KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:35 2014 Check: 00 .. Name: ENSBTAP00000049054/1-568 Len: 1100 Check: 4137 Weight: 1.00 Name: bmy_21434T0/1-1012 Len: 1100 Check: 346 Weight: 1.00 Name: BACU005936/1-586 Len: 1100 Check: 7777 Weight: 1.00 Name: ENSTTRP00000001868/1-516 Len: 1100 Check: 2238 Weight: 1.00 // 1 50 ENSBTAP00000049054/1-568 ASGRPPFLQV PMAAAAAQPD QEQGLM---- ---------- --------AF bmy_21434T0/1-1012 ---------- ---MAAAQTD PAQVSSGNPR PPPTRMPPPW TRAPIEGGTL BACU005936/1-586 ---------- ---MAAAQTD PAQGLM---- ---------- --------AF ENSTTRP00000001868/1-516 ---------- ---------- -----M---- ---------- --------AF 51 100 ENSBTAP00000049054/1-568 EDVAVHFSQE EWG------- ---------- ---LLDTAQR ALYRRVML-- bmy_21434T0/1-1012 PGRLVFPSRF VLGPAVPSPS GAANTVLLTG TIELLQEPCP VMRPRVSLVA BACU005936/1-586 EDVAVYFSRE EWG------- ---------- ---LLDAAQR ALYRCVML-- ENSTTRP00000001868/1-516 EDVAVYFSRE EWG------- ---------- ---LLDAAQR ALYRRVML-- 101 150 ENSBTAP00000049054/1-568 --------EN FALLASLGLS VSRPRVVTQL ECGNEPWVLS GADVTLAWDA bmy_21434T0/1-1012 QMMPSVAHEA LTPAICQGLS VSRPRVVIQL ECGEEPWVLN GTDVTLARNA BACU005936/1-586 --------EN FTLLASLGLS VSRPRVVIQL ECGEEPWVLN GTDVTLASTA ENSTTRP00000001868/1-516 --------EN FTLLASLGLS VSRPHVVIQL ECGKEPWVLN GTDVTLARNA 151 200 ENSBTAP00000049054/1-568 QRRPHH---- ---------- ---------- ---------G SPPLVEDGCV bmy_21434T0/1-1012 QRRPSP---- ---------- ---------- ---------G SPHLAEDRDV BACU005936/1-586 QRRPSPASHP TDSFHHQPLL EAPALAALEG ELQGPPPGHG SPHLAEDRDV ENSTTRP00000001868/1-516 QRRPSP---- ---------- ---------- ---------A SPHLAEDRDV 201 250 ENSBTAP00000049054/1-568 SGEAPFPGAF GDGSPLAPAR VLPTAGACER GKIPEGRRSI SPSRERRPTG bmy_21434T0/1-1012 SGEAALPGAF RDGPPLAPTR VLPSAGASEQ ---------- -------PGG BACU005936/1-586 SGEAALPGAF QDGPPLALTR VLPSAGASER GKSLEGRRGV SPSRERKPTG ENSTTRP00000001868/1-516 SGX------- -------PTR VL-SAGASEC GKSLEGRCGV SPSRERKPTG 251 300 ENSBTAP00000049054/1-568 VSVIYWERLR LGPGRGDASV SLRLTSSLRP PPGDKALAEH PTPSQPPRVS bmy_21434T0/1-1012 ---------- ---------- -----SARRV PLSGEETADH PAPGKQPRAS BACU005936/1-586 VSVIYWE--- ----SGEASV SLRLTSSLRA PPGGKALA-- --PGKQPRAS ENSTTRP00000001868/1-516 VSVIYWE--- ----SGETSV SLRLTSSLRA PPGEKALADH PAPGKQPRAS 301 350 ENSBTAP00000049054/1-568 ERRKPWAREA PGGAFSSAPG APGARGMGPA WR-------- -EPPGWAELS bmy_21434T0/1-1012 ERQKLYAREA AGRAFPGAPE AQGARGMGEA WREPQRLLAV PEPPTWAELG BACU005936/1-586 ERQKLYAREA PGRAFPGAPE AQGARGMGEA WREPQRLLAV PEPPTWAELG ENSTTRP00000001868/1-516 ERQKLYACEA PGRAFPGAPE --GDRGMGEA WREPQRLLAV SEPPTWAELG 351 400 ENSBTAP00000049054/1-568 EALQPGPGLL SGEKPFECRA CSKVFVKSSD LLKHLRTHTG ERPYECTQCG bmy_21434T0/1-1012 EALNAGPGLL SGEKPFECRA CSKVFVKSSD LLKHLRTHTG ERPYECAQCG BACU005936/1-586 KALHAGPGLL SGEKPFECRA CSKVFVKSSD LLKHLRTHTG ERPYECAQCG ENSTTRP00000001868/1-516 EALHA----- -GEKPFECRA CSKVFVKSSD LLKHLRTHTG ERPYECAQCG 401 450 ENSBTAP00000049054/1-568 KAFSQTSHLT QHQRIHSGET PYSCLACGQA FRHSSSLVRH QRIHTAEKAF bmy_21434T0/1-1012 KAFSQTSHLT QHQRIHSGET PYTCPACGQA FRHSSSLVRH QRIHTAEKAF BACU005936/1-586 KAFSQTSHLT QHQRIHSGET PYTCPACGQA FRHSSSLVRH QRIHTAEKAF ENSTTRP00000001868/1-516 KAFSQTSHLT QHQRIHSGET PYTCPACGQA FRHSSSLVRH QRIHTAEKAF 451 500 ENSBTAP00000049054/1-568 RCAECGKAFS HRSNLSQHRK IHAGGRPYAC ARCGRSFCRN SHLIQHERTH bmy_21434T0/1-1012 RCAECGKAFS HRSNLSQHRK IHAGGRPYAC TRCGRSFCRN SHLIQHERTH BACU005936/1-586 RCAECGKAFS HRSNLSQHRK IHAGGRPYAC TRCGRSFCRN SHLIQHERTH ENSTTRP00000001868/1-516 RCAECGKAFS HRSNLSQHRK IHAGGRPYAC TRCGRSFCRN SHLIQHERTH 501 550 ENSBTAP00000049054/1-568 TGEK------ ---------- ---------- --PFACALCG AAFSQGSSLF bmy_21434T0/1-1012 TGEKPFACAL CGAAFSQGSS LFKHRRVHTG EKPFACALCG AAFSQGSSLF BACU005936/1-586 TGEK------ ---------- ---------- --PFACALCG AAFSQGSSLF ENSTTRP00000001868/1-516 TGEK------ ---------- ---------- --PFACALCG AAFSQGSSLF 551 600 ENSBTAP00000049054/1-568 KHRRVHTGEK PFACAQCGRA FSHSSNLRQH RLLHTGERPF RCADCGKAFA bmy_21434T0/1-1012 KHRRVHTGEK PFACAQCGRA FSHSSNLRQH RLLHTGERPF RCSDCGKAFA BACU005936/1-586 KHRRVHTGEK PFACAQCGRA FSHSSNLRQH RLLHTGERPF RCSDCGKAFA ENSTTRP00000001868/1-516 KHRRVHTGEK PFACAQCGRA FSHSSNLRQH RLLHTGERPF RCSDCGKAFA 601 650 ENSBTAP00000049054/1-568 KGAVLLSHRR IHTGEKPFVC AHCGRAFRER PALFHHQRLH TGEKPARRPR bmy_21434T0/1-1012 KGAVLLSHRR IHTGEKPFVC AQCGRAFRER PALFHHQRLH TGEKPARRPR BACU005936/1-586 KGAVLLSHRR IHTGEKPFVC AQCGRAFRER PALFHHQRLH TGEKPARRPR ENSTTRP00000001868/1-516 KGAVLLSHRR IHTGEKPFVC AQCGRAFRER PALFHHQRLH TGEKPARRPR 651 700 ENSBTAP00000049054/1-568 AGPRPPSRPP SGAS-----P EGAL------ ---------- ---------- bmy_21434T0/1-1012 AGPLPQARPP SGASLPSVDP EATLADPEAA RQRFRGFCYQ EVAGPREALA BACU005936/1-586 AGPLPQARPP SGAS-----S EGTL------ ---------- ---------- ENSTTRP00000001868/1-516 ASPLPQARPP SGAS-----C EGTL------ ---------- ---------- 701 750 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- --GREAGLP- bmy_21434T0/1-1012 QLRELCRQWL RPEVHSKEQM LELLVLEQFL GALPPEIQAW VRGQQPGSPE BACU005936/1-586 ---------- ---------- ---------- ---------- --GREAGPT- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- --GREAGPT- 751 800 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- ---------- bmy_21434T0/1-1012 EAAVLVEGLQ HDPGQLLGWI TAHVLKQAVL PATQKAEESV GSSHPSGTVE BACU005936/1-586 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000049054/1-568 ---ATSG--- ---------- ---------- ---------- ---------- bmy_21434T0/1-1012 PLRAASGEGS KDAQMEGNTQ LSCSVKEEPD GYGQETVRVS PPGSGTRRDC BACU005936/1-586 ---AASG--- ---------- ---------- ---------- ---------- ENSTTRP00000001868/1-516 ---AASG--- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- ---------- bmy_21434T0/1-1012 RLQSGVPGRP EGRAGCLSAC CVPGTHRGLL PAAEEGPGCD TNASSSPALA BACU005936/1-586 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---PATIL-- ---------- bmy_21434T0/1-1012 QVGAPEPCLP CFLAPSSPPH PGRSHEGPAE QQEPTSVPFQ PPRIQEEWGL BACU005936/1-586 ---------- ---------- ---------- ---PATVP-- ---------- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---PATV--- ---------- 951 1000 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- ---------- bmy_21434T0/1-1012 LDPSQKEVYW DAMLQKYGTV VSLGGESESS REGRPGCPEA PPPALSKPYT BACU005936/1-586 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- ---------- bmy_21434T0/1-1012 CAQCGRTFDW KSVFVIHRRA HAGGPGAEKQ PVGPPRRALP GSRSYACEEC BACU005936/1-586 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000049054/1-568 ---------- ---------- ---------- ---------- -----RTTEA bmy_21434T0/1-1012 GRSFSWKSQL VIHRKGHAGQ RRHFCGDCGH SFDWKSQLVI HRKSHRPEAP BACU005936/1-586 ---------- ---------- ---------- ---------- -----KTAEP ENSTTRP00000001868/1-516 ---------- ---------- ---------- ---------- ----------