---------- ---------- ---L bmy_12692T0/1-358 SPVFNFFSPA NKNGKYKSLT IIWV BACU020305/1-401 ---------- ---------- ----