KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:37 2014 Check: 00 .. Name: bmy_05933T0/1-507 Len: 718 Check: 7202 Weight: 1.00 Name: ENSBTAP00000049121/1-577 Len: 718 Check: 2977 Weight: 1.00 Name: ENSP00000390179/1-609 Len: 718 Check: 7261 Weight: 1.00 Name: BACU001426/1-444 Len: 718 Check: 6 Weight: 1.00 Name: ENSTTRP00000013074/1-608 Len: 718 Check: 8384 Weight: 1.00 // 1 50 bmy_05933T0/1-507 GRTQRSGYPH LRPRSPVAQA RCRGVPRGPL GNVVLSAKRP RRKAFWGSWS ENSBTAP00000049121/1-577 ---------- ---------- ---------- ---------- ---------- ENSP00000390179/1-609 ---------- ---------- ---------- ---------- ---------- BACU001426/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013074/1-608 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05933T0/1-507 AGSEGKAESL VQVPAAGVYP AELGVPRASV PAPLRPAGDS GRRRRWSRVV ENSBTAP00000049121/1-577 ---------- ---------- ---------- ---------- --------MA ENSP00000390179/1-609 ---------- ---------- ---------- ---------- --------MA BACU001426/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013074/1-608 ---------- ---------- ---------- ---------- --------MA 101 150 bmy_05933T0/1-507 GRVSRASGAG RLNFCGVIKD FVLQKRKLKK EGRMAVGLCK AMSQKFHIIF ENSBTAP00000049121/1-577 GLIS----EG FVQRCHVG-- ------ELQE LG-------- ---------- ENSP00000390179/1-609 VGLCKAMSQG LVTFRDVALD FSQEEWEWLK PSQKDLYRDV MLENYRNLVW BACU001426/1-444 ---------- ---------- ---------- ---------- MLENYRNLVW ENSTTRP00000013074/1-608 VGLCKSMSQG LVTFRDVALN FSQEEWEWLD SSQKDLYRDV MLENYRNLVW 151 200 bmy_05933T0/1-507 QNFGTSERVT RLSISKPNMI SLLEQGKNPC MVEREMSDGQ YAEGDSLYEI ENSBTAP00000049121/1-577 ---------- -LSISKPNMI SLLEQGKEPW MVEREMSDGQ HADWESWYEI ENSP00000390179/1-609 LG-------- -LSISKPNMI SLLEQGKEPW MVERKMSQGH CADWESWCEI BACU001426/1-444 L--------- ---------- ---------- ---------- ---------- ENSTTRP00000013074/1-608 LG-------- -LSVSKPNMI SLLEQGKDPC MVEREMSDGQ YAEWDSLYEI 201 250 bmy_05933T0/1-507 KALSPKWYID EEEISQGMIM ERLTSYGLES SSFREAWKYE GEFEQHQGNQ ENSBTAP00000049121/1-577 KALSPKWYTD EEEISQGVIT KRLTSYSLEF SSFREAWKYE AEFERHQGNQ ENSP00000390179/1-609 EELSPKWFID EDEISQEMVM ERLASHGLEC SSFREAWKYK GEFELHQGNA BACU001426/1-444 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013074/1-608 KALSPKWYID EEEISQGMIM ERLTSYGLES SSFREAWKYK GEFEQHQGNQ 251 300 bmy_05933T0/1-507 ERHFRQVTTL KEISAMKRDN EYNNSERNVL LNSVLLTQQR VPTVEQ---- ENSBTAP00000049121/1-577 ERHFRQVATL KEISAVKKDS EYNNSERNIL LKSVLLTQQR VPPVEQVHKF ENSP00000390179/1-609 ERHFMQVTAV KEISTGKRDN EFSNSGRSIP LKSVFLTQQK VPTIQQVHKF BACU001426/1-444 ---------- ---------- ---------- ---VLLTQRR VPTVEQVHKF ENSTTRP00000013074/1-608 ESHFRQVTTL KEISAMKRDN EYNNSEINVL LNSVLLTQQR VPTVEQVHKF 301 350 bmy_05933T0/1-507 ---------- ---------- ---------- --------FF RKNLILPPYD ENSBTAP00000049121/1-577 GIFNKMFPPN SVLIEHKRLH AEKESLIGNE CEEFNQSTYL SKDVEISPGE ENSP00000390179/1-609 DIYDKLFPQN SVIIEYKRLH AEKESLIGNE CEEFNQSTYL SKDIGIPPGE BACU001426/1-444 DIYDKMFPPN SVLTEHKRLH AEKESLIGNE CEEFNQSTYL SKDAEIPPGE ENSTTRP00000013074/1-608 DIYDKMFPPN SVLTEHKGLH AEKESLIGNE CEEFNQNTYL SKDAEIPPGE 351 400 bmy_05933T0/1-507 YP-------- -ISQHHLQII HLSHLLGHC- -GPIQSGDVA ASVASVSQRE ENSBTAP00000049121/1-577 KSYESNDFSN LLSFHSLLTQ HQATHFGKSP RGYDEYGNAF SCYSYFSQPQ ENSP00000390179/1-609 KPYESHDFSK LLSFHSLFTQ HQTTHFGKLP HGYDECGDAF SCYSFFTQPQ BACU001426/1-444 KRYKSNDFSD LLSFHSLLTQ HHTTHLGKLS HGYVECGAAF SCYSFFTQPQ ENSTTRP00000013074/1-608 KHYESNDFSD LLSFHSLLTQ HHTTHLGKLS HGYVECGAAF SCYSFFTQPQ 401 450 bmy_05933T0/1-507 A--------- ----GKCVSV ---------- ----RLWGAK RCDLKLQRGQ ENSBTAP00000049121/1-577 RIHNREKPYA CNDCGKGFSH DFFLSEHQRT HIGEKPYECK ECNKAFRQSA ENSP00000390179/1-609 RIHSGEKPYA CNDCGKAFSH DFFLSEHQRT HIGEKPYECK ECNKAFRQSA BACU001426/1-444 RIHSREKPYA CNDCGKAFSH DFFLSEHQRA HTGEKPYECK ECNKAFRQSA ENSTTRP00000013074/1-608 RIHSREKPYA CNDCGKAFSH DFFLSEHQRA HTGEKPYECK ECNKAFRQSA 451 500 bmy_05933T0/1-507 TVRAEEVLFL GLCP------ GENV--YVRF VGVRSSATED PPKDLPPCTQ ENSBTAP00000049121/1-577 HLAQHQRIHT GEKPFACNEC GKAFSRYAFL VEHQRIHTGE KPYECKECNK ENSP00000390179/1-609 HLAQHQRIHT GEKPFACNEC GKAFSRYAFL VEHQRIHTGE KPYECKECNK BACU001426/1-444 HLAQHQRIHT GEKPFVCNEC GKAFSRYAFL VEHQRIHTGE KPYECKECNK ENSTTRP00000013074/1-608 HLAQHQRIHT GEKPFACNEC GKAFSRYAFL VEHQRIHTGE KPYECKECNK 501 550 bmy_05933T0/1-507 QYCPPFLTPQ NLYGHILRGI DADILHQCG- -----IELIP HTTEAVLDWS ENSBTAP00000049121/1-577 AFRQS--AHL NQHQRIHTGE KPYECNQCGK AFSRRIALTL HQRIHTGEKP ENSP00000390179/1-609 AFRQS--AHL NQHQRIHTGE KPYECNQCGK AFSRRIALTL HQRIHTGEKP BACU001426/1-444 AFRQS--AHL NQHQRIHTGE KPYECNQCGK AFSRRIALTL HQRIHTGEKP ENSTTRP00000013074/1-608 AFRQS--AHL NQHQRIHTGE KPYECNQCGK AFSRRIXXXX XXXXXXGEKP 551 600 bmy_05933T0/1-507 F--------- ---------- ---------- ---------- ---------- ENSBTAP00000049121/1-577 FKCNECGKTF GYRSHLNQHQ RIHTGEKPYE CIKCGKFFRT DSQLNRHHRI ENSP00000390179/1-609 FKCSECGKTF GYRSHLNQHQ RIHTGEKPYE CIKCGKFFRT DSQLNRHHRI BACU001426/1-444 FKCNECGKTF GYRSHLNQHQ RIHTGEKPYE CIKCGKFFRT DSQLNRHHRI ENSTTRP00000013074/1-608 F-CNECGKTF GYRSHLNQHQ RIHTGEKPYE CIKCGKFFRT DSQLNRHHRI 601 650 bmy_05933T0/1-507 ---------- --PQPFAELL I--------- ---------- NKIESPGGWV ENSBTAP00000049121/1-577 HTGERPFECN KCGKAFSDAL VLIHHKRSHA GEKPYECNKC GKAFSCGSYL ENSP00000390179/1-609 HTGERPFECS KCGKAFSDAL VLIHHKRSHA GEKPYECNKC GKAFSCGSYL BACU001426/1-444 HTGERPFECS KCGKAFSDAL VLIHHKRSHA GEKPYECNKC GKAFSCGSYL ENSTTRP00000013074/1-608 HTGERPFECS KCGKAFSDAL VLIHHKRSHA GEKPYECNKC GKAFSCGSYL 651 700 bmy_05933T0/1-507 EGVLSTNLGN SS-----CEL AYEQLQN--- ---------- ---------- ENSBTAP00000049121/1-577 NQHQRIHTGE KPYECNECGK AFHQVLSLRL HQRIHAGEKP YNCNECGNNF ENSP00000390179/1-609 NQHQRIHTGE KPYECSECGK AFHQILSLRL HQRIHAGEKP YKCNECGNNF BACU001426/1-444 NQHQRIHTGE KPYECNECGK AFHQILSLRL HQRIHAGEKP YNCNECGNNF ENSTTRP00000013074/1-608 NQHQRIHTGE KPYECNECGK AFHQILSLRL HQRIHAGEKP YNCNECGNNF 701 750 bmy_05933T0/1-507 SEPDSTTSH- -------- ENSBTAP00000049121/1-577 SRASTLRRHQ KIHNRKIL ENSP00000390179/1-609 SCVSALRRHQ RIHNRETL BACU001426/1-444 SCASALRRHQ KIHNRETL ENSTTRP00000013074/1-608 SCASALRRHE KIHNREAL