KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:38 2014 Check: 00 .. Name: bmy_13694T0/1-442 Len: 509 Check: 6679 Weight: 1.00 Name: BACU001359/1-388 Len: 509 Check: 2645 Weight: 1.00 Name: ENSP00000359484/1-467 Len: 509 Check: 3320 Weight: 1.00 Name: ENSTTRP00000006685/1-464 Len: 509 Check: 6964 Weight: 1.00 Name: ENSBTAP00000049158/1-471 Len: 509 Check: 8278 Weight: 1.00 // 1 50 bmy_13694T0/1-442 ---------- ---------- ---------- ---MDSEEE- ---------- BACU001359/1-388 ---------- ---------- ---------- ---------- ---------- ENSP00000359484/1-467 MATRSCREKA QKLNEQHQLI LSKLLREEDN KYCADCEAKG PRWASWNIGV ENSTTRP00000006685/1-464 -------RKA HKLNEQHQLI LSKLLRDEDN KY-SDCEAKG PRWASWNIGV ENSBTAP00000049158/1-471 MATRSCREKA QKLNEQHQLI LSKLLREEDN KYCADCEAKG PRWASWNIGV 51 100 bmy_13694T0/1-442 --------VS REQGSARARC -----GQWRG QRLSGVCNQT TGSFQIYTWY BACU001359/1-388 ---------- ---------- ---------- ---------- MGNTKARLLY ENSP00000359484/1-467 FICIRCAGIH RNLGVHISRV KSVNLDQWTA EQIQ--CMQD MGNTKARLLY ENSTTRP00000006685/1-464 FICIRCAGIH RNLGVHISRV KSVNLDQWTP EQIQ--CMQD MGNTKARLLY ENSBTAP00000049158/1-471 FICIRCAGIH RNLGVHISRV KSVNLDQWTP EQIQ--CMQD MGNTKARLLY 101 150 bmy_13694T0/1-442 HSKAFGMGQE EDTKYCFKYF V--------Y LYSFGFLLSG VLCASLSLFL BACU001359/1-388 EANLPENFRR PQTDQAVEFF IRDKYEKKKY YDKNAIAITN ISSSDAPLQP ENSP00000359484/1-467 EANLPENFRR PQTDQAVEFF IRDKYEKKKY YDKNAIAITN ISSSDAPLQP ENSTTRP00000006685/1-464 EANLPENFRR PQTDQAVEFF IRDKYEKKKY YDKNAIAITN ISSSDAPLQP ENSBTAP00000049158/1-471 EANLPENFRR PQTDQAVEFF IRDKYEKKKY YDKNAIAITN IASSDAPLQP 151 200 bmy_13694T0/1-442 VVCQLSL-CR LPQAVLVLWR SRSVCVHRLL FLHVDEGAAP PAP-AAERGA BACU001359/1-388 LVSSPSLQAA VERNKLEKEK EKKKEEKK-- --REKEPEKP AKPLTTEKSW ENSP00000359484/1-467 LVSSPSLQAA VDKNKLEKEK EKKKEEKK-- --REKEPEKP AKPLTAEK-- ENSTTRP00000006685/1-464 LVSSPSLQAA VEKNKLEKEK EKKKEEKK-- --REKEPEKP AKPLTTEK-- ENSBTAP00000049158/1-471 LVSSPSLQAA VEKNKLEKEK EKKKEEKK-- --KEKEPEKP TKPLTTEK-- 201 250 bmy_13694T0/1-442 RAHWEVLCVR RRPLPPWRRC VAWPLAPQPL EGEVSIGLEY PVLLKYFISR BACU001359/1-388 SGRKQLRAEC DETACKRCRG EAPRLPTRSS AS-------- ---------- ENSP00000359484/1-467 ------LQKK DQQLEP-KKS TSPKKAAEPT VDLLGL---- ---------- ENSTTRP00000006685/1-464 -----LQKKE DQQLEP-KKS TSPKKAAEPT VDLLGL---- ---------- ENSBTAP00000049158/1-471 -----LQKKE DQQLEP-KKS TSPKKAAEPT VDLLGL---- ---------- 251 300 bmy_13694T0/1-442 SYYLMYYASD GPAEVPVTNG NTATGQALND DLDIFGPMIS NPLPATVLPP BACU001359/1-388 ---------D GPAEMPVTNG NTATGQALND DLDIFGPMIS NPLPATVLPP ENSP00000359484/1-467 ---------D GPAVAPVTNG NTTV-PPLND DLDIFGPMIS NPLPATVMPP ENSTTRP00000006685/1-464 ---------D GPAEVPVTNG NTATGQALND DLDIFGPMIS NPLPATVLPP ENSBTAP00000049158/1-471 ---------D GPAEAPVTNG SAVVGPALND DLDIFGPMIS NPLPATVMPP 301 350 bmy_13694T0/1-442 AQGTSSVPAA AALSTVTSGD LDLFTEQATK SEEVAKKQLS RDSILSLYGT BACU001359/1-388 AQGTSSVPPA AALSAVTSGD LDLFTEQATK SEEAAKKQLS RDSILSLYGT ENSP00000359484/1-467 AQGTPSAPAA ATLSTVTSGD LDLFTEQTTK SEEVAKKQLS KDSILSLYGT ENSTTRP00000006685/1-464 AQGTSSVPAV AALSAVTSGD LDLFTEQTTK SEEVAKKQLS KDSILSLYGT ENSBTAP00000049158/1-471 AQGTSSAPAA ATLSAVTSGD LDLFTEQAAK SEEVAKKQLS KDSILSLYGA 351 400 bmy_13694T0/1-442 GAIQQHSAPG VFMGPTNIPF PSQAPAAFQG FPSMGGPVPA APGLAGSVMG BACU001359/1-388 GTVQQHGTPG VFMGPTNIPF PSQAPAAFQG FPSMGGPVPA APGLAGSVMG ENSP00000359484/1-467 GTIQQQSTPG VFMGPTNIPF TSQAPAAFQG FPSMGVPVPA APGLIGNVMG ENSTTRP00000006685/1-464 GTTQQQSAPG VFMGPTNIPF PSQAPAAFQG FPSMGGPVPA APGLAGSVMG ENSBTAP00000049158/1-471 GAIQQQGAPG VFMGPTNLPF TSQAPAAFPG FPSMGVPVPA APGLVGSSLG 401 450 bmy_13694T0/1-442 PSAGVMVGVP LPNGFMGNAQ TGVMPLPQSV VGPPGGMVGH VGAAQSKFGL BACU001359/1-388 PSAGVMVGVP LPNGFMGNAQ TGVMPLPQSV VGPPGGMVGH VGAAQRKFGL ENSP00000359484/1-467 QSPSMMVGMP MPNGFMGNAQ TGVMPLPQNV VGPQGGMVGQ MGAPQSKFGL ENSTTRP00000006685/1-464 PSAGVMVGVP LPNGFMGNAQ TGVMPLPQSV VGPPGGMVGH AGAAQSKFGL ENSBTAP00000049158/1-471 PSAGMMVGVP VPNGFMGSAQ TAVMPLAQGV VGPP-GMVAH LGAAQGKFGL 451 500 bmy_13694T0/1-442 PPAQQPPWNL SQVNQQMAGL SLGSASPAAG FSQPPSTTAG AAGWSGGSSG BACU001359/1-388 PPSQQPPWSL SQVNQQMAGL SLGSASPAAG FSQPPGTTAG AAGWSGASSG ENSP00000359484/1-467 PQAQQPQWSL SQMNQQMAGM SISSATPTAG FGQPSSTT-- -AGWSGSSSG ENSTTRP00000006685/1-464 PPAQQPPWNL SQVNQQMAGL SLGGASPAAG FSQPPSTTAG AAGWSGASSG ENSBTAP00000049158/1-471 QPAPQSPWNL PQVNQQMAGL SLGGAASAAG FGQPPSTSAG AAGWPGGSSG 501 550 bmy_13694T0/1-442 QTLSTQLWK BACU001359/1-388 QTLSTQLWK ENSP00000359484/1-467 QTLSTQLWK ENSTTRP00000006685/1-464 QTLSTQLWK ENSBTAP00000049158/1-471 QTLSTQLWK