KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:59:36 2014  Check: 00 ..

 Name: ENSP00000376946/1-723     Len:    725  Check:  5994  Weight:  1.00
 Name: ENSBTAP00000049100/1-714  Len:    725  Check:  6458  Weight:  1.00
 Name: ENSTTRP00000002887/1-724  Len:    725  Check:  471  Weight:  1.00
 Name: bmy_12520T0/1-721         Len:    725  Check:  9811  Weight:  1.00
 Name: BACU016405/1-692          Len:    725  Check:  6090  Weight:  1.00

//


                          1                                                   50
ENSP00000376946/1-723     MLSSMAAAGS VKAALQVAEV LEAIVSCCVG PEGRQVLCTK PTGEVLLSRN 
ENSBTAP00000049100/1-714  ----MAAAGS VTVALHVAEV LETIVSGCLG PEGRQVLCTK PTGEVLLSRD 
ENSTTRP00000002887/1-724  LLRAMAAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD 
bmy_12520T0/1-721         ----MXAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD 
BACU016405/1-692          ----MAAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD 


                          51                                                 100
ENSP00000376946/1-723     GGRLLEALHL EHPIARMIVD CVSSHLKKTG DGAKTFIIFL CHLLRGLHAI 
ENSBTAP00000049100/1-714  GGCLLKALHL EHPVARVMVA CVSSHLRKTG DGAKTFIIFL CHLLRGLREI 
ENSTTRP00000002887/1-724  GGRLLKALHL EHPIARMMVA CVSSHLRKTG DGAKTFIIFL CHLLRELHAI 
bmy_12520T0/1-721         GGRLLKSLHL EHPIARMMVA CVSSHLRKTG DGAKTFIIFL CHLLRELYAI 
BACU016405/1-692          GGRLLKALHL EHPIA----- ---------- ---------- ----RELRAI 


                          101                                                150
ENSP00000376946/1-723     TDREKDPLMC ENIQTHGRHW KNCSRWKFIS QALLTFQTQI LDGIMDQYLS 
ENSBTAP00000049100/1-714  TDKEKDSFLF ENIQTCGRHW KNCCRWKFIS QAFLTFQTQI LDYVMDHYLS 
ENSTTRP00000002887/1-724  TDKEKDSFFS ENIQTHGRHW KKCCQWKFIS QALLTFQTQI LDYVMDHYLS 
bmy_12520T0/1-721         TDKEKDSFFS ENIQTHGRHW KNCCQWKFIS QALLTFQTQI LDYVMDHYLS 
BACU016405/1-692          TDKEKDSFFS ENIQTHGRHW KNCCRWKFIS QALLTFQTQV LDYVMDHYLS 


                          151                                                200
ENSP00000376946/1-723     RHFLSIFSSA -KERTLCRSS LELLLEAYFC GRVGRNNHKF ISQLMCDYFF 
ENSBTAP00000049100/1-714  RHFLSIFSSC TKERTLCRSS LEMLLGAYFC GRVGRNNQNL MSQLMCDYVF 
ENSTTRP00000002887/1-724  RHFLSIFSSS TKERPLCRSS LEMLLGAYFC GRVGRNNHNF VSQLMCDYFF 
bmy_12520T0/1-721         RHFLSIFSSS TKERPLCRSS LEMLLGAYFX GRVGRNNHNF VSQLMCDYFF 
BACU016405/1-692          RHFLSIFSSS TKERPLCRSS LEMLLRAYFC GRVGRNNHNF VSQLMCDYFF 


                          201                                                250
ENSP00000376946/1-723     KCMTCKSGI- GVFELVDDHF VELNVGVTGL PVSDSRIIAG LVLQKDFSVY 
ENSBTAP00000049100/1-714  NCTACESGFE EVLELVDDCF -ELKVGVTGL PVSDSRIIAG LVLQRDFSVY 
ENSTTRP00000002887/1-724  KCTACESGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY 
bmy_12520T0/1-721         KCTACQSGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY 
BACU016405/1-692          KCTACESGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY 


                          251                                                300
ENSP00000376946/1-723     RPADGDMRMV IVTETIQPLF STSGSEFILN SEAQFQTSQF WIMEKTKAIM 
ENSBTAP00000049100/1-714  CPADGDIRIV IVTETIQPLF SISGSEFTLN SEAQFQTSQF WITERTKAIV 
ENSTTRP00000002887/1-724  CPADGDIRIV IVIETIQPLF STFGSEFILN SEAQFQTSQF WITERTKAIM 
bmy_12520T0/1-721         CPADGDIRIV IVIETIQPLF STFGSEFILN SEAQFRTSQF WITERTKAIM 
BACU016405/1-692          CPADGDIRIV IVIETIQPPF STFGSEFILN SEAQFRTSQF WITERTKAIM 


                          301                                                350
ENSP00000376946/1-723     KHLHSQNVKL LISSVKQPDL VSYYAGVNGI SVVECLSSEE VSLIRRIIGL 
ENSBTAP00000049100/1-714  KHLQNQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL 
ENSTTRP00000002887/1-724  KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVTGX 
bmy_12520T0/1-721         KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL 
BACU016405/1-692          KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL 


                          351                                                400
ENSP00000376946/1-723     SPFVPPQAFS QCEIPNTALV KFCKPLILRS KRYVHLGLIS TCAFIPHSIV 
ENSBTAP00000049100/1-714  APFVLPEASS QYELSHTALA KFCKPLILRS KRFVHLGLMS TCSFAPHCIA 
ENSTTRP00000002887/1-724  XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVHLGLIS TCSFTPHCIV 
bmy_12520T0/1-721         APFVLPQASS QYELSNTAVV KFCKPFILRS KRYVHLGLIS TCSFTPHCIV 
BACU016405/1-692          APLVLPQASS QYELSNTAMV KFCKPFILRS KRYVHLGLIS TCSFTPHCIV 


                          401                                                450
ENSP00000376946/1-723     LCGPVHGLIE QHEDALHGAL KMLRQLFKDL DLNYMTQTND QNGTSSLFIY 
ENSBTAP00000049100/1-714  LCAPVQGLVE QHENALHGAF KMLRQAFKDL DLNCVTQTSD QSCTSGPCIY 
ENSTTRP00000002887/1-724  LCGP-QGLVE QHEVALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY 
bmy_12520T0/1-721         LCGPVQGLVE QHQDALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY 
BACU016405/1-692          LCGPVQGLVE QHQDALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY 


                          451                                                500
ENSP00000376946/1-723     KNSGESYQAP DPGNGSIQRP YQDTVAENKD ALEKTQTYLK VHSNLVIPDV 
ENSBTAP00000049100/1-714  KNSRESNELP KIVNSSIQRS YQDTVVKKKG ELAKTQTNLK VCSNLIVPSV 
ENSTTRP00000002887/1-724  KNSREINDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK AYSNLVVPSV 
bmy_12520T0/1-721         KNSRESNDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK TYSNLVVPSV 
BACU016405/1-692          KNSRESNDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK AYSNLVVPSV 


                          501                                                550
ENSP00000376946/1-723     ELETYIPYST PTLTPTDTFQ TVETLTCLSL ERNRLTDYYE PLLKNNSTAY 
ENSBTAP00000049100/1-714  KLEQNVLCST PKVAVTDSYQ TDETLRCSSP NKGRIMDDQE PFIESNSANS 
ENSTTRP00000002887/1-724  ELETNILCST PTVTLTDTYQ TDATLRCFSP DKARIMDDHE PFIESNSANS 
bmy_12520T0/1-721         ELETNILCST PTVTLTDTYQ TDATLRCFSP NKARIMDDHE PFIESNSANS 
BACU016405/1-692          ELETNILCST PTVTLTATYQ TDATLRCFSP NKARIMDDHE PFIESNSANS 


                          551                                                600
ENSP00000376946/1-723     STRGNRIEIS YENLQVTNIT RKGSMLPVSC KLPNMGTSQS YLSSSMPAGC 
ENSBTAP00000049100/1-714  KPENTRRGIS ------MKIT GKGQHLPLRY KSLETCTSQS YYSSSIPAGC 
ENSTTRP00000002887/1-724  ATENTRREIS YENLQVTKNA RKGSILPVRY KSLEMCTSQS YCFSSVPAGC 
bmy_12520T0/1-721         TTENTRREIS YENLQVTKNA RKGSILAVRY KSLEMCTSQS YCFSSVPAGC 
BACU016405/1-692          TTENTRREIS YENLQVTKNG RKGSILPVRD KSLEMCTSQS YCFSSVPAGC 


                          601                                                650
ENSP00000376946/1-723     VLPVGGNFEI LLHYYLLNYA KKCHQSEETM VSMIIANALL GIPKVLYKSK 
ENSBTAP00000049100/1-714  VLPVGGNFEI LLHYYLLNYA KKCQQSEQTM VSRIIANAIL GVPKILYKSK 
ENSTTRP00000002887/1-724  VLPVGGNFEI LLHYYLLSYA KKCQQSEETM VSMIIANALL GVPKILYKSK 
bmy_12520T0/1-721         VLPVGGNFEI LLHYYLLNYA KKCRQSEETM VSMIIANALL GIPKILYKSK 
BACU016405/1-692          VLPVGGNFEI LLHYYLLNYA KKCRQSEETM VSMIIANALL GVPKILYKSK 


                          651                                                700
ENSP00000376946/1-723     TGKYSFPHTY IRAVHALQTN QPLVSSQTGL ESVMGKYQLL TSVLQCLTKI 
ENSBTAP00000049100/1-714  KGNYSFPQVY VRALQALQTN QPMISNQTGL ESVAGKYQLL TSVLQCLTNI 
ENSTTRP00000002887/1-724  KGNYSFPQIY IRALHALQTN QPMISNQTGL ESVAGKYQLL TSVLQCLRNI 
bmy_12520T0/1-721         KGNYSFPQIY IRALHALQTN QPMISDQTGL ESVAGKYQLL TSVLQCLTNI 
BACU016405/1-692          KGNYSFPQIY IRALHALQTN QPMISNQTGL ESVAAKYRLL TSVLQCLTNI 


                          701                                                750
ENSP00000376946/1-723     LTIDMVITVK RHPQKVHNQD SEDEL 
ENSBTAP00000049100/1-714  LTVDLVINIK RQPQEVYDQD SEEEL 
ENSTTRP00000002887/1-724  LTIDLVINIK RQPQEIYDQD SEEEL 
bmy_12520T0/1-721         LTIDLVINIK RQPQEIYDQD SEEEL 
BACU016405/1-692          LTIDLVINIK RQPQEIYDQD SDEEL