KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:28 2014 Check: 00 .. Name: ENSP00000299798/1-896 Len: 905 Check: 244 Weight: 1.00 Name: ENSBTAP00000048897/1-900 Len: 905 Check: 8959 Weight: 1.00 Name: ENSTTRP00000000433/1-895 Len: 905 Check: 5542 Weight: 1.00 Name: bmy_05271T0/1-876 Len: 905 Check: 9252 Weight: 1.00 Name: BACU018372/1-873 Len: 905 Check: 1237 Weight: 1.00 // 1 50 ENSP00000299798/1-896 MLRAALSLLA LPLAGAA--E EPTQKPESPG EPPPGLELFR WQWHEVEAPY ENSBTAP00000048897/1-900 MLRAALPLLG LPLAGAGATE EPTQEPGSPG EPPPGLALFR WQWHEVEAPY ENSTTRP00000000433/1-895 MLRAALPLLW LPLAGAA--- EETQEPGSPG EPPPGLALFR WQWHEVEAPY bmy_05271T0/1-876 MLRAALLLLG LPLAGAGATE EPTQEPGSPG EPPPGLALFR WQWHEVEAPY BACU018372/1-873 ---------- ---------- ---------X EPPPGLALFR WQWHEVEAPY 51 100 ENSP00000299798/1-896 LVALWILVAS LAKIVFHLSR KVTSLVPESC LLILLGLVLG GIVLAVAKKA ENSBTAP00000048897/1-900 LVALWILVAS LAKIVFHLSR KVTSLVPESC LLILLGLALG GIVLAVAKKA ENSTTRP00000000433/1-895 LVALWILVAS LAKIXXXXXX XXXSLVPESC LLILLGLVLG GIVLAVAKKA bmy_05271T0/1-876 LVALWILVAS LAKIVFHLSR KVTSLVPESC LLILLGLVLG GIVLAVAKKA BACU018372/1-873 LVALWILVAS LAKIVFHLSR KVTSLVPESC LLILLGLVLG GIVLAVAKKA 101 150 ENSP00000299798/1-896 EYQLEPGTFF LFLLPPIVLD SGYFMPSRLF FDNLGAILTY AVVGTLWNAF ENSBTAP00000048897/1-900 EYQLEPGTFF LFLLPPIVLD SGYFMPSRLF FDNLGAILTY AVVGTLWNAF ENSTTRP00000000433/1-895 EYQLEPGTFF LFLLPPIVLD SGYFMPSRLF FDNLGAILTY AVVGTLWNAF bmy_05271T0/1-876 EYQLEPGTFF LFLLPPIVLD SGYFMPSRLF FDNLGAILTY AVVGTLWNAF BACU018372/1-873 EYQLEPGTFF LFLLPPIVLD SGYFMPSRLF FDNLGAILTY AVVGTLWNAF 151 200 ENSP00000299798/1-896 TTGAALWGLQ QAGLVAPRVQ AGLLDFLLFG SLISAVDPVA VLAVFEEVHV ENSBTAP00000048897/1-900 TTGAALWGLQ QAGLVAPRVQ AGLLDFLLFG SLISAVDPVA VLAVFEEVHV ENSTTRP00000000433/1-895 TTGAALWGLQ QAGLVAPRVQ AGLLDFLLFG SLISAVDPVA VLAVFEEVHV bmy_05271T0/1-876 TTGAALWGLQ QAGLVAPRVQ AGLLDFMLFG SLISAVDPVA VLAVFEEVHV BACU018372/1-873 TTGAALWGLQ QAGLVAPRVQ AGLLDFLLFG SLISAVDPVA VLAVFEEVHV 201 250 ENSP00000299798/1-896 NETLFIIVFG ESLLNDAVTV VLYKVCNSFV EMGSANVQAT DYLKGVASLF ENSBTAP00000048897/1-900 NETLFIIVFG ESLLNDAVTV VLYKVCNSFV EMGSANVRAT DYLKGVASLF ENSTTRP00000000433/1-895 NETLFIIVFG ESLLNDAVTV VLYKVCNSFV EMGSANVQAT DYLKGVASLF bmy_05271T0/1-876 NETLFIIVFG ESLLNDAVTV VLYKVCNSFV EMGSANVQAT DYLKGVASLF BACU018372/1-873 NETLFIIVFG ESLLNDAVTV VLYKVCNSFV EMGSANVQAT DYLKGVASLF 251 300 ENSP00000299798/1-896 VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS ENSBTAP00000048897/1-900 VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS ENSTTRP00000000433/1-895 VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS bmy_05271T0/1-876 VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS BACU018372/1-873 VVSLGGAAVG LVFAFLLALT TRFTKRVRII EPLLVFLLAY AAYLTAEMAS 301 350 ENSP00000299798/1-896 LSAILAVTMC GLGCKKYVEA NISHKSRTTV KYTMKTLASC AETVIFMLLG ENSBTAP00000048897/1-900 LSAILAVTMC GLGCKKYVEA NISHKSRTAV KYTMKTLASC AETVIFMLLG ENSTTRP00000000433/1-895 LSAILAVTMC GLGCKKYVEA NISHKSRTAV KYTMKTLASC AETIIFMLLG bmy_05271T0/1-876 LSAILAVTMC GLGCKKYVEA NISHKSRTAV KYTMKTLASC AETIIFMLLG BACU018372/1-873 LSAILAVTMC GLGCKKYVEA NISHKSRTAV KYTMKTLASC AETIIFMLLG 351 400 ENSP00000299798/1-896 ISAVDSSKWA WDSGLVLGTL IFILFFRALG VVLQTWVLNQ FRLVPLDKID ENSBTAP00000048897/1-900 ISAVDSSKWA WDSGLVLGTL FFILFFRALG VVLQTWVLNQ FRLVPLDKID ENSTTRP00000000433/1-895 ISAVDSSKWA WDSRLVLGTV FFILFFRALG VVLQTWVLNQ FRLVPLDKID bmy_05271T0/1-876 ISAVDSSKWA WDSGLVLGTL FFILFFRALG VVLQTWVLNQ FRLVPLDKID BACU018372/1-873 ISAVDSSKWA WDSGLVLGTL FFILFFRALG VVLQTWVLNQ FRLVPLDKID 401 450 ENSP00000299798/1-896 QVVMSYGGLR GAVAFALVIL LDRTKVPAKD YFVATTIVVV FFTVIVQGLT ENSBTAP00000048897/1-900 QVVMSYGGLR GAVAFALVIL LDRTKVPAKD YFVATTIVVV FFTVIVQGLT ENSTTRP00000000433/1-895 QVVMSYGGLR GAVAFALVIL LDRTKIPAKD YFVATTIVVV FFTVIVQGLT bmy_05271T0/1-876 QVVMSYGGLR GAVAFALVIL LDRTKIPAKD YFVATTIVVV FFTVIVQGLT BACU018372/1-873 QVVMSYGGLR GAVAFALVIL LDRTKIPAKD YFVATTIVVV FFTVIVQGLT 451 500 ENSP00000299798/1-896 IKPLVKWLKV KRSEHHKPTL NQELHEHTFD HILAAVEDVV GHHGYHYWRD ENSBTAP00000048897/1-900 IKPLVKWLKV KRSEHHKPTL NQELHEHTFD HILAAVEDVV GHHGYHYWRD ENSTTRP00000000433/1-895 IKPLVKWLKV KRSEHHKPTL NQELHEHTFD HILAAVEDVV GHHGYHYWRD bmy_05271T0/1-876 IKPLVKWLKV KRSEHHKPTL NQELHEHTFD HILAAVEDVV GHHGYHYWRD BACU018372/1-873 IKPLVKWLKV KRSEHHKPTL NQELHEHTFD HILAAVEDVV GHHGYHYWRD 501 550 ENSP00000299798/1-896 RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS FVDQGGHVLS ENSBTAP00000048897/1-900 RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS FVDQGGHVLS ENSTTRP00000000433/1-895 RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS FVDQGGHVLS bmy_05271T0/1-876 RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS FVDQGGHVLS BACU018372/1-873 RWEQFDKKYL SQLLMRRSAY RIRDQIWDVY YRLNIRDAIS FVDQGGHVLS 551 600 ENSP00000299798/1-896 STGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA ENSBTAP00000048897/1-900 STGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA ENSTTRP00000000433/1-895 STGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA bmy_05271T0/1-876 STGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA BACU018372/1-873 STGLTLPSMP SRNSVAETSV TNLLRESGSG ACLDLQVIDT VRSGRDREDA 601 650 ENSP00000299798/1-896 VMHHLLCGGL YKPRRRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF ENSBTAP00000048897/1-900 VMHHLLCGGL YKPRRRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF ENSTTRP00000000433/1-895 VMHHLLCGGL YKPRYRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF bmy_05271T0/1-876 VMHHLLCGGL YKPRYRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF BACU018372/1-873 VMHHLLCGGL YKPRYRYKAS CSRHFISEDA QERQDKEVFQ QNMKRRLESF 651 700 ENSP00000299798/1-896 KSTKHNICFT KSKPRPRKTG RRKK-DGVAN AEATNGK--- HRGLGFQDT- ENSBTAP00000048897/1-900 KSTKHNICFT KSKPRPRKAS RKKK-DGVAN TEATNGKP-- PRDLGFHDT- ENSTTRP00000000433/1-895 KSTKHNICFT KSKPRPRKAG RKKN-DGMAN TEA-NGKP-- PRXXXXXXXX bmy_05271T0/1-876 KSTKHNICFT KSKPRPRKAG RKKA------ ---------- ---------- BACU018372/1-873 KSTKHNICFT KSKPRPRKAG RKKAWDPAWG CAVPRGSCWW PTPLGSCPSP 701 750 ENSP00000299798/1-896 AAVILTVESE EEEEESDSSE TEKEDDEGII FVARATSEVL QEGKVSGSLE ENSBTAP00000048897/1-900 AAVILTVES- EEEEDSDSSE TEKEDDEGII FVARATSEVL QEGKVSGSLE ENSTTRP00000000433/1-895 XAVILTVES- EEEEDSDSSE TEKEDDEGII FVARATSEVL QEGKVSGSLE bmy_05271T0/1-876 SAVILTVES- EEEEDSDSSE TEKEDDEGII FVARATSEVL QEGKVSGSLE BACU018372/1-873 AAVILTVES- EEEEDSDSSE TEKEDDEGII FVARATSEVL QEGKVSGSLE 751 800 ENSP00000299798/1-896 VCPSPRIIPP SPTCAEKELP WKSGQGDLAV YVSSETTKIV PVDMQTGWNQ ENSBTAP00000048897/1-900 VCPSPRIIPP SPTCAEKELP WKSAQGDLAV YVSSETTKIV PVDMQTGWNQ ENSTTRP00000000433/1-895 VCPSPRIIPP SPTCAEKELP WKSGQGDLAV YVSSETTKIV PVDMQTGWNQ bmy_05271T0/1-876 VCPSPRIIPP SPTCAEKELP WKSGQGDLAV YVSSETTKIV PVDMQTGWNQ BACU018372/1-873 VCPSPRIIPP SPTCAEKELP WKSGQGDLAV YVSSETTKIV PVDMQTGWNQ 801 850 ENSP00000299798/1-896 SISSLESLAS PPCNQAPILT CLPPHPRGTE EPQVPLHLP- -SDPRSSFAF ENSBTAP00000048897/1-900 SISSLESLAS PPCTQAPTMT RLPPRPRAPE EPQAPLKLPL SSDPRSCFAF ENSTTRP00000000433/1-895 SISSLESLAS PPCTQAPPMT RLPPRSLVTE EPQAPLNLP- -SDLRPSFAF bmy_05271T0/1-876 SISSLESLAS PPCTQAPAMT RLPPRSLVTE EPQAPLNLP- -SDLRPSFAF BACU018372/1-873 SISSLESLAS PPCTQAPAMT RLPPRSLVTE EPQAPLNLP- -SDLRPSFAF 851 900 ENSP00000299798/1-896 PPSLAKAGRS RSESSADLPQ QQELQPLMGH KDHTHLSPGT ATSHWCIQFN ENSBTAP00000048897/1-900 PPSLAKAGRS RSESSADIPR QQELQPLMGH EDHTHLSPGT ANSHWCIHFN ENSTTRP00000000433/1-895 PTSLAKAGRS HSESSADIPQ QQELQPLMGH EDHTHLSPGT ANSHWCIQFN bmy_05271T0/1-876 PPSLAKAGRS HSESSADIPQ QQELQPLMGH EDHTHLSPGT ANSHWCIQFN BACU018372/1-873 PPSLAKAGRS HSESSADIPQ QQELQPLMGH EDHTHLSPGT ANSHWCIQFN 901 950 ENSP00000299798/1-896 RGSRL ENSBTAP00000048897/1-900 KGGRL ENSTTRP00000000433/1-895 RGGRL bmy_05271T0/1-876 RGGRL BACU018372/1-873 RGGRL