KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:59:36 2014 Check: 00 ..
Name: ENSP00000376946/1-723 Len: 725 Check: 5994 Weight: 1.00
Name: ENSBTAP00000049100/1-714 Len: 725 Check: 6458 Weight: 1.00
Name: ENSTTRP00000002887/1-724 Len: 725 Check: 471 Weight: 1.00
Name: bmy_12520T0/1-721 Len: 725 Check: 9811 Weight: 1.00
Name: BACU016405/1-692 Len: 725 Check: 6090 Weight: 1.00
//
1 50
ENSP00000376946/1-723 MLSSMAAAGS VKAALQVAEV LEAIVSCCVG PEGRQVLCTK PTGEVLLSRN
ENSBTAP00000049100/1-714 ----MAAAGS VTVALHVAEV LETIVSGCLG PEGRQVLCTK PTGEVLLSRD
ENSTTRP00000002887/1-724 LLRAMAAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD
bmy_12520T0/1-721 ----MXAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD
BACU016405/1-692 ----MAAAGS VRAALQVAEV LETVVSCCLG PEGRQVLCTK PTGEVLLSRD
51 100
ENSP00000376946/1-723 GGRLLEALHL EHPIARMIVD CVSSHLKKTG DGAKTFIIFL CHLLRGLHAI
ENSBTAP00000049100/1-714 GGCLLKALHL EHPVARVMVA CVSSHLRKTG DGAKTFIIFL CHLLRGLREI
ENSTTRP00000002887/1-724 GGRLLKALHL EHPIARMMVA CVSSHLRKTG DGAKTFIIFL CHLLRELHAI
bmy_12520T0/1-721 GGRLLKSLHL EHPIARMMVA CVSSHLRKTG DGAKTFIIFL CHLLRELYAI
BACU016405/1-692 GGRLLKALHL EHPIA----- ---------- ---------- ----RELRAI
101 150
ENSP00000376946/1-723 TDREKDPLMC ENIQTHGRHW KNCSRWKFIS QALLTFQTQI LDGIMDQYLS
ENSBTAP00000049100/1-714 TDKEKDSFLF ENIQTCGRHW KNCCRWKFIS QAFLTFQTQI LDYVMDHYLS
ENSTTRP00000002887/1-724 TDKEKDSFFS ENIQTHGRHW KKCCQWKFIS QALLTFQTQI LDYVMDHYLS
bmy_12520T0/1-721 TDKEKDSFFS ENIQTHGRHW KNCCQWKFIS QALLTFQTQI LDYVMDHYLS
BACU016405/1-692 TDKEKDSFFS ENIQTHGRHW KNCCRWKFIS QALLTFQTQV LDYVMDHYLS
151 200
ENSP00000376946/1-723 RHFLSIFSSA -KERTLCRSS LELLLEAYFC GRVGRNNHKF ISQLMCDYFF
ENSBTAP00000049100/1-714 RHFLSIFSSC TKERTLCRSS LEMLLGAYFC GRVGRNNQNL MSQLMCDYVF
ENSTTRP00000002887/1-724 RHFLSIFSSS TKERPLCRSS LEMLLGAYFC GRVGRNNHNF VSQLMCDYFF
bmy_12520T0/1-721 RHFLSIFSSS TKERPLCRSS LEMLLGAYFX GRVGRNNHNF VSQLMCDYFF
BACU016405/1-692 RHFLSIFSSS TKERPLCRSS LEMLLRAYFC GRVGRNNHNF VSQLMCDYFF
201 250
ENSP00000376946/1-723 KCMTCKSGI- GVFELVDDHF VELNVGVTGL PVSDSRIIAG LVLQKDFSVY
ENSBTAP00000049100/1-714 NCTACESGFE EVLELVDDCF -ELKVGVTGL PVSDSRIIAG LVLQRDFSVY
ENSTTRP00000002887/1-724 KCTACESGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY
bmy_12520T0/1-721 KCTACQSGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY
BACU016405/1-692 KCTACESGFE EVLELVDDCF VELKVGVTGL PVSDSRIIAG LVLPRDFSVY
251 300
ENSP00000376946/1-723 RPADGDMRMV IVTETIQPLF STSGSEFILN SEAQFQTSQF WIMEKTKAIM
ENSBTAP00000049100/1-714 CPADGDIRIV IVTETIQPLF SISGSEFTLN SEAQFQTSQF WITERTKAIV
ENSTTRP00000002887/1-724 CPADGDIRIV IVIETIQPLF STFGSEFILN SEAQFQTSQF WITERTKAIM
bmy_12520T0/1-721 CPADGDIRIV IVIETIQPLF STFGSEFILN SEAQFRTSQF WITERTKAIM
BACU016405/1-692 CPADGDIRIV IVIETIQPPF STFGSEFILN SEAQFRTSQF WITERTKAIM
301 350
ENSP00000376946/1-723 KHLHSQNVKL LISSVKQPDL VSYYAGVNGI SVVECLSSEE VSLIRRIIGL
ENSBTAP00000049100/1-714 KHLQNQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL
ENSTTRP00000002887/1-724 KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVTGX
bmy_12520T0/1-721 KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL
BACU016405/1-692 KYLQKQNVKL LLSTVKQPDL VIYCAGLNGI SVVECLSSEE LSLIQRVIGL
351 400
ENSP00000376946/1-723 SPFVPPQAFS QCEIPNTALV KFCKPLILRS KRYVHLGLIS TCAFIPHSIV
ENSBTAP00000049100/1-714 APFVLPEASS QYELSHTALA KFCKPLILRS KRFVHLGLMS TCSFAPHCIA
ENSTTRP00000002887/1-724 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVHLGLIS TCSFTPHCIV
bmy_12520T0/1-721 APFVLPQASS QYELSNTAVV KFCKPFILRS KRYVHLGLIS TCSFTPHCIV
BACU016405/1-692 APLVLPQASS QYELSNTAMV KFCKPFILRS KRYVHLGLIS TCSFTPHCIV
401 450
ENSP00000376946/1-723 LCGPVHGLIE QHEDALHGAL KMLRQLFKDL DLNYMTQTND QNGTSSLFIY
ENSBTAP00000049100/1-714 LCAPVQGLVE QHENALHGAF KMLRQAFKDL DLNCVTQTSD QSCTSGPCIY
ENSTTRP00000002887/1-724 LCGP-QGLVE QHEVALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY
bmy_12520T0/1-721 LCGPVQGLVE QHQDALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY
BACU016405/1-692 LCGPVQGLVE QHQDALHGAF KMLRQLFKDL DLNYVTQASD QNCTSSPLIY
451 500
ENSP00000376946/1-723 KNSGESYQAP DPGNGSIQRP YQDTVAENKD ALEKTQTYLK VHSNLVIPDV
ENSBTAP00000049100/1-714 KNSRESNELP KIVNSSIQRS YQDTVVKKKG ELAKTQTNLK VCSNLIVPSV
ENSTTRP00000002887/1-724 KNSREINDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK AYSNLVVPSV
bmy_12520T0/1-721 KNSRESNDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK TYSNLVVPSV
BACU016405/1-692 KNSRESNDLP EIVNGSIQRP YQDTVVKNKD ELAKTQTYLK AYSNLVVPSV
501 550
ENSP00000376946/1-723 ELETYIPYST PTLTPTDTFQ TVETLTCLSL ERNRLTDYYE PLLKNNSTAY
ENSBTAP00000049100/1-714 KLEQNVLCST PKVAVTDSYQ TDETLRCSSP NKGRIMDDQE PFIESNSANS
ENSTTRP00000002887/1-724 ELETNILCST PTVTLTDTYQ TDATLRCFSP DKARIMDDHE PFIESNSANS
bmy_12520T0/1-721 ELETNILCST PTVTLTDTYQ TDATLRCFSP NKARIMDDHE PFIESNSANS
BACU016405/1-692 ELETNILCST PTVTLTATYQ TDATLRCFSP NKARIMDDHE PFIESNSANS
551 600
ENSP00000376946/1-723 STRGNRIEIS YENLQVTNIT RKGSMLPVSC KLPNMGTSQS YLSSSMPAGC
ENSBTAP00000049100/1-714 KPENTRRGIS ------MKIT GKGQHLPLRY KSLETCTSQS YYSSSIPAGC
ENSTTRP00000002887/1-724 ATENTRREIS YENLQVTKNA RKGSILPVRY KSLEMCTSQS YCFSSVPAGC
bmy_12520T0/1-721 TTENTRREIS YENLQVTKNA RKGSILAVRY KSLEMCTSQS YCFSSVPAGC
BACU016405/1-692 TTENTRREIS YENLQVTKNG RKGSILPVRD KSLEMCTSQS YCFSSVPAGC
601 650
ENSP00000376946/1-723 VLPVGGNFEI LLHYYLLNYA KKCHQSEETM VSMIIANALL GIPKVLYKSK
ENSBTAP00000049100/1-714 VLPVGGNFEI LLHYYLLNYA KKCQQSEQTM VSRIIANAIL GVPKILYKSK
ENSTTRP00000002887/1-724 VLPVGGNFEI LLHYYLLSYA KKCQQSEETM VSMIIANALL GVPKILYKSK
bmy_12520T0/1-721 VLPVGGNFEI LLHYYLLNYA KKCRQSEETM VSMIIANALL GIPKILYKSK
BACU016405/1-692 VLPVGGNFEI LLHYYLLNYA KKCRQSEETM VSMIIANALL GVPKILYKSK
651 700
ENSP00000376946/1-723 TGKYSFPHTY IRAVHALQTN QPLVSSQTGL ESVMGKYQLL TSVLQCLTKI
ENSBTAP00000049100/1-714 KGNYSFPQVY VRALQALQTN QPMISNQTGL ESVAGKYQLL TSVLQCLTNI
ENSTTRP00000002887/1-724 KGNYSFPQIY IRALHALQTN QPMISNQTGL ESVAGKYQLL TSVLQCLRNI
bmy_12520T0/1-721 KGNYSFPQIY IRALHALQTN QPMISDQTGL ESVAGKYQLL TSVLQCLTNI
BACU016405/1-692 KGNYSFPQIY IRALHALQTN QPMISNQTGL ESVAAKYRLL TSVLQCLTNI
701 750
ENSP00000376946/1-723 LTIDMVITVK RHPQKVHNQD SEDEL
ENSBTAP00000049100/1-714 LTVDLVINIK RQPQEVYDQD SEEEL
ENSTTRP00000002887/1-724 LTIDLVINIK RQPQEIYDQD SEEEL
bmy_12520T0/1-721 LTIDLVINIK RQPQEIYDQD SEEEL
BACU016405/1-692 LTIDLVINIK RQPQEIYDQD SDEEL