KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:26 2014 Check: 00 .. Name: bmy_21134T0/1-188 Len: 335 Check: 1731 Weight: 1.00 Name: ENSTTRP00000012458/1-332 Len: 335 Check: 7199 Weight: 1.00 Name: ENSP00000387261/1-334 Len: 335 Check: 7269 Weight: 1.00 Name: ENSBTAP00000048842/1-334 Len: 335 Check: 9749 Weight: 1.00 Name: BACU017640/1-237 Len: 335 Check: 4845 Weight: 1.00 // 1 50 bmy_21134T0/1-188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012458/1-332 --RVKLCDRC ESSDILSSIG YETIIQHLNT GRKNCKEFED FLKEXXXXXX ENSP00000387261/1-334 MTRSLFKGNF WSADILSTIG YDNIIQHLNN GRKNCKEFED FLKERAAIEE ENSBTAP00000048842/1-334 MTGSLFKGNF WTSDILSTIG YDSIVQHLNN GRKNCKEFED FLKERASIEE BACU017640/1-237 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_21134T0/1-188 ---------- ---------- ---------- ---------- ------MLRN ENSTTRP00000012458/1-332 XXXXXXXXXX XXXXXXXXXX XTLKRALDVF KLQIDSVAQS HIQLAQTLRE ENSP00000387261/1-334 RYGKDLLNLS RKKPCGQSEI NTLKRALEVF KQQVDNVAQC HIQLAQSLRE ENSBTAP00000048842/1-334 KYGKDLLSLA RKKPCGQSET NTLKRALEVF KQQVDNVAQS HIYLAQTLRE BACU017640/1-237 ---------- ---------- ITLKRALDVF KLQVDNVAQS HIQLAQTLRE 101 150 bmy_21134T0/1-188 VGKH------ ---------- ---------- ---------A KKNYEQKCRD ENSTTRP00000012458/1-332 EARKMEEFRE KQKLQRKKTE LIMDAAHKQK SLQFKKTMDA KKNYEQKCRD ENSP00000387261/1-334 EARKMEEFRE KQKLQRKKTE LIMDAIHKQK SLQFKKTMDA KKNYEQKCRD ENSBTAP00000048842/1-334 EARKMEEFRE KQKSQQKKTE LIMDAAHKQK SLQFKKTMDA KKNYEQKCRD BACU017640/1-237 EARKMEEFRE KQKLQRKKTE LIMDAAHKQK GLQFKKTMDA KKNYEQKCRD 151 200 bmy_21134T0/1-188 KDEAEQAVHR SANVVNPKQQ EKLFVKLATS KTAVEDSDKA YMLHINTLDK ENSTTRP00000012458/1-332 KDEAEQAVHR SANVANPKQQ EKXXXXXXXX XXXXXXXXKA YMLHINTLDK ENSP00000387261/1-334 KDEAEQAVSR SANLVNPKQQ EKLFVKLATS KTAVEDSDKA YMLHIGTLDK ENSBTAP00000048842/1-334 KDEAEQAVHR SANMANPKQQ EKLFVKLATS KTAVEDSDKL YMLQINTLDR BACU017640/1-237 KDEAEQAVHR SANVVNPKQQ EKLFVKLATS KTAVEDSDKA YMLHINTLDK 201 250 bmy_21134T0/1-188 VREEWQSEHI KACEVFETQE CERINFFRNA LWLHMNQLSQ QC-----MYE ENSTTRP00000012458/1-332 VREEWQSEHI KACEVFETQE CERINFFRNA LWLHMNQLSQ QCVTSDNMYE ENSP00000387261/1-334 VREEWQSEHI KACEAFEAQE CERINFFRNA LWLHVNQLSQ QCVTSDEMYE ENSBTAP00000048842/1-334 VRNEWQSEHI KACEVFEAQE CERINFFRNA LWLHMNQLSQ QCVTSDEMYE BACU017640/1-237 VREEWQSEHI KACEVFETQE CERINFFRNA LWLHMNQLSQ QCVTSDNMYE 251 300 bmy_21134T0/1-188 EVRKSLEMCS IEKDIEYFVN QRKTGQAPPG EDLSQFLKVY QKTKL---FM ENSTTRP00000012458/1-332 EVRKSLEMCS IEKDIEYFVN QRKTGQTPPA PIMYENFYCP QKNAAPPGKA ENSP00000387261/1-334 QVRKSLEMCS IQRDIEYFVN QRKTGQIPPA PIMYENFYSS QKNAVPAGKA ENSBTAP00000048842/1-334 KVRKSLEMCS IEKDIEYFVN QRGTGQTPPA PIMYENFYCP QKNAA-PGKA BACU017640/1-237 EVRKSLEMCS IEKDIEYFVN QRKTGQAPPA PIVYENFYCP QKNAAPPGKP 301 350 bmy_21134T0/1-188 VGASVAWKEA LKAAESVEIT SIMKTLK--- ----- ENSTTRP00000012458/1-332 TGSDLARRRP LPIPKSLPDD PDYSLPD-NY SLIYQ ENSP00000387261/1-334 TGPNLARRGP LPIPKSSPDD PNYSLVD-DY SLLYQ ENSBTAP00000048842/1-334 TGPNSARRGP LPNPKSLPDD PDYSLLDNNY SLVYQ BACU017640/1-237 TGPNLAR--- ---------- ---------- -----