KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:22 2014 Check: 00 .. Name: ENSBTAP00000048693/1-291 Len: 319 Check: 696 Weight: 1.00 Name: bmy_08601T0/1-158 Len: 319 Check: 2250 Weight: 1.00 Name: BACU016237/1-291 Len: 319 Check: 9731 Weight: 1.00 Name: ENSP00000309515/1-297 Len: 319 Check: 7965 Weight: 1.00 Name: ENSTTRP00000011019/1-296 Len: 319 Check: 3495 Weight: 1.00 // 1 50 ENSBTAP00000048693/1-291 MACLIPSQLQ KFQEDGFLVL EGFLSADECE AMQRRIDEIV AKMDVPLHCR bmy_08601T0/1-158 ---------- ---------- ---------- ---------- ---------- BACU016237/1-291 MAYLRPSQLQ KFQEDGFLVL EGFWSADECA AMQRRIGEIV AEMDVPLHCR ENSP00000309515/1-297 MACLSPSQLQ KFQQDGFLVL EGFLSAEECV AMQQRIGEIV AEMDVPLHCR ENSTTRP00000011019/1-296 MAYLSPSQLQ KFQEDGFLVL EGFWSADECV AMQRRIGEIV GEMDVPLHCR 51 100 ENSBTAP00000048693/1-291 TEFSTQEEEQ LRAQGSTDYF LSSGDKIRFF FEKGVFDKQG NFLVPPEKSI bmy_08601T0/1-158 ---------- ---------- ---------- ---------- ---------- BACU016237/1-291 TEFSTQEEEQ LRAQGSTDYF LSSGDKIRFF FEKGVFDEKG NFLVPPEKSI ENSP00000309515/1-297 TEFSTQEEEQ LRAQGSTDYF LSSGDKIRFF FEKGVFDEKG NFLVPPEKSI ENSTTRP00000011019/1-296 TEFSTQEEEQ LRAQGSTDYF LSSGDKIRFF FEKGVFDEKG NFLVPPEKSI 101 150 ENSBTAP00000048693/1-291 NKIGHALHAL DPIFRCVTHS HKVQALARSL GLQMPVVVQS MYIFKQPHFG bmy_08601T0/1-158 ---------- ---------- ---------- ---MPVVVQS MYIFKQPHLG BACU016237/1-291 NKIGHALHAH DSVFRCVTHS PKVQALARSL GLQMPVVVQS MYIFKQPHLG ENSP00000309515/1-297 NKIGHALHAH DPVFKSITHS FKVQTLARSL GLQMPVVVQS MYIFKSPLIR ENSTTRP00000011019/1-296 NKIGHALHAH DPVF-CVTHS PKVQALARSL GLRMPVVVQS MYIFKSPLTR 151 200 ENSBTAP00000048693/1-291 GEVAPHQDAS FLYTEPLGRV LGLWIALEDA MLENGCLWFI PGSHTGGVSR bmy_08601T0/1-158 GEVSPHQDAS FLYTEPLGRV LGVWIALEDA TLENGCLWFI PGSHTGGVSR BACU016237/1-291 GEVSPHQDAS FLYTEPLGRV LGVWIALEDA TLENGCLWFI PGSHTGGVSR ENSP00000309515/1-297 ---TPPSCTR SPWA------ -GCWAC---- ----GSQWRM PRWRTAVSGS ENSTTRP00000011019/1-296 ---TPPSCIR SLWA------ -GCWAC---- ----GLLWKM PRWRMAASGS 201 250 ENSBTAP00000048693/1-291 RMVRTPAGSV PG-TSFLGSE PIRDNSLFVP TPVLRGALVL IH---GEVVH bmy_08601T0/1-158 RMVRAPAGSA PG-TSFLGTE PARDNSLFVP TPVRRGALIL IH---GEVVH BACU016237/1-291 RMVRAPAGSA PG-TSFLGTE PARDNSLFVP TPVRRGALIL IH---GEVVH ENSP00000309515/1-297 SLAPTPVVCQ EGWSGPLLAQ RLVPASLGQS QPGITASLCP PQCREGPWSS ENSTTRP00000011019/1-296 SLAPTQVECR EGWSGPLLAR RLAPASLGPS QPGITASLCP HRCGEGP-SS 251 300 ENSBTAP00000048693/1-291 KSEQNLSDRS RQAYTFHLME AAGTIWSPDN WLQPTP---- ------ELPF bmy_08601T0/1-158 KSEQNFSDYS RQAYTFHLME AAGTVWSPDN WLQPTA---- ------ELPF BACU016237/1-291 KSEQNFSNCS RQAYTFHLME AAGTVWSPDN WLQPTA---- ------ELPF ENSP00000309515/1-297 SMEKWYTRAS RTSLTARARP TLSTSWRP-- -LAPPGARRT GSSQQLNCPF ENSTTRP00000011019/1-296 STEKWCTKVS RISPTAHARP ILSTSWRL-- -LARSGAQTT GSSRQLSCPF 301 350 ENSBTAP00000048693/1-291 P--------- -----PLYT bmy_08601T0/1-158 T--------- -----PLYT BACU016237/1-291 P--------- -----PLYT ENSP00000309515/1-297 PNCTPKGSRR AGALAPPG- ENSTTRP00000011019/1-296 PHCTPKGPLR AGTPPPLGR