KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:33 2014 Check: 00 .. Name: ENSP00000296805/1-779 Len: 812 Check: 9209 Weight: 1.00 Name: ENSTTRP00000004901/1-776 Len: 812 Check: 8733 Weight: 1.00 Name: ENSBTAP00000048999/1-777 Len: 812 Check: 8579 Weight: 1.00 Name: bmy_11585T0/1-678 Len: 812 Check: 4799 Weight: 1.00 Name: BACU006191/1-759 Len: 812 Check: 1423 Weight: 1.00 // 1 50 ENSP00000296805/1-779 MLTNLRIFAM SHQTIPSVYI -NNICCYKIR ASLKRLKPHV PLGRNCSSLP ENSTTRP00000004901/1-776 -MSNLRIFAV NHKKISSLHI -NNMCSSKIR ASLKRLRLHV LLGRNYSSLP ENSBTAP00000048999/1-777 -MSNLRIFAV NQKKISSLHY FNNMCSSKIR ASLKRLKLHV LLGRNYSSLP bmy_11585T0/1-678 -MSNLRIFAM NHKKISSLHI ---------- ---------- ---NTVHPVT BACU006191/1-759 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000296805/1-779 GLIGNDIKSL HSIINPPIAK IRNIGIMAHI DAGKTTTTER ILYYSGYTRS ENSTTRP00000004901/1-776 GLIGNDIKSL HSIINPPIAK IRNIGIMAHI DAGKTTTTER ILYYSGYTRS ENSBTAP00000048999/1-777 GLIGNDIKSL HSIINPPIAK IRNIGIMAHI DAGKTTTTER ILYYSGYTRS bmy_11585T0/1-678 GLIGNDIKSL HSIINPPIAK IRNIGIMAHI DAGKTTTTER ILYYSGYTRS BACU006191/1-759 -LIGNDIKSL HSIINPPIAK IRNIGIMAHI DAGKTTTTER ILYYSGYTRS 101 150 ENSP00000296805/1-779 LGDVDDGDTV TDFMAQERER GITIQSAAVT FDWKGYRVNL IDTPGHVDFT ENSTTRP00000004901/1-776 LGDVDDGDTV TDFMAQERER GITIQSAAVT FDWKGYRINL IDTPGHVDFT ENSBTAP00000048999/1-777 LGDVDDGDTV TDFMAQERER GITIQSAAVT FDWKGYRINL IDTPGHVDFT bmy_11585T0/1-678 LGDVDDGDTV TDFMAQERER GITIQSAAVT FDWKGYRINL IDTPG----- BACU006191/1-759 LGDVDDGDTV TDFMAQERER GITIQSAAVT FDWKGYRINL IDTPGHVDFT 151 200 ENSP00000296805/1-779 LEVERCLRVL DGAVAVFDAS AGVEAQTLTV WRQADKHNIP RICFLNKMDK ENSTTRP00000004901/1-776 LEVERCLRVL DGAVAVFDAS AGVEAQTLTV WRQADKHKIP RICFLNKMDK ENSBTAP00000048999/1-777 LEVERCLRVL DGAVAVFDAS AGVEAQTLTV WRQADKHKVP RICFLNKMDK bmy_11585T0/1-678 ---------- ---------E AKQKAQTLTV WRQADKHKIP RICFLNKMDK BACU006191/1-759 LEVERCLRVL DGAVAVFDAS AGVEAQTLTV WRQADKHKIP RICFLNKMDK 201 250 ENSP00000296805/1-779 TGASFKYAVE SIREKLKAKP LLLQLPIGEA KTFKGVVDVV MKEKLLWNCN ENSTTRP00000004901/1-776 IGASFNYAVE SIREKLKAKP LLLQLPIGEG KTFKGVVDVV SKEKLLWNPN ENSBTAP00000048999/1-777 IGASFNYAVE SIREKLKAKP LLLQLPIGEG KAFKGVVDVV RTEKLLWNPN bmy_11585T0/1-678 IGASFNYAVE SIREKLKAKP LLLQLPIGEG KTFKGVVDVV SKEKLLWNPN BACU006191/1-759 IGASFNYAVE SIREKLKAKP LLLQLPIGEG KTFKGVVDVV SKEKLLWNPN 251 300 ENSP00000296805/1-779 SNDGKDFERK PLLEMNDPEL LKETTEARNA LIEQVADLDD EFADLVLEEF ENSTTRP00000004901/1-776 SDDGKDFERK PLLEMSDPEL LKEITEARNA LIEQXXXXXX XXXXXXXXXX ENSBTAP00000048999/1-777 SDDGKDFERK PLLEMSDPKL LKETTEARNA LIEQVADLDD EFADLVLGEF bmy_11585T0/1-678 SDDGKDFERK PLLEMSDPEL LKEITEARNA LIEQVADLDD EFADLVLGEF BACU006191/1-759 SDDGKDFERK PLLEMSDPEL LKEITEARNA LIEQVADLDD EFADLVLGEF 301 350 ENSP00000296805/1-779 SENFDLLPAE KLQTAIHRVT LAQTAVPVLC GSALKNKGIQ PLLDAVTMYL ENSTTRP00000004901/1-776 XXXXXXXXXX XLQTAVHRVT LAQTAVPVLC GSALKNKGVQ PLLDAITMYL ENSBTAP00000048999/1-777 SENFDLLPAE KLQTAIHRVT LAQTAVPVLC GSALKNKGVQ PLLDAITMYL bmy_11585T0/1-678 SENFDLLPAE K--------- ---TAVPVLC GSALKNKGVQ PLLDAITMYL BACU006191/1-759 SENFDLLPAE KLQTAVHRVT LAQTAVPVLC GSALKNKGVQ PLLDAITMYL 351 400 ENSP00000296805/1-779 PSPEERNYEF LQWYKDDLCA LAFKVLHDKQ RGPLVFMRIY SGTIKPQLAI ENSTTRP00000004901/1-776 PSPEERNYEF LQWYKGDLCA LAFKVLHDKQ RGPLVFLRIY SGMIKRQLAI ENSBTAP00000048999/1-777 PSPEERNYEF LQWYKGDLCA LAFKVLHDKQ RGPLVFMRIY SGMLKPQTAI bmy_11585T0/1-678 PSPEERNYEF LQWYKGDLCA LAFKVLHDKQ RGPLVFMRIY SGMIKPQLAI BACU006191/1-759 PSPEERNYEF LQWYKGDLCA LAFKVLHDKQ RGPLVFMRIY SGMIKPQLAI 401 450 ENSP00000296805/1-779 HNINGNCTER ISRLLLPFAD QHVEIPSLTA GNIALTVGLK HTATGDTIVS ENSTTRP00000004901/1-776 HNINGNCTER ISRLLLPFAD QHVEIPSLTA GNIALTVGLK HTATGDTIVS ENSBTAP00000048999/1-777 HNINGNCTER VSRLLLPFAD QHIEIPLLTA GNIALTVGLK HTATGDTIVS bmy_11585T0/1-678 HNINGNCTER ISRLLLPFAD QHVEIPSLTA GNIALTVGLK HTATGDTIVS BACU006191/1-759 HNINGNCTER ISRLLLPFAD HHVEIPSLTA GNMALTVGLK HTATGDTIVS 451 500 ENSP00000296805/1-779 SKSSALAAAR RAEREGEKKH RQNNEAERLL LAGVEIPEPV FFCTIEPPSL ENSTTRP00000004901/1-776 SKSSALAACR RAEREGEKKH RQNDEAERLL LAGVEIPEPV FFCTIEPPSV ENSBTAP00000048999/1-777 SRSSALAASR RAKREGEKKQ KENNEAERLL LAGVEIPEPV FFCTIEPPSM bmy_11585T0/1-678 SKSSALAACR RAEREGEKKH RQNSEAERLL LAGVEIPEPV FFCTIEPPSM BACU006191/1-759 SKSSALAACR RAEREGEKKH RQNSEAERLL LAGVEIPEPV FFCTIEPPSM 501 550 ENSP00000296805/1-779 SKQPDLEHAL KCLQREDPSL KVRLDPDSGQ TVLCGMGELH IEIIHDRIKR ENSTTRP00000004901/1-776 AKQPDLDHAL KCLQREDPSL KVKLDPDSGQ TILCGMGELH IEIIHDRIKR ENSBTAP00000048999/1-777 AKQPDLDHAL KCLQREDPSL KVKLDPDSGQ TVLCGMGELH IEIIHDRIKR bmy_11585T0/1-678 AKQPDLDHAL KCLQREDPSL KVKLDPDSGQ TILCGMGELH IEIIHDRIKR BACU006191/1-759 AKQPDLDHAL KCLQREDPSL KVKLDPDSGQ TILCGMGELH IEIIHDRIKR 551 600 ENSP00000296805/1-779 EYGLETYLGP LQVAYRETIL NSVRATDTLD RTLGDKRHLV TVEVEARPIE ENSTTRP00000004901/1-776 EYGLETYLGP LQVAYRETIL NSVRATXXXD RTLGDRRHLV TVELEAKSLE ENSBTAP00000048999/1-777 EYGLETYLGP LQVAYREAIL NSIRATDTLD RTLGDKRHLV TVELEAKPVE bmy_11585T0/1-678 EYGLETYLGP LQVAYRETIL NSVRAT---D RTLGDRRHLV TVELEAKSLE BACU006191/1-759 EYGLETYLGP LQVAYRETIL NSVRATDTLD RTLGDRRHLV TVELEAKSLE 601 650 ENSP00000296805/1-779 TSSVMPVIEF EYAESINEGL LKVSQEAIEN GIHSACLQGP LLGSPIQDVA ENSTTRP00000004901/1-776 TSSLLPVI-- EYAASVAQDL SQASREAIEN GLHSACLQGP LLGSPVQDVA ENSBTAP00000048999/1-777 TSSLLPVI-- EYAASVAGDL SQASREAFEN GVHSACLQGP LLGSPVQDVA bmy_11585T0/1-678 TSSLLPVI-- EYAASVAEDL SQASREAIEN GLHSACLQG- ---------- BACU006191/1-759 TSSLLPVI-- EYAASVAEDL SQASREAIEN GLHSACLQGP LLGFPIQDVA 651 700 ENSP00000296805/1-779 ITLHSLTIHP GTSTTMISAC VSRCVQK--- ---------- ---------- ENSTTRP00000004901/1-776 ITLHSLAIHP GTSTAMISAC VSRCLQK--- ---------- ---------- ENSBTAP00000048999/1-777 VTLHSLVIHP GTSTTMISAC VSRCLQK--- ---------- ---------- bmy_11585T0/1-678 ---------- ---------- ------K--- ---------- ---------- BACU006191/1-759 ITLHSLVIHP GTSTTMISAC VSRCLQKLSP LFPSLIALTC SMGYNYRYQK 701 750 ENSP00000296805/1-779 ---------A LKKADKQVLE PLMNLEVTVA RDYLSPVLAD LAQRRGNIQE ENSTTRP00000004901/1-776 ---------A LKKADKQILE PLMNLEVTVT RDYLSPVLAD LAQRRGNIQE ENSBTAP00000048999/1-777 ---------A LKKADKQILE PLMNLEVTVS REYLSPVLAD LAQRRGNIQE bmy_11585T0/1-678 ---------A LKKADKQILE PLMNLEVTVT RDYLSPVLAD LAQRRGNIQE BACU006191/1-759 REKRFKYEEA LKKADKQILE PLMNLEVTVT RDYLSPVLAD LAQRRGNIQE 751 800 ENSP00000296805/1-779 IQTRQDNKVV IGFVPLAEIM GYSTVLRTLT SGSATFALEL STYQAMNPQD ENSTTRP00000004901/1-776 IQTRQDNKVV IGFVPLAEIM GYSTVLRTLT SGSATFALEL SNYQAMNPQD ENSBTAP00000048999/1-777 IQSRQDNKVV IGYVPLAEIM GYSTVLRTLT SGSATFALEL SNYQAMNPQD bmy_11585T0/1-678 IQTRQDNKVI IGFVPLAEIM GYSTVLRTLT SGSATFALEL SNYQAMNPQD BACU006191/1-759 IQTRQDNKVI IGFVPLAEIM GYSTVLRTLT SGSATFALEL SNYQAMNPQD 801 850 ENSP00000296805/1-779 QNTLLNRRSG LT ENSTTRP00000004901/1-776 QSTLLSQRSG SS ENSBTAP00000048999/1-777 QSTLLSQRHG LS bmy_11585T0/1-678 QSTLLSQRSG LS BACU006191/1-759 QSTLLSQRSG LS