KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:28 2014 Check: 00 .. Name: ENSBTAP00000048880/1-773 Len: 784 Check: 3322 Weight: 1.00 Name: ENSP00000265769/1-775 Len: 784 Check: 7202 Weight: 1.00 Name: ENSTTRP00000010581/1-775 Len: 784 Check: 7098 Weight: 1.00 Name: BACU015304/1-230 Len: 784 Check: 8474 Weight: 1.00 Name: bmy_00915T0/1-552 Len: 784 Check: 2121 Weight: 1.00 // 1 50 ENSBTAP00000048880/1-773 --------LP VASFI-SNAI INSIKELPGV QNYEVVYPKR LHPRHKREVK ENSP00000265769/1-775 ---MLQGLLP VSLLL--SVA VSAIKELPGV KKYEVVYPIR LHPLHKREAK ENSTTRP00000010581/1-775 ---MWPGLLL TATLLLSPLP VNSIKELPGV KNYQVVYPRR LHPLHKREVK BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 MFTKLRNTVS VCAFL----- ---------- ---------- ---------- 51 100 ENSBTAP00000048880/1-773 DPGQQENFET ELKYEMTVNG KIAVLYLKKN KN--LLAPGY TETYYNSSGK ENSP00000265769/1-775 EPEQQEQFET ELKYKMTING KIAVLYLKKN KN--LLAPGY TETYYNSTGK ENSTTRP00000010581/1-775 DPGQQEKFET ELKYEMTVNG KIAVLYLKKN KG--LLAPGY TETYYNSTGK BACU015304/1-230 ----MEIWND KDKIKISPNA SLTLENFAKW RGGVLLR--- ---------R bmy_00915T0/1-552 ----QEKFET ELKYEMTVNG KIAVLYLKKN KG--LLAPGY TETYYNSTGK 101 150 ENSBTAP00000048880/1-773 AVTTSPQIMD NCYYQGHIVN EKVSDASIST CRGLRGYFSQ GDQKYFIEPL ENSP00000265769/1-775 EITTSPQIMD DCYYQGHILN EKVSDASIST CRGLRGYFSQ GDQRYFIEPL ENSTTRP00000010581/1-775 EVTTSPQIMD DCYYQGHIIN EKVSDASIST CRGLRGYFSQ GDQKYFIEPL BACU015304/1-230 KRHDVAQFIT ASEFSG---- ---------- ---------- ---------- bmy_00915T0/1-552 EVTTSPQIMD DCYYQGHIIN EKVSDASIST CRGLRGYFSQ GDQKYFIEPL 151 200 ENSBTAP00000048880/1-773 SLTNQDEQEH ALFKHDPEEQ KNKIPCCLHE CFWSHKIQFS VDLNSTFLQT ENSP00000265769/1-775 SPIHRDGQEH ALFKYNPDEK NYDSTCGMDG VLWAHDLQQN IALPATKLVK ENSTTRP00000010581/1-775 SPTNQDEQEH ALFKHDPDEQ KTNSNCGMDD MLWVPEIHQN AAPSATSLLK BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 SPTNQDEQEH ALFKHDPDEQ KTDSNCGMDD MLWVPEIHQN AVPSATSLVK 201 250 ENSBTAP00000048880/1-773 SKDQKFWEKK KYVEYYLVLD HGEFKRHNQD QEEIRKTVFE MVNYINMLYK ENSP00000265769/1-775 LKDRKVQEHE KYIEYYLVLD NGEFKRYNEN QDEIRKRVFE MANYVNMLYK ENSTTRP00000010581/1-775 SKDQKAWEQN KYIEYFLVLD NGEFKKYNQD QEEIRKRVFE MVNYINMLYK BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 SKDQKAWEQN KYIEYFLVLD NGEFKKYNQD QEEIRKRVFE MVNYINM--- 251 300 ENSBTAP00000048880/1-773 KLNTYVALIG MEIWNDKDKI DISSNAKLTL ENFSKWRTGV LLKRKHHDVA ENSP00000265769/1-775 KLNTHVALVG MEIWTDKDKI KITPNASFTL ENFSKWRGSV LSRRKRHDIA ENSTTRP00000010581/1-775 KLNTHVALIG MEIWNDKDKI KISPNASLTL ENFAKWREGV LLRRKRHDVA BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000048880/1-773 QLLTTVAFSG TTVGLAYIST MCSPDFSAGI IKDHSNNALQ VAGTMAHEMG ENSP00000265769/1-775 QLITATELAG TTVGLAFMST MCSPY-SVGV VQDHSDNLLR VAGTMAHEMG ENSTTRP00000010581/1-775 QLLTASEFSG TTVGLAFMST MCSPYHSVGI VQDHSHNMLS TAGTMAHEMG BACU015304/1-230 ---------- TTVGLAFTST MCSPYHSVGI VQDHSHNMLS VAGTMAHEMG bmy_00915T0/1-552 ---------- ---------- ---------- --DHSHNMLS VAGTMAHEMG 351 400 ENSBTAP00000048880/1-773 HNFGMFHDNY DCKCPSIECV MDGSLSINIP TDFSSCSRAS FEKFFEDKLS ENSP00000265769/1-775 HNFGMFHDDY SCKCPSTICV MDKALSFYIP TDFSSCSRLS YDKFFEDKLS ENSTTRP00000010581/1-775 HNYGMFHDTY ACKCPSTVCV MDRALTFYIP TDFSSCSRVS YEKFLEDKLS BACU015304/1-230 HNFGMFHDTY ACKCPSTVCV MDRALSFYIP TDFSSCSRVS YEKFLEDKLS bmy_00915T0/1-552 HNFGMFHDTY ACKCPSTVCV MDRALSFYIP TDFSSCSRVS YEKFLEDKLS 401 450 ENSBTAP00000048880/1-773 NCLFNVPLPT DIISTPICGN QLVEMGEDCD CGTPEECTNI CCDAKTCKMK ENSP00000265769/1-775 NCLFNAPLPT DIISTPICGN QLVEMGEDCD CGTSEECTNI CCDAKTCKIK ENSTTRP00000010581/1-775 NCLFNVPLPT DIISTPICGN QLLEMGEDCD CGTPEECTNV CCDAKTCKIK BACU015304/1-230 NCLFNVPLPT DIISTPICGN QLIEMGEDCD CGTPE----- ---------- bmy_00915T0/1-552 NCLFNVPLPT DIISTPICGN QLIEMGEDCD CGTPE----- ---------- 451 500 ENSBTAP00000048880/1-773 ENVQCALGEC CEKCQLKKAG EVCRPAKDEC DLPEMCDGKS TLCPSDRYQI ENSP00000265769/1-775 ATFQCALGEC CEKCQFKKAG MVCRPAKDEC DLPEMCNGKS GNCPDDRFQV ENSTTRP00000010581/1-775 ANFQCVVGEC CEKCQFKKAG EVCRPAKDEC DLPETCDGKS GLCPDDRFQV BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 ---------- -----FKKAG EVCRPAKDEC DLLEMCDGKS GLCPDDRFQV 501 550 ENSBTAP00000048880/1-773 NGFPCQNGKG YCRMGTCPTL EKQCTDLWGP GAQVADKSCF RRNEDGSTYG ENSP00000265769/1-775 NGFPCHHGKG HCLMGTCPTL QEQCTELWGP GTEVADKSCY NRNEGGSKYG ENSTTRP00000010581/1-775 NGFPCQNGKG YCLMGMCPTL EEQCTKLWGP GTQVADKSCF SRNEGGSSYG BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 NGFPCQNGKG YCLMGMCPTL EEQCTELWGP GTQVADKSCF SRNEGGSSYG 551 600 ENSBTAP00000048880/1-773 YCRKVNNTHI PCKAKDATCG KLFCNGGSDY LPWKGRIVTI LTCRLFDPED ENSP00000265769/1-775 YCRRVDDTLI PCKANDTMCG KLFCQGGSDN LPWKGRIVTF LTCKTFDPED ENSTTRP00000010581/1-775 YCRKVDDTRI PCKANDALCG KLFCNGGSDY LLWKGHIITF LTCKTFEPED BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 YCRKVDDTRI PCKANDAMCG KLFCNGGSDY LLWKGRIITF LTCKTFEPED 601 650 ENSBTAP00000048880/1-773 SSEEIGMVIN GTKCGDKKVC INAECVDMER TYKSANCSSK CKGHAVCDHE ENSP00000265769/1-775 TSQEIGMVAN GTKCGDNKVC INAECVDIEK AYKSTNCSSK CKGHAVCDHE ENSTTRP00000010581/1-775 SSQEISIVAN GTKCGENKVC INAECVDVER TYRSANCSSK CKGHAVCDHE BACU015304/1-230 ---------- --------VC INAECMDVER AYQSANCSSK CKGHAVCDHE bmy_00915T0/1-552 SSQEISIVAN GTKCGENKVC INAECMDVER AYQSANCSSK CKGHAVCDHE 651 700 ENSBTAP00000048880/1-773 LKCQCKEGWA PPDCSDSSTI FNFSIVVGVL LPVAVIFVML AIVIRCRSSR ENSP00000265769/1-775 LQCQCEEGWI PPDCDDSSVV FHFSIVVGVL FPMAVIFVVV AMVIRHQSSR ENSTTRP00000010581/1-775 LQCQCKEGWA PPDCGASSMV FNFSIVVGVL FPVAVIFVVV AIVTRCQSTR BACU015304/1-230 LQCQCKEGWA PPDCDGSSMV FSK------- ---------- ---------- bmy_00915T0/1-552 LQCQCKEGWA PPDCDGSSMV FNFSIVVGVL FPVAVVFVVV AIVTRYQSTR 701 750 ENSBTAP00000048880/1-773 EKQKLVQRPL STTDAGLHNQ KRKPQMAKTV QPQEFCWESK SYTYAAPVNA ENSP00000265769/1-775 EKQKKDQRPL STTGTRPHKQ KRKPQMVKAV QPQEMS-QMK PHVYDLPVEG ENSTTRP00000010581/1-775 GKRKEVRXXX XXXXXXXXXX XXXXXXXXXX XXXXMK-LDT P---DLLAEE BACU015304/1-230 ---------- ---------- ---------- ---------- ---------- bmy_00915T0/1-552 GKQKEVQR-- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000048880/1-773 SYVMGAKHRN IKGLSSTVFK DNPVSKSKDS NPKI ENSP00000265769/1-775 NEPPASFHKD TNALPPTVFK DNPVSTPKDS NPKA ENSTTRP00000010581/1-775 DAPPASVHKD IKGLSSAVFK DKPMSALKGS NPEV BACU015304/1-230 ---------- ---------- ---------- ---- bmy_00915T0/1-552 ---------- ---------- ---------- ----