KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:27 2014 Check: 00 .. Name: ENSP00000330051/1-586 Len: 597 Check: 9114 Weight: 1.00 Name: ENSBTAP00000048878/1-301 Len: 597 Check: 1503 Weight: 1.00 Name: bmy_01697T0/1-590 Len: 597 Check: 2394 Weight: 1.00 Name: BACU001209/1-595 Len: 597 Check: 8810 Weight: 1.00 // 1 50 ENSP00000330051/1-586 MSANPRWDIS RALGVAKLFH LVCGVREACV TPFLTLYLRQ LGLAAPWVGT ENSBTAP00000048878/1-301 MSANPQWDIS RALRVAKLFH LVCGVRDACV TPFLTLYLRQ LGLAAPWVGI bmy_01697T0/1-590 MSANPQWDIS RALGVARFFH LVCGVRDACV TPFLTLYLRQ LGLAAPWVGI BACU001209/1-595 MSANPQWDIS RALGVARFFH LVCGVRDACV TPFLTLYLRQ LGLAAPWVGI 51 100 ENSP00000330051/1-586 LMGTKHLIAA FWAPVCAFLA KSYRKRRALL IGSLLGSVGA SLLMVLVPPV ENSBTAP00000048878/1-301 LMGTKHLIAA SWAPFCAFLA RSHQKRRVLM TASLLGSAGA SLFMVLVPPL bmy_01697T0/1-590 LMGTKHLIAA FWAPFCAFLA KSYQKRRVLL IGSLLGSVGA SLLMVLVPPL BACU001209/1-595 LMGTKHLISA FWAPFCAFLA KSYQKRRVLL IGSLLGSVGA SLLMVLVPPL 101 150 ENSP00000330051/1-586 DKNRVHFPCN GSSGLTSTDA LPGVTLPVNI TSAQESAS-- -----SHPAK ENSBTAP00000048878/1-301 DRDPGDRRCN GSHSLTAEGP PPGVELTVTV TLASEPASNS PAGALSLPGE bmy_01697T0/1-590 DRDPGYRSCN GSHSVTATVP PPGVALTVNV TSAPEPAP-- -----SLPAE BACU001209/1-595 DRDPGYRSCD GSHSVTATVP PPGVALTVNV TSSPEPAPNH PAP--SLPAE 151 200 ENSP00000330051/1-586 RTAEVE-MPG FRNPPGESDR ETFRDLHVYL APSVEGARTT SQALLHPVTS ENSBTAP00000048878/1-301 RSSGVAGTLG FREGPGESAQ EPFSYPPGSS VGSTQGTRNR SGVLLH---- bmy_01697T0/1-590 RSTGVAPADG FRGGPGESGQ EPFSHLPSSF VGSIQGTRTT SRVLLHPITS BACU001209/1-595 RSTGVAPADG FRGGPGESGQ EPFSRLPSSF VGSIQGTRTT SRVLLHPITS 201 250 ENSP00000330051/1-586 GLKDHPWEVT FEVVKTALPL LPGGKGPGNP ANLSGTKGKA WAFDLSLEAL ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- ---------- bmy_01697T0/1-590 RVKDTPQEGA FRVVSPALPL LAGGTALASP ANQSAAKGMA GALDLSLEGL BACU001209/1-595 RVKDTPQEGA FRVVSPALPL LAGGMALASP ANQSAAKGTA GALDLSLEGL 251 300 ENSP00000330051/1-586 RRTFILSLGS VAFWELLTAP LEQVADDSLY EFLDFVDATD RYRSLWVWRL ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- ---------- bmy_01697T0/1-590 RWTFILSLGS MVFWELLSSP LEQVADDSLY EYLDFVDATD RYRSLWIWRL BACU001209/1-595 RWTFILSLGS MVFWELLTSP LEQVADDSLY EYLDFVDATD RYRSLWIWRL 301 350 ENSP00000330051/1-586 LGMSAGVCGI TALVGQLDCF LMTSGPRGVV HFYGYSVVST LALLVSIAFP ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- ---------- bmy_01697T0/1-590 LGMSAGVCGI SALVGQLDCF LTTNGPWGVV HFYGYSLVST LALLVSIAFP BACU001209/1-595 LGMSAGVCGI SALVGQLDCF LTTNGPRGVV HFYGYSLVST LALLVSIAFP 351 400 ENSP00000330051/1-586 IPICQQWEPS YKRVKALSIV GGDPHLILLA STTVLVGAIV STVQNFLFWH ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- ---------- bmy_01697T0/1-590 VPVCRRWEPS YKMVKALSLV GGDPRLITLA LTVFLIGTAT STVQNFLFWH BACU001209/1-595 VPVFRRWEPG YKMVKALSLV GGDPRLITLA LTVFLIGTAT STVQNFLFWH 401 450 ENSP00000330051/1-586 MKDHGSGELV MGFSVALSLL GEILLHPFKA TLLRKLSRTG LVGLGLSCLA ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- ---------- bmy_01697T0/1-590 MKDHESSELV MGFSVALGLL GEILLHPLKT PLLRKLSRVG TVGLGLGCLA BACU001209/1-595 MKDHESSELV MGFSVALGWL GEILLHPLKT PLLRKLSRVG TVGLGLGCLA 451 500 ENSP00000330051/1-586 GQLLYYSFLW SWWSVLPIQI LSAISNRALW WAVGASVEDL ATPRMERALS ENSBTAP00000048878/1-301 ---------- ---------- ---------- ---------- --PGTERPLS bmy_01697T0/1-590 GQLLYFSFLW SWWSVLPAQI LSAISHGALW WAVGASIEHL ATPGTERPLS BACU001209/1-595 GQLLYFSFLW SWWSVLPAQI LSAISHGALW WAVGASIEHL ATPGTERPLS 501 550 ENSP00000330051/1-586 ALFRGHFYGS GCSLGSFVGG FVVMRFSLAV LYQACCVALL LWLALLLSIQ ENSBTAP00000048878/1-301 AVFRAHVCGS GASLGSFVGG FVVMRFSLPV LYQACCVLLL LWLALFLSIQ bmy_01697T0/1-590 AMFRSHFYGG GASLGSFVGG FVVMRFSLAV LYRSCCVVLL LWLALFLSIQ BACU001209/1-595 AMFRSHFYGG GASLGSFVGG FVVMRFSLAV LYRACCVVLL LWLALFLFIQ 551 600 ENSP00000330051/1-586 RRLPRERKIK YSKLLSMEVS DTSDSEQGTE QDWLVKAMRE EHSD--- ENSBTAP00000048878/1-301 PRLPQERKIN YSKLLTVEAS DTSDSEQGTE RDWLVKAIRE EHSDWRG bmy_01697T0/1-590 PRLPQERKIN YSKLLAVEAS DTSDSEQGTE RDWLVKAMRD EHSDWRG BACU001209/1-595 PRLPQERKIN YSKLLAVEAS DTSDSEQGTE RDWLVKAMRD EHSDWRG