KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:33 2014 Check: 00 .. Name: ENSBTAP00000049012/1-316 Len: 316 Check: 9978 Weight: 1.00 Name: ENSTTRP00000011170/1-281 Len: 316 Check: 5892 Weight: 1.00 Name: ENSP00000297994/1-316 Len: 316 Check: 4972 Weight: 1.00 Name: bmy_02843T0/1-199 Len: 316 Check: 124 Weight: 1.00 // 1 50 ENSBTAP00000049012/1-316 MDWKLEGSAQ KTESRVLQEH EITLDDPGED GVSESFQLLQ IDVGCEHWEQ ENSTTRP00000011170/1-281 MDWKLEGSSQ KTESHVLQEQ EVTLEDTGED GISESFQLLQ IDVECEHREE ENSP00000297994/1-316 MDWKLEGSTQ KVESPVLQGQ EGILEETGED GLPEGFQLLQ IDAEGECQEG bmy_02843T0/1-199 MDWKLEGSAQ KTESHVLQEQ EVTLEDTGED GISESFQLLQ IDVECEHREE 51 100 ENSBTAP00000049012/1-316 ETLPTGSAAW CSKNVQRKQR HWEKIVAAKK SKRKQEKERR KANRVENSGI ENSTTRP00000011170/1-281 MTLPTSNAVW RSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI ENSP00000297994/1-316 EILATGSTAW CSKNVQRKQR HWEKIVAAKK SKRKQEKERR KANRAENPGI bmy_02843T0/1-199 MTLPTSNAVW RSQNVQRKQR HWEKVVAAKK SKRKQEKERR KANRAENSGI 101 150 ENSBTAP00000049012/1-316 YPQHSKRFLR SLIKERLLEA KHSGPRLCID LSMTNHMSKK GEECLPGCMF ENSTTRP00000011170/1-281 YPQHSKRFLR SLTKERLLQA KHSGPRLCID LSMTHHMSKK ELSRLAGQIR ENSP00000297994/1-316 CPQHSKRFLR ALTKDKLLEA KHSGPRLCID LSMTHYMSKK ELSRLAGQIR bmy_02843T0/1-199 YPQHSKRFLR SLTKERLLEA KHSGPRLCID LSMTHHMSKK ELSRLAGQIR 151 200 ENSBTAP00000049012/1-316 HMYSSGKEHD TAQHLGHMGL RSVSPCFSEK IRMERNSTQY LLDRTEEDCF ENSTTRP00000011170/1-281 RLYGSNKKAD RPFWICLTGF TTDSPLYEEC LRMNDGFSSY LLDITEEDCF ENSP00000297994/1-316 RLYGSNKKAD RPFWICLTGF TTDSPLYEEC VRMNDGFSSY LLDITEEDCF bmy_02843T0/1-199 RLYGSNKKAD RPFWICLTGF TTDSPLYEEC LRMNDGFSSY LVSLI----- 201 250 ENSBTAP00000049012/1-316 SLFPLETLVY LTPDSDHALE NVDLNKVYIL GGLVDESIQK KVTFQKAQEH ENSTTRP00000011170/1-281 SLFPLETLVY LTPDSEHALE DVDLNKVYIL GGLVDESIQK KVTFQKAQEH ENSP00000297994/1-316 SLFPLETLVY LTPDSEHALE DVDLNKVYIL GGLVDESIQK KVTFQKAREY bmy_02843T0/1-199 ---------- ---------- ------LHII ---------- ---------- 251 300 ENSBTAP00000049012/1-316 SVKTARLPIQ EYMVKCQNGK NYHSEILTIN QVFDILSTYF ETQNWPEALK ENSTTRP00000011170/1-281 SVKTARLPIQ EYMIRRQNGK NYHSEILAIN Q--------- ---------- ENSP00000297994/1-316 SVKTARLPIQ EYMVRNQNGK NYHSEILAIN QVFDILSTYL ETHNWPEALK bmy_02843T0/1-199 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000049012/1-316 KGVSSRKGYV LRNSVE ENSTTRP00000011170/1-281 ---------- ------ ENSP00000297994/1-316 KGVSSGKGYI LRNSVE bmy_02843T0/1-199 ---------- ------