KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:25 2014 Check: 00 .. Name: ENSP00000175238/1-754 Len: 1024 Check: 7844 Weight: 1.00 Name: ENSBTAP00000048800/1-559 Len: 1024 Check: 2216 Weight: 1.00 Name: ENSTTRP00000006646/1-627 Len: 1024 Check: 1952 Weight: 1.00 Name: bmy_00911T0/1-620 Len: 1024 Check: 7191 Weight: 1.00 Name: BACU015303/1-851 Len: 1024 Check: 5534 Weight: 1.00 // 1 50 ENSP00000175238/1-754 MLPGCIFLMI LLIPQV---K EKFILGVEGQ QLVRPKKLPL IQKRDT--GH ENSBTAP00000048800/1-559 ---------- --LPRT---- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 MFPGSLFVKI LLISQI---K EKVILGVEGQ ELVYPKRLPL IQERDI--WH BACU015303/1-851 -MSLVLLSTL WLIVQAQAIA IKPTPELEPY EVVRPKKLHI LHKREMQNNQ 51 100 ENSP00000175238/1-754 THDDDILKTY EEELLYEIKL NRKTLVLHLL RSREFLGSNY SETFYSMKGE ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 TREDD----- ---------- ---------- ---------- ---------- BACU015303/1-851 TEKHGKEERY EPELQYQMIL NGEEVILCLQ KAKHLLGPDY TETYYSPRGE 101 150 ENSP00000175238/1-754 AFTRHPQIMD HCFYQGSIVH EYDSAASIST CNGL------ ---------- ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 -------IQD HCFYQGSIIH EFDSAASIST CNGL------ ---------- BACU015303/1-851 KITTSPQNME HCYYKGHVLN EKDSVASICT CDGLRGYFTH HNQRYMIKPL 151 200 ENSP00000175238/1-754 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU015303/1-851 KITDQEEHAV LIYNQEELDP ANHTCGVRNV GRKQGLIRTS RSLKRPEIYN 201 250 ENSP00000175238/1-754 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU015303/1-851 TIDIQVVLIG MEIWSDGDKI KVVPNTGVTF NNFLNWHRSN LGKMKIHDHA 251 300 ENSP00000175238/1-754 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU015303/1-851 QLLRGTRKKK KETRSEEIRG LKIVLADCFC SGRVTYVRDF KHLGFIPRLA 301 350 ENSP00000175238/1-754 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000048800/1-559 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ---------- ---------- ---------- ---------- bmy_00911T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU015303/1-851 GPREKVILGV EGQELVYPKR LPLIQKQDIW HTHEDDIQEA YEEELLYELS 351 400 ENSP00000175238/1-754 ---------- ---RGFFRIN DQRYLIEPVK YSDEGEHLVF KYNLRVPYGA ENSBTAP00000048800/1-559 ---------- ---------- ---YQVE--- ---------- ---------- ENSTTRP00000006646/1-627 ---------- ----GFFRVS DRRYLIEPVK YSDEGEHVVF KYKPQMQQPA bmy_00911T0/1-620 ---------- ---RGFFRVS DQRYLIEPVK YSDEGEHLVF KYTPQMQQPA BACU015303/1-851 LNRKILIIHL LKSRGFFRVS DQRYHIEPVK YSDEGEHLVF KYKPQMQQPA 401 450 ENSP00000175238/1-754 NYSCTELNFT RKTVPGDN-E SEEDSKIKGI HDEKYVELFI VADDTVYRRN ENSBTAP00000048800/1-559 ---------- RSGVDHS--- ---------- ----FLSFSI ISLAP-YRRN ENSTTRP00000006646/1-627 NYSCTELNFT RTAVPNDNTK SMEDSKMEXX XXXXXXXXXX XXXXX-XXXX bmy_00911T0/1-620 NYSCTELNFT RTAVPNDNTK SMEDSKMESM EKEKYIELFI VADDNMYRRN BACU015303/1-851 NYSCTELNFT RTAVPNDNTK SMEDSKMESM EKEKYIELFI VADD------ 451 500 ENSP00000175238/1-754 GHPHNKLRNR IWGMVNFVNM IYKTLNIHVT LVGIEIWTHE DKIELYSNIE ENSBTAP00000048800/1-559 SQPHSRLRNR VWGMVNFVNM IYKTLNIHVT LVGLEIWTNG DKIEVDSNIE ENSTTRP00000006646/1-627 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00911T0/1-620 NHP-NKLRNR VWGMVNFVNM IYKTLDIQVT LVGFEIWTNG DKIDIDSKIE BACU015303/1-851 ---------- --------NM IYKTLDIQVT LVGFEIWTNG DKIDIDSKIE 501 550 ENSP00000175238/1-754 TTLLRFSFWQ EKILKTRKDF DHVVLLSGKW LYSHVQGISY PGGMCLPYYS ENSBTAP00000048800/1-559 TTLLRFSAWQ EIILKKRKNF DHSMLLSGKW LYTQAHGTSY PGGMCLPYYS ENSTTRP00000006646/1-627 XXXXXXXXXX XXXXXXXXXX XXXXXXXXGK WLAHAQGTSY SGGICLPYYS bmy_00911T0/1-620 TTLLRFSAWQ EIILKKRKNF DHV------- ---------- ---------- BACU015303/1-851 TTLLRFSAWQ EIILKKRKNF DHV------- ---------- ---------- 551 600 ENSP00000175238/1-754 TSIIKDLLPD TNIIANRMAH QLGHNLGMQH DEFPCTCPSG KCVMDSDGSI ENSBTAP00000048800/1-559 SSVVKDLLPD LNAIASRMAH QLGHNLGMSH DDYPCTCDLE KCVMNSGGSI ENSTTRP00000006646/1-627 SSVVKD-LPD LNAIASRMAH QLGHDLGMRH DDYPCTCTLG KCVMDSDGSI bmy_00911T0/1-620 ---------- ---------- ---------- ------MLL- --------SI BACU015303/1-851 ---------- ---------- ---------- ------MLL- --------ST 601 650 ENSP00000175238/1-754 PALKFSKCSQ NQYHQYLKDY KPTCMLNIPF PYNFHDFQFC GNKKLDEGEE ENSBTAP00000048800/1-559 PALKFSKCSK TQYQQFLKDY SLTCMFNVPF SDNFSDYPYC GNNRLDDGEE ENSTTRP00000006646/1-627 PALKFSKCSK TQYQQYLKDY KPTCMFNIPF SDKLSDYPYC GNKRLDDGEE bmy_00911T0/1-620 PALKFSKCSE TQYQQYLKDY KPTCMYNIPF SDKLSDYPYC GNKRLDDGEE BACU015303/1-851 PALKFSKCSK TQYQQYLKDY KPTCMFNIPF SDKLSDYPYC GNKRLDDGEE 651 700 ENSP00000175238/1-754 CDCGPAQECT NPCCDAHTCV LKPGFTCAEG ECCESCQIKK AGSICRPAKD ENSBTAP00000048800/1-559 CDCGLLQDCT NPCCDAHKCM LKPGFTCAEG ECCESCQMKK AGSICRPART ENSTTRP00000006646/1-627 CDCGPVQECT NPCCEAHKCM LKPGFSCAEG ECCESRQLKK AASICRPAKD bmy_00911T0/1-620 CDCGPVQECT NPCCDAHKCM LKPGFSCAEG ECCESCQLKK AASICRPAKD BACU015303/1-851 CDCGPV---- ---------- ---------- ------QLKN AASICRPAKD 701 750 ENSP00000175238/1-754 ECDFPEMCTG HSPACPKDQF RVNGFPCKNS EGYCFMGKCP TREDQCSELF ENSBTAP00000048800/1-559 ECDFPERCTG HSSGCPKDQF QVNGFPCKNA KGYCFMGNCP TRDDQCSELF ENSTTRP00000006646/1-627 ECDFPEMCTG HSSGCPKDQF QINGFPCKNA KGYCFMGNCP TRDDQCSEVF bmy_00911T0/1-620 ECDFPEMCTG HSSRCPKDQF QINGFPCKNA KGYCFMGNCP TXDDQCSELF BACU015303/1-851 ECDFPEMCTG HSSGCPKDQF QINGFPCKNA KGYCFVGNCP TRDDQCSELF 751 800 ENSP00000175238/1-754 DDEAIESHDI CYKMNTKGNK FGYCKNKENR FLPCEEKDVR CGKIYCTGGE ENSBTAP00000048800/1-559 DHEAKASSDI CYKMNTIGNK FGYCKNKGRI LIPCEEKDIK CGKIFCTGGH ENSTTRP00000006646/1-627 DKEAKDSSDI CYKMNKIGNK FGYCKHTKHV LIPCEEKGIK CGKIFCTGGQ bmy_00911T0/1-620 DKEAKDSSDI CYKMNKIGNK FGYCKNKKHV LMPCEEKDIR CGKIFCTGGQ BACU015303/1-851 DKEAKDSSDI CYKMNKIGNK FGYCKSKKHI LIPCEEKDIR CGKIFCTGGQ 801 850 ENSP00000175238/1-754 LSSLLGEDKT YHLKDPQKNA TVKCKTIFLY HDSTDIGLVA SGTKCGEGMV ENSBTAP00000048800/1-559 HSSVLGEEKI YHLKKHLKQN TSECKTFYLY HDSKDFGLVA PGTKCGDGMV ENSTTRP00000006646/1-627 HSSVLGEEKI YHLKKALKQN ATECKTFFLY HDSKDFGLVA PGTKCGDGLV bmy_00911T0/1-620 HSSVLGEEKI YHLKKSLKQN ATECKTLFLY HDSKDFGLVA PGTKCGEGLV BACU015303/1-851 HSSVLGEEKI YHLKKPLKQN ATECKTFFLY HDSKDFGLVA PGTKCGDGLV 851 900 ENSP00000175238/1-754 CNNGECLNME KVYISTNCPS QCNENP---- ---------- ---------- ENSBTAP00000048800/1-559 CSNGECVTIE KAYNSTDCSA QCNENS---- ---------- ---------- ENSTTRP00000006646/1-627 CSNGECVTTA QAYNSTNCSS QCNENS---- ---------- ---------- bmy_00911T0/1-620 CSNGECVTTA KAYNSTDCSS QCNENSVRAG TKLNELQNTT YVSHLMIYDL BACU015303/1-851 CSNGECVTTA KAYNSTNCSS QCNENS---- ---------- ---------- 901 950 ENSP00000175238/1-754 ----VDGHGL QCHCEEGQAP VACEETLHVT NITILVVVLV LVIVGIGVLI ENSBTAP00000048800/1-559 ----VDDGEL ECQCEGIQAS TEWEETLNVT NLCILVVVLF LVIFGVVVVI ENSTTRP00000006646/1-627 ----VDDGEL ECQCEAVQAS AEWEETLNVT NISILVVGLI LVIIGVVVVI bmy_00911T0/1-620 WLFQVDDGEL ECQCEAVQAS AEWEETLNVT NISILVVVLI LVIIGVVVVT BACU015303/1-851 ----VDDGEL ECQCEAVQAS VEWEETLNVT NISILVVVLI LVIIGVVVVI 951 1000 ENSP00000175238/1-754 LLVRYRKCIK LKQVQSPPTE TLGVENKGYF GDEQQIRTEP ILPEIHFLNK ENSBTAP00000048800/1-559 LLIRYKKCIR LKQVQSPPRE TLGVENKAYF GDEQQTRNEP ILPDIHPLHR ENSTTRP00000006646/1-627 VLIRYKKCIK LKQVQSPPRE TLGVENKGYF GDEQQTRTES ILPGIHPLHP bmy_00911T0/1-620 VLIRYKKCIK LKQVQRDAKE -IGAEN---- ---------- ---------- BACU015303/1-851 VLIRYKKCIK LKQVQSPPRE TLGVENKGYF GDEQQTRTEP ILPDIHPLHV 1001 1050 ENSP00000175238/1-754 PASKDSRG-- --IADPNQSA K--- ENSBTAP00000048800/1-559 ---------- -------LIF RGES ENSTTRP00000006646/1-627 RTAESSERST SFLSPHCITL R--- bmy_00911T0/1-620 ---------- -------IRF H--- BACU015303/1-851 RK-------- -------YHL H---