KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:33 2014 Check: 00 .. Name: ENSP00000360215/1-429 Len: 589 Check: 7560 Weight: 1.00 Name: ENSBTAP00000049015/1-431 Len: 589 Check: 1789 Weight: 1.00 Name: ENSTTRP00000000646/1-353 Len: 589 Check: 1204 Weight: 1.00 Name: bmy_00232T0/1-452 Len: 589 Check: 358 Weight: 1.00 Name: BACU011289/1-569 Len: 589 Check: 7169 Weight: 1.00 // 1 50 ENSP00000360215/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049015/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000646/1-353 ---------- ---------- ---------- ---------- ---------- bmy_00232T0/1-452 ---------- ---------- ---------- ---------- ---------- BACU011289/1-569 MGLLVTQRGI GFSFPFCYLD QNSGSELLGA GGGVNGPFEN LQKRYILLPE 51 100 ENSP00000360215/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049015/1-431 ---------- ---------- ---------- ---------S EPAADSKSPR ENSTTRP00000000646/1-353 ---------- ---------- ---------- ---------- ---------- bmy_00232T0/1-452 -----LGEAG ISPQLPEAPP GPQKHTQPQP GPPSPGHGVG EPAAALKSPG BACU011289/1-569 IADSWLGEAG ISPQLPEAPP GPQKHTQPRP GPPSPGHGVR EPAAAFKSPG 101 150 ENSP00000360215/1-429 -------MAQ APADPGR--- ---------- ---------- --EGHLEQRI ENSBTAP00000049015/1-431 PLAAAARMAE VPADPGD--- ---------- ---------- ---TDLEQRI ENSTTRP00000000646/1-353 -------MAE APASPGD--- ---------- ---------- ---ADIEQRI bmy_00232T0/1-452 LPAAAASMAE APANPGD--- ---------- ---------- ---ADLEQRI BACU011289/1-569 LPAAAASMAE APANPGDADS PFNRRVTYTS SVSQLPVHQP EDSADLEQRI 151 200 ENSP00000360215/1-429 LQVLTEAGSP VKLAQLVKEC QAPKRELNQV LYRMKKELK- VSLTSPATWC ENSBTAP00000049015/1-431 LEVLRDAGSP VKTAQLLKKF QVPKKKLNQL LHKMKQESKG VMLTGPATWC ENSTTRP00000000646/1-353 LEVLRDSGSP VKTAQLVMKC QVPRKKLNQV LYKMQKESKA VC-VGPATWS bmy_00232T0/1-452 LEVLRDSGSP VKTAQLVKKC QVPKKKLNQV LHKVKKESKG VLLVGPATWC BACU011289/1-569 LEVLRDSDSP VKTAQLVKKC QVPKKKLSQV LHKVKKESKG VLLVGPATWC 201 250 ENSP00000360215/1-429 LGGTDPEGEG PAELALSSPA ERPQQHAATI PETPGPQFSQ QREEDIYRFL ENSBTAP00000049015/1-431 LGDGGTKEVV PTER-----A ERPQQDTVAI PKKPGPQLS- KQEEEIYQFL ENSTTRP00000000646/1-353 LANGGTEEVV PAEL-----A ERPQKDAAAI PRKPGPELS- QRQEEIFRFL bmy_00232T0/1-452 LADGGAKEAV PAEL-----A ERPQKDAVAI PRKPGPELS- QR-------- BACU011289/1-569 LADGGAKEVV PAEL-----A ERPQEDAVAI PRKPGPELS- QRQEEIFRFL 251 300 ENSP00000360215/1-429 KDNGPQRALV IAQALGMRTA KDVNRDLYRM KSRHLLDMDE QSKAWTIYRP ENSBTAP00000049015/1-431 EAHGPHKALM IAKALGMKTA KEVNPDLYAM RDKHLLDFDQ KSNSWTIYRS ENSTTRP00000000646/1-353 EAHGPHRALI IAQALGMKTA KEVNPDLYAM RNKHLLDLDQ KSNTWAIYRP bmy_00232T0/1-452 ---------- ---------P KEVNPDLYAM RNKHLLDLDQ KSNSWAIYQP BACU011289/1-569 EAHGPRRALI IAQSLGMKTA KEVNPDLYAM RNKHLLDLDQ KSNSWAIYQP 301 350 ENSP00000360215/1-429 EDSGRRAKSA SIIYQHNPIN MICQNGPNSW ISIANSEAIQ IGHGNIITRQ ENSBTAP00000049015/1-431 E--GSRNQST PVIYQQNPIN MICQKGPNSH ISIQNCEDIQ IGHGNLLVRQ ENSTTRP00000000646/1-353 E--GSTNQST PVIYQQNPVN MISQNGPNSH ISIENSKAIQ IGHRNVIVGQ bmy_00232T0/1-452 ---------- -VIYQQNPIN MISQNGPSSH ISIANSKGIQ IGHENVIVRK BACU011289/1-569 E--GSRNQSS PVIYQQNPIN MICQNGPSSH ISIENSKGIQ IGHGNVIVRK 351 400 ENSP00000360215/1-429 TVSREDGSAG PRHLPSMAPG DSSTWGTLVD PWGPQDIHME QSILRRVQLG ENSBTAP00000049015/1-431 MGSAENGSTA PCYLPPMASA DPSTLDSQAG SWGPQDIQME KSVLRRVQMG ENSTTRP00000000646/1-353 MASGEKGSSA PLYLPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVQMG bmy_00232T0/1-452 MASGENGSTA PLYLPPMAPT DPSTQGPLAG SWGPQDIRRE KSVLRHVQMG BACU011289/1-569 MAPGENGSTA PLYLPPMAST DPSTQGPLAG SWGPQDIRME KSVLRHVQMG 401 450 ENSP00000360215/1-429 HSNEMRLHGV PSEGPAHIPP GSPPVSATAA GPEASFEARI PSPGTHPEGE ENSBTAP00000049015/1-431 HGNEMRLHSN PAKGSAHSAC DSPPASVLGT SPDASIEIQI PEPGPQSEGV ENSTTRP00000000646/1-353 HGNEMSLHSN PAKGPAHSAC GSPPVSVLGT GPEASIKIQI PEPGPHSEGG bmy_00232T0/1-452 QGNEMSLHGS PAKGPAHNAC GSPPVSVLGT GPEASIEIQI PEPGPHSEGG BACU011289/1-569 HGNEMSLHDS PAKGPAHSAC GSPPVSVLGT GPEASIEIQI PEPGPHSEGG 451 500 ENSP00000360215/1-429 AAQRIHMKSC FLEDATIGNS NKMSISPGVA GPGGVAGSGE GEPGEDAGRR ENSBTAP00000049015/1-431 TSQRVHIRSC FLEDTTVGNS NRMMVHPGAA DVKGVKRP-- GETGGDAGEP ENSTTRP00000000646/1-353 VAQRVHIRSC FLEETTVGNN NKMTVNPGAA DPRGVARA-- GEPGGST--- bmy_00232T0/1-452 MAQRVHIRSC FLEDTTVGNN NKMTVNPGAA DPGGVARA-- SEPGGSADPP BACU011289/1-569 MAQRVHIRSC FLEDTTIGNN NKMTINPGAA HPGGVARA-- SEPGGSADPP 501 550 ENSP00000360215/1-429 PADTQSR--- ------SHFP RDIGQPITPS HSK--LTPKL ETMTLGNRSH ENSBTAP00000049015/1-431 GAGRGPHALS LIHSTVSEVP -PVGSQADPV SAETLISEKL TAMTLERHDS ENSTTRP00000000646/1-353 ---------- ---------- ---------- ---------- ---------- bmy_00232T0/1-452 SGAARSR--- ------SEVP -PGGSQAAPV NAEMLISEEL AAMTLKKPGS BACU011289/1-569 SGAARSR--- ------SEVP -PGGSQAATV NAETLISEEL AAMTLKEPGS 551 600 ENSP00000360215/1-429 KAAEGSHYVD EASHEGSWWG GGI------- --------- ENSBTAP00000049015/1-431 ERTEDTC--- ---------- ---------- --------- ENSTTRP00000000646/1-353 ---------- ---------- ---------- --------- bmy_00232T0/1-452 QKRGRHLLRD RAAEAVSPEG GTHSDQPAGG LAQGGPGSQ BACU011289/1-569 QKRRRRLLSD RDAEPVSPEG GTQSKQPAGG LAQEGPGSQ