KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:26 2014 Check: 00 .. Name: bmy_15110T0/1-301 Len: 552 Check: 3219 Weight: 1.00 Name: BACU002660/1-309 Len: 552 Check: 2349 Weight: 1.00 Name: ENSP00000396857/1-545 Len: 552 Check: 7642 Weight: 1.00 Name: ENSBTAP00000048822/1-550 Len: 552 Check: 501 Weight: 1.00 Name: ENSTTRP00000009109/1-136 Len: 552 Check: 3224 Weight: 1.00 // 1 50 bmy_15110T0/1-301 MEREDKRGVC EAQDSEDKGM GSDFENSEDR EGDPEHRGMG SNPHDADKRE BACU002660/1-309 MEREDKRGVC EAQDSEDKGM GSDFENSEDR EGDPEDRGMG SNPHDADKRE ENSP00000396857/1-545 MKQEDNQGVC AHQDSEDKGM GSDFEDSEDR EGDPEEREMG SNPHDTNKRE ENSBTAP00000048822/1-550 MEQDDKQGVC EAQDSQDKGM GSDFENCEDR EGDPDERGMG SNPQDADKRE ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15110T0/1-301 CHLEQEMGSN PQDEALRGDS EEMELVSNIC TGGLLSEEEG VALREEEDDQ BACU002660/1-309 CHL-QEMGSN PQDEALRGDS EERELVSNIC TGGLLSEEEG VALREEEDDQ ENSP00000396857/1-545 GHPEPEMGSN PQD------S RHREAVPDIC TEGQLSEEEG VSVRGEEDDQ ENSBTAP00000048822/1-550 GHLGQEMGSD PQDEAPRGHS EERELMSNIC TEGLLSEEDG VASREEEDDQ ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_15110T0/1-301 AGVAEMAMFA GLSESVGISR SPQE------ ------EEEE EQPPPAVLPW BACU002660/1-309 AGVAEMAIGA G--------- ---------- ---------- ---------- ENSP00000396857/1-545 SGVADMAMFP GLSESDSISR SLRE-DDDES AGENRLEEEE EQPAPPVLPW ENSBTAP00000048822/1-550 SGVVEMAMFP GLSESDSISR SPQEEEEEES AGENRLEEEE EQPPPAVLPW ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_15110T0/1-301 RRHLSLGSRH RGDKPAHRRF RRLHHPMAMH LGELDSLMAS IMDAPTICPD BACU002660/1-309 ---------- ---------- ---------- ---------S AALRPFACGE ENSP00000396857/1-545 RRHLSLGSRH RGDKPAHRRF HRLHHPMAVD LGELDSLVAS IMDAPTICPD ENSBTAP00000048822/1-550 RRHLSLGSRH RGDKPAHRRF RRLHHPMSMD LGELDSLMAS IMDAPTICPD ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ------MCSE 201 250 bmy_15110T0/1-301 CGESFSPGAA FLQHQRIHRL AEAAAAASLE PFGFAGECGG VVGMMGVG-- BACU002660/1-309 CGKGFVRRSH LANHQRIH-- ------TGEK PHG-CGECG- ---------- ENSP00000396857/1-545 CGESFSPGAA FLQHQRIHRL AEAAAAASLE PFGLAGECDA MVGMMGVGVA ENSBTAP00000048822/1-550 CGESFSPGAA FLQHQRIHRL AEAAAAASLE PFGFAGECEA VVGMMGVG-- ENSTTRP00000009109/1-136 CGETFSVSSH LFTHKRTH-- ---------- ---------- ---------- 251 300 bmy_15110T0/1-301 ---------- ---------- ---------- ---------- ---------- BACU002660/1-309 ---------- ---------- ---------- ---------- ---------- ENSP00000396857/1-545 GGFGAGPPLA RPPREKPFRC GECGKGFSRN TYLTNHLRLH TGERPNLCAD ENSBTAP00000048822/1-550 GGFGAGPALA RPPREKPFRC GECGKGFSRN TYLTNHLRLH TGERPNLCAD ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_15110T0/1-301 ---------- ---------- ---------- ---------- ---------- BACU002660/1-309 ---------- ---------- ---------- ---------- ---------- ENSP00000396857/1-545 CGKSFSWRAD LLKHRRLHTG EKPYPCPECG EAFSLSSHLL SHRRAHAAAS ENSBTAP00000048822/1-550 CGKSFSWRAD LLKHRRLHTG EKPYPCPECG EAFSLSSHLL SHRRAHAAAS ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_15110T0/1-301 ---------- ---------- ---------- ---------- ---------- BACU002660/1-309 ---------- ---------- ---------- ---------- ----KRFSWR ENSP00000396857/1-545 GAGAAALRPF ACGECGKGFV RRSHLANHQR IHTGEKPHGC GECGKRFSWR ENSBTAP00000048822/1-550 GAGPAALRPF ACGECGKGFV RRSHLANHQR IHTGEKPHGC SECGKRFSWR ENSTTRP00000009109/1-136 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_15110T0/1-301 ---------- ---------- ---------- ---------- ----VGVGVA BACU002660/1-309 SDLVKHQRVH TGEKPYMCSE CGETFSFSSH LFTHKRTHSG ERPYVCRECG ENSP00000396857/1-545 SDLVKHQRVH TGEKPYMCSE CGETFSVSSH LFTHKRTHSG ERPYVCRECG ENSBTAP00000048822/1-550 SDLVKHQRVH TGEKPYMCSE CGETFSVSSH LFTHKRTHSG ERPYVCRECG ENSTTRP00000009109/1-136 ---------- ---------- ---------- --------SG ERPYVCRECG 451 500 bmy_15110T0/1-301 GGFGAGPALA RPPR----EK PFRCGECDKK ASHYFTIPSV TTSLSRRK-- BACU002660/1-309 KGFGRNSHLV NHLRVHTGEK PFRCGQCEKR FSDFSTLTQH QRTHTGEKPY ENSP00000396857/1-545 KGFGRNSHLV NHLRVHTGEK PFRCGQCEKR FSDFSTLTQH QRTHTGEKPY ENSBTAP00000048822/1-550 KGFGRNSHLV NHLRVHTGEK PFRCGQCEKR FSDFSTLTQH QRTHTGEKPY ENSTTRP00000009109/1-136 KGFGRNSHLV NHLRVHTGEK PFRCGQCEKR FSDFSTLTQH QRTHTGEKPY 501 550 bmy_15110T0/1-301 ---------- QSSHQT---- ------PHSH GAAKM----- ---------- BACU002660/1-309 TCIECGKSFI QSSHLIRHRR IHTGNKPHKC AGCGKGFRYK THLAQHQKLH ENSP00000396857/1-545 TCIECGKSFI QSSHLIRHRR IHTGNKPHKC AGCGKGFRYK THLAQHQKLH ENSBTAP00000048822/1-550 TCIECGKSFI QSSHLIRHRR IHTGNKPHKC AGCGKGFRYK THLAQHQKLH ENSTTRP00000009109/1-136 TCIECGKSFI QSSHLIRHRR IHTGNKPHKC AGCGKGFRYK THLAQHQKLH 551 600 bmy_15110T0/1-301 -- BACU002660/1-309 LC ENSP00000396857/1-545 LC ENSBTAP00000048822/1-550 LC ENSTTRP00000009109/1-136 LC