KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:21 2014 Check: 00 .. Name: ENSTTRP00000002861/1-279 Len: 281 Check: 3340 Weight: 1.00 Name: bmy_06059T0/1-219 Len: 281 Check: 9921 Weight: 1.00 Name: ENSP00000366410/1-279 Len: 281 Check: 7436 Weight: 1.00 Name: BACU002994/1-281 Len: 281 Check: 4152 Weight: 1.00 Name: ENSBTAP00000048652/1-281 Len: 281 Check: 5507 Weight: 1.00 // 1 50 ENSTTRP00000002861/1-279 MENSEKTEVV LLACGSFNPI TNMHLRLFEL ARDYMNGTXX XXXXXXXXXX bmy_06059T0/1-219 ---------- ---------- ---MLPTFNI ASEALRHLQR DDI------S ENSP00000366410/1-279 MENSEKTEVV LLACGSFNPI TNMHLRLFEL AKDYMNGTGR YTVVKGIISP BACU002994/1-281 MENSEKTEVV LLACGSFNPI TNMHLRLFEL AKDYMNGTGK YEVIKGIISP ENSBTAP00000048652/1-281 MENSEKTEVV LLACGSFNPI TNMHLRLFEL AKDYMNGTGK YKVIKGIISP 51 100 ENSTTRP00000002861/1-279 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06059T0/1-219 VEHCEKEKCS IA-------- ---------- ---------- -----LLLYR ENSP00000366410/1-279 VGDAYKKKGL IPAYHRVIMA ELATKNSKWV EVDTWESLQK EWKETLKVLR BACU002994/1-281 VGDAYKKKGL ISAHHRVIMA ELATKNSKWL EVDTWESLQQ DWIETATVLR ENSBTAP00000048652/1-281 VGDAYKKKGL ISAYHRVIMA ELATKNSKWV EVDTWESLQK EWTETAKVLR 101 150 ENSTTRP00000002861/1-279 XXXXXXXXXX XXXXXXXXXX XXXXXX--XX XXXXXXXXXX XXXXXXXXXV bmy_06059T0/1-219 HHQEKLEASS CDHQQDSPVL ERPGRKRKWA EQRQDFSQKK SLEQTKTKGV ENSP00000366410/1-279 HHQEKLEASD CDHQQNSPTL ERPGRKRKWT ET-QDSSQKK SLEP-KTKAV BACU002994/1-281 HHQEKLEASS CDHQQNSPVL ERPGRKRKWA EQRQDFSQKK SLEQTKTKGV ENSBTAP00000048652/1-281 HHQEKLEASI CDPQQNSPVL EKPGRKRKWA EQKQDISEKK SLEQTKTKGV 151 200 ENSTTRP00000002861/1-279 PKVKLLCGAD LLESFGVPNL WKGEDITKIV GDYGLICITR AGNDAQKFIY bmy_06059T0/1-219 PKVKLLCGAD FLESFGVPNL WKREDITKIV GDYGLICITR AGNDAQKFIY ENSP00000366410/1-279 PKVKLLCGAD LLESFAVPNL WKSEDITQIV ANYGLICVTR AGNDAQKFIY BACU002994/1-281 PKVKLLCGAD FLESFGVPNL WKGEDITKIV GDYGLICVTR AGNDAQKFIY ENSBTAP00000048652/1-281 PKVKLLCGAD FLESFGVPNL WKSEDITKIL GDYGLICITR AGNDAQKFIY 201 250 ENSTTRP00000002861/1-279 ESDVLWKHQN NIHLVNEWIT NDISSTKIRR ALRRGQSIRY LVPDLVQEYI bmy_06059T0/1-219 ESDVLWKHQN NIHLVNEWIT NDISSTKIRR ALRRGQSIRY LVPDLVQEYI ENSP00000366410/1-279 ESDVLWKHRS NIHVVNEWIA NDISSTKIRR ALRRGQSIRY LVPDLVQEYI BACU002994/1-281 ESDVLWKHQN NIHLVNEWIT NDISSTKIRR ALRRGQSIRY LVPDLVQEYI ENSBTAP00000048652/1-281 ESDVLWKHQN NIHLVNEWIT NDISSTKIRR ALRRGQSIRY LVPDLVEEYI 251 300 ENSTTRP00000002861/1-279 EKHSLYSSES EERNVGVILA PLLRNTAEAD T bmy_06059T0/1-219 AKHSLYTSES EERNVGVILA PLQRKTAEAD T ENSP00000366410/1-279 EKHNLYSSES EDRNAGVILA PLQRNTAEAK T BACU002994/1-281 EKHSLYSSES EERNVGVILA PLQRKTAEAD T ENSBTAP00000048652/1-281 EKHNLYSSES EERNVGVVLA PLQRNTTEVK A