KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:29 2014 Check: 00 .. Name: ENSP00000318029/1-289 Len: 334 Check: 8470 Weight: 1.00 Name: ENSBTAP00000048914/1-277 Len: 334 Check: 6556 Weight: 1.00 Name: ENSTTRP00000015292/1-286 Len: 334 Check: 1985 Weight: 1.00 Name: bmy_06629T0/1-322 Len: 334 Check: 3503 Weight: 1.00 Name: BACU006554/1-265 Len: 334 Check: 6708 Weight: 1.00 // 1 50 ENSP00000318029/1-289 MGTLSCDSTP RLATAPLGRR VTEGQIPETG LRKSCGTATL ENGS------ ENSBTAP00000048914/1-277 MGTLTCDPAP RLTPAPLGRR ATDCQIPETS LRRTCGVATL EHGS------ ENSTTRP00000015292/1-286 MGTLPCDPAA RLTPVALGRR TTDCQIPETG LRRTCGVAPL ENGS------ bmy_06629T0/1-322 MGTLPCDPAP RLTPVALGRR ATECQIPETG LRRSCGVVPL ENGSSYSRTP BACU006554/1-265 MGTLPCDPAP RLTPVALGRR ATECQIPETG LRRSCGVVPL ENGS------ 51 100 ENSP00000318029/1-289 ---------- ---------- ---------- ---------G PGLYVLPSTV ENSBTAP00000048914/1-277 ---------- ---------- ---------- ---------G PGLYALPSTV ENSTTRP00000015292/1-286 ---------- ---------- ---------- ---------G PGLYALPSTV bmy_06629T0/1-322 AVETGWEARW GLRGWSPVSS PLSGCMAPGR DPQALVAGSG PGLYALPSTV BACU006554/1-265 ---------- ---------- ---------- ---------G PGLYALPSTV 101 150 ENSP00000318029/1-289 GFINHDCTRV ASPAYSLVRR PSEAPPQDTS PGPIYFLDPK VTRFGRSCTP ENSBTAP00000048914/1-277 GYINHDCTRV AGPAYSLFRR PIEASPQETS PGPVYFLDSK VTRFGRSCTP ENSTTRP00000015292/1-286 GYINHDCTRV AGPAYSLFRR PSEASPQETS PGPVYFLDPK VTRFGRSCTP bmy_06629T0/1-322 GYINHDCTRV AGPAYSLFRR PSEASPQETS PGPVYFLDPK VTRFGRSCTP BACU006554/1-265 GYINHDCTRV A--------- ---ASPQETS PGPVYFLDPK VTRFGRSCTP 151 200 ENSP00000318029/1-289 AYSMQGRAKS RGPEVTPGPG AYSPEKVPPV RHRTPPAFTL GCRLPLKPLD ENSBTAP00000048914/1-277 AYSMQGRGKS PGLEVTPGPG AYSPEKVAPM RQRTPPAFTL GSRLRPRPLN ENSTTRP00000015292/1-286 AYSMQGRGKS RDLEVTPGPG AYSPEKVAPT RQRTPPAFTL GSRIRPRPLD bmy_06629T0/1-322 AYSMQGRGKS RDLEVTPGPG AYSPEKVAPM RQRTPPAFTL GSRFRLRPLD BACU006554/1-265 AYSMQGRGKS RDLEVTPGPG AYSPEKVAPM HQRTPPAFTL GSRCRLRPLD 201 250 ENSP00000318029/1-289 TSAPAPNAYT MPPLWGSQIF TKPSSPSYTV VGRTPPARPP QDPAEIPGPG ENSBTAP00000048914/1-277 TSAPAPNTYT LPSLWGSQVF TKPSSPSYTV AGRTPPARPL QDPAEIPGPG ENSTTRP00000015292/1-286 TSVPAPNTYT LPSLWGSQIF TKPSSPSYTA AGRTPPVRPP QDPTEIPGPG bmy_06629T0/1-322 TSAPAPNSYT LPSLWGSQIF TKPSSPSYTA AGRTPPARPP QDPTEIPGPG BACU006554/1-265 TSAPAPNTYT LPSLWGSQIF TKPSSPSYTA AGRTPPARPP QDPTEIPGPG 251 300 ENSP00000318029/1-289 QYDSPDANTY RQRLPAFTML GRPRAPRPLE ETPGPGAHCP EQVTVNKARA ENSBTAP00000048914/1-277 QYDSPDPNAY RQRRPAFTML GRPRAPRPPD ETPGPGSHSP EQVTVTKARA ENSTTRP00000015292/1-286 QYDSPDPNAY RQRRPAFTML GRPRAPRPPD ETPGPGTHSP EQVTMTKARA bmy_06629T0/1-322 QYDSPDPNAY RQRRPAFTML GRPRAPRPPD ETPGPGTHSP EQVTMTKTRA BACU006554/1-265 QYDSPDPNAY RQRRPAFTML GRPRAPRPPD ETPGPGTHSP EQVTMTKARA 301 350 ENSP00000318029/1-289 PAFSMGIRHS KRASTMAATT PSRPAGHRLP GRCC ENSBTAP00000048914/1-277 PAFTMGIRHS KRATTMAADT AP-------- ---- ENSTTRP00000015292/1-286 PAFTMGIRHS KRATTMAVDT SP-CPGDRTP GW-- bmy_06629T0/1-322 PAFTMGIRHS KRATTMAADT AP-------- ---- BACU006554/1-265 PAFTMGIRHS KRATTMAADT AP-------- ----