KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:30 2014 Check: 00 .. Name: ENSBTAP00000048930/1-694 Len: 764 Check: 7617 Weight: 1.00 Name: bmy_00735T0/1-615 Len: 764 Check: 5532 Weight: 1.00 Name: BACU011946/1-720 Len: 764 Check: 8001 Weight: 1.00 Name: ENSP00000369666/1-694 Len: 764 Check: 7793 Weight: 1.00 Name: ENSTTRP00000014661/1-662 Len: 764 Check: 4498 Weight: 1.00 // 1 50 ENSBTAP00000048930/1-694 ---------- ---------- ---------- ---------- ------SPMD bmy_00735T0/1-615 MAADPPGAAE KGEMAPGTRT --PIPACVAA LQGPSPGALE GPFPPWMGLE BACU011946/1-720 MAADPPGAAE KGEMAPGTRV RPPSPPAVAA LQGPSPGALE GPFPPWMGLE ENSP00000369666/1-694 ---------- ---------- ---------- ---------- ------MGMK ENSTTRP00000014661/1-662 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000048930/1-694 GSGKGEAGPS ALLTPPMSSS SRGPGAGARR RRTRCRRCRA CVRTECGDCH bmy_00735T0/1-615 VPGKGEAG-- ---------- ---------- ---------- ---------- BACU011946/1-720 VPGKGEAGPS ALLTPPMSSS SRGPGAGARR RRTRCRRCRA CVRTECGDCH ENSP00000369666/1-694 VPGKGESGPS ALLTPPMSSS SRGPGAGARR RRTRCRRCRA CVRTECGDCH ENSTTRP00000014661/1-662 ---------- ------MSSS SRGPGAGARR RRTRCRRCRA CVRTECGDCH 101 150 ENSBTAP00000048930/1-694 FCRDMKKFGG PGRMKQSCLL RQCTAPVLPH TAVCLLCGEA GKEDTVEGEE bmy_00735T0/1-615 ---------- ---------- -----PVLPH TAVCLLCGEA GKEDTVEGEE BACU011946/1-720 FCRDMKKFGG PGRMKQSCLL RQCTAPVLPH TAVCLLCGEA GKEDTVEGEE ENSP00000369666/1-694 FCRDMKKFGG PGRMKQSCLL RQCTAPVLPH TAVCLLCGEA GKEDTVEGEE ENSTTRP00000014661/1-662 FCRDMKKFGG PGRMKQSCLL RQCTAPVLPH TAVCLLCGEA GKEDTVEGEE 151 200 ENSBTAP00000048930/1-694 EKFGLSLMEC TICNEIVHPG CLK------- ---MGKAEGV INAEIPNCWE bmy_00735T0/1-615 EKFGLSLMEC TICNEIVHPG CLK------- ---MGKAEGV INAEIPNCWE BACU011946/1-720 EKFGLSLMEC TICNEIVHPG CLKVMALGTL EAGMGKAEGV INAEIPNCWE ENSP00000369666/1-694 EKFGLSLMEC TICNEIVHPG CLK------- ---MGKAEGV INAEIPNCWE ENSTTRP00000014661/1-662 EKFGLSLMEC TICNEIVHPG CLK------- ---MGKAEGV INAEIPNCWE 201 250 ENSBTAP00000048930/1-694 CPRCTQEGRT SKDSGEGPGR RRADNGEEGA SLGSGWKLTE EPPLPPPPPR bmy_00735T0/1-615 CPRCTQEGRT SKDSGEGPGR RRADNGEEGA SLGSGWKLTE EPPLPPPPPR BACU011946/1-720 CPRCTQEGRT SKDSGEGPGR RRADNGEEGA SLGSGWKLTE EPPLPPPPPR ENSP00000369666/1-694 CPRCTQEGRT SKDSGEGPGR RRADNGEEGA SLGSGWKLTE EPPLPPPPPR ENSTTRP00000014661/1-662 CPRCTQEGRT SKDSGEGPGR RRADNGEEGA SLGSGWKLTE EPPLPPPPPR 251 300 ENSBTAP00000048930/1-694 RKGPLPAGPP SEDVPGPPKR KEREAGNEPP TPRKKVKGGR ERHLKKVGGD bmy_00735T0/1-615 RKGPLPAGPP PEDVPGPPKR KEREAGNEPS TPRKKVKGGR ERHLKK---- BACU011946/1-720 RKGPLPAGPP PEDVPGPPKR KEREAGNEPP TPRKKVKGGR ERHLKKVGGD ENSP00000369666/1-694 RKGPLPAGPP PEDVPGPPKR KEREAGNEPP TPRKKVKGGR ERHLKKVGGD ENSTTRP00000014661/1-662 RKGPLPAGPP PEDVPGPPKR KEREAGNEPP TPRKKVKGGR ERHLKKVGGD 301 350 ENSBTAP00000048930/1-694 ACLLRGSDPG GPGLLPPRVL NPSQAFSSCH PGLPPENWEK PKPPLASAEG bmy_00735T0/1-615 ---------- ---------- ---------- ---------K PKPPLASAEG BACU011946/1-720 ACLLRGSDPG GPGLLPPRVL NPSQAFSSCH PGLPPENWEK PKPPLASAEG ENSP00000369666/1-694 ACLLRGSDPG GPGLLPPRVL NPSQAFSSCH PGLPPENWEK PKPPLASAEG ENSTTRP00000014661/1-662 ACLLRGSDPG GPGLLPPRVL NPSQAFSSCH PGLPPENWEK PKPPLASAEG 351 400 ENSBTAP00000048930/1-694 PAVPSPSPQR EKLERFKRMC QLLERVPDTS SSSSDSDSDS DSSGTSLSED bmy_00735T0/1-615 PAVPSPSPQR EKLERFKRMC QLLERVPDTS SSSSDSDSDS DSSGTSLSED BACU011946/1-720 PAVPSPSPQR EKLERFKRMC QLLERVPDTS SSSSDSDSDS DSSGTSLSED ENSP00000369666/1-694 PAVPSPSPQR EKLERFKRMC QLLERVPDTS SSSSDSDSDS DSSGTSLSED ENSTTRP00000014661/1-662 PAVPSPSPQR EKLERFKRMC QLLERVPDTS SSSSDSDSDS DSSGTSLSED 401 450 ENSBTAP00000048930/1-694 EAPGEARNGR RPARGSSGEK ENRGGRRAVR PGSGGPLLSW PLGPAPPPRP bmy_00735T0/1-615 EAPGEARNGR RPARGSSGEK ENRGGRRAVR PGSGGPLLSW PLGPAPPPRP BACU011946/1-720 EAPGEARNGR RPARGSSGEK ENRGGRRA-- ---------- ---------- ENSP00000369666/1-694 EAPGEARNGR RPARGSSGEK ENRGGRRAVR PGSGGPLLSW PLGPAPPPRP ENSTTRP00000014661/1-662 EAPGEARNGR RPARGSSGEK ENRGGRRAVR PGSGGPLLSW PLGPAPPPRP 451 500 ENSBTAP00000048930/1-694 PQLERHVVRP PPRSPEPDTL PLAAGSDHPL PRAAWLRVFQ HLGPRELCIC bmy_00735T0/1-615 PQLERHVVRP PPRSPEPDTL PLAAGSDHPL PRAAWLR--- ---------- BACU011946/1-720 --LERHVVRP PPRSPEPDTL PLAAGSDHPL PRAAWLRVFQ HLGPRELCIC ENSP00000369666/1-694 PQLERHVVRP PPRSPEPDTL PLAAGSDHPL PRAAWLRVFQ HLGPRELCIC ENSTTRP00000014661/1-662 PQLERHVVRP PPRSPEPDTL PLAAGSDHPL PRAAWLRVFQ HLGPRELCIC 501 550 ENSBTAP00000048930/1-694 MRVCRTWSRW CYDKRLWPRM DLSRRKSLTP PMLSGVVRRQ PRALDLSWTG bmy_00735T0/1-615 ---------- ----RLWPRM DLSRRKSLTP PMLSGVVRRQ PRALDLSWTG BACU011946/1-720 MRVCRTWSRW CYDKRLWPRM DLSRRKSLTP PMLSGVVRRQ PRALDLSWTG ENSP00000369666/1-694 MRVCRTWSRW CYDKRLWPRM DLSRRKSLTP PMLSGVVRRQ PRALDLSWTG ENSTTRP00000014661/1-662 MRVCRTWSRW CYDKRLWPRM DLSRRKSLTP PMLSGVVRRQ PRALDLSWTG 551 600 ENSBTAP00000048930/1-694 VSKKQLMWLL NRLQGLQELV LSGCSWLSVS ALGSAPLPAL RLLDLRWIED bmy_00735T0/1-615 VSKKQLMWLL NRLQGLQELV LSGCSWLSVS ALGSAPLPAL RLLDLRWIED BACU011946/1-720 VSKKQLMWLL NRLQ------ ---------- ----APLPAL RLLDLRWIED ENSP00000369666/1-694 VSKKQLMWLL NRLQGLQELV LSGCSWLSVS ALGSAPLPAL RLLDLRWIED ENSTTRP00000014661/1-662 VSKKQLMWLL NRLQGLQELV LSGCSWLSVS ALGSAPLPAL RLLDLRWIED 601 650 ENSBTAP00000048930/1-694 VKDSQLRELL LPPPDTKP-- ---------- --GQTESRGR LQGVAELRLA bmy_00735T0/1-615 VKDSQLRELL LPPPDTKPGA ASVGSFVEGV GQGQTESRGR LQGVAELRLA BACU011946/1-720 VKDSQLRELL LPPPDTKPGA ASVGSFVEGV GQGQTESRGR LQGVAELRLA ENSP00000369666/1-694 VKDSQLRELL LPPPDTKP-- ---------- --GQTESRGR LQGVAELRLA ENSTTRP00000014661/1-662 VKDSQLRELL LPPPDTKP-- ---------- --GQTESRGR LQGVAELRLA 651 700 ENSBTAP00000048930/1-694 GLELTDASLR LLLRHAPQLS ALDLSHCAHV GDPSVHLLTA PTSPLRETLV bmy_00735T0/1-615 GLELTDASLR LLLRHAPQLS ALDLSHCAHV GDPSVHLLTA PTSPLRETLV BACU011946/1-720 GLELTDASLR LLLRHAPQLS ALDLSHCAHV GDPSVHLLTA PTSPLRETLV ENSP00000369666/1-694 GLELTDASLR LLLRHAPQLS ALDLSHCAHV GDPSVHLLTA PTSPLRETLV ENSTTRP00000014661/1-662 GLELTDASLR LLLRHAPQLS ALDLSHCAHV GDPSVHLLTA PTSPLRETLV 701 750 ENSBTAP00000048930/1-694 HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR SCRQLSPEAC ARLAAAGPPG bmy_00735T0/1-615 HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR SCRQLSPEAC ARLAAAGPPG BACU011946/1-720 HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR SCRQLSPEAC ARLAAAGPPG ENSP00000369666/1-694 HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR SCRQLSPEAC ARLAAAGPPG ENSTTRP00000014661/1-662 HLNLAGCHRL TDHCLPLFRR CPRLRRLDLR SCRQLSPEAC ARLAAAGPPG 751 800 ENSBTAP00000048930/1-694 PFRCPEEKLL LKDS bmy_00735T0/1-615 PFRCPEEKLL LKDS BACU011946/1-720 PFRCPEEKLL LKDS ENSP00000369666/1-694 PFRCPEEKLL LKDS ENSTTRP00000014661/1-662 PF-------- ----