KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:39 2014 Check: 00 .. Name: bmy_19963T0/1-286 Len: 308 Check: 8386 Weight: 1.00 Name: ENSP00000368391/1-224 Len: 308 Check: 641 Weight: 1.00 Name: ENSBTAP00000049200/1-247 Len: 308 Check: 9410 Weight: 1.00 Name: ENSTTRP00000000080/1-226 Len: 308 Check: 3615 Weight: 1.00 Name: BACU018324/1-222 Len: 308 Check: 5495 Weight: 1.00 // 1 50 bmy_19963T0/1-286 MRCGSNLIGF ILAGAVEEPK GEFYLAF-IP YRL------F FFFLNLHQ-- ENSP00000368391/1-224 ---------- -----MDCRE MDLYEDYQSP FDFDAGVNKS YLYLSPSG-- ENSBTAP00000049200/1-247 ---------- -----MDGRE MDFYEDYESP FDFNTGVNKN YLYLSPSG-- ENSTTRP00000000080/1-226 ---------- -----MDSRE MDFYEDYQSP FDFNTGVNRN YLYLSPXXSW BACU018324/1-222 ---------- -----MDGRE MDFYEDYQSP FDFNTGVNRN YLYLSPSG-- 51 100 bmy_19963T0/1-286 ---------- ---GLLRTDP VPEEGEDVAA TISATETLSE EEQEELRREL ENSP00000368391/1-224 NSSPPGSPTL QKFGLLRTDP VPEEGEDVAA TISATETLSE EEQEELRREL ENSBTAP00000049200/1-247 NTSPPGSPTL QKFGLLRTDP VPEEGEDVAA TIGATETLSE EEREELRREL ENSTTRP00000000080/1-226 NTSPPGSPTL QKFGLLRTDP VPEEGEDVVA TISATETLSE EEREELRREL BACU018324/1-222 NTSPPGSPTL QKFGLLRTDP VPEEGEDVAA TISATETLSE EEREELRREL 101 150 bmy_19963T0/1-286 AKVEEEIQTL SQVLAAKEKH LTEIKRKLGI NSLQELKQNI AKGWQDVTAT ENSP00000368391/1-224 AKVEEEIQTL SQVLAAKEKH LAEIKRKLGI NSLQELKQNI AKGWQDVTAT ENSBTAP00000049200/1-247 AKVEEEIQTL SQVLAAKEKH LAEIKRKLGI NSLQELKQNI AKGWQDVTAT ENSTTRP00000000080/1-226 AKVEEEIQTL SQVLAAKEKH LTEIKRKLGI NSLQELKQNI AKGWQDVTAT BACU018324/1-222 AKVEEEIQTL SQVLAAKEKH LTEIKRKLGI NSLQELKQNI AKGWQDVTAT 151 200 bmy_19963T0/1-286 SAYKKTSETL SQAGQKASAA FSSVGSVITK KLEDVKYSFL ITPDCKPFHI ENSP00000368391/1-224 SAYKKTSETL SQAGQKASAA FSSVGSVITK KLEDVK---- ---------- ENSBTAP00000049200/1-247 SAYKKTSETL SQAGQKASAA FSSVGSVITK KLEDVK---- ----LQAFSH ENSTTRP00000000080/1-226 SAYKKTSETL SQAGQKASAA FSSVGSVITK KLEDVK---- ---------- BACU018324/1-222 SAYKKTSETL SQAGQKASAA FSSVGSVITK KLEDVK---- ---------- 201 250 bmy_19963T0/1-286 PLETVLVQQQ CGFVLLKFSI LYLNFSDSGD DVNSPTFKSF EEKVENLKAS ENSP00000368391/1-224 ---------- ---------- ---------- --NSPTFKSF EEKVENLK-- ENSBTAP00000049200/1-247 SFSIRSIQHS ISMPAMR--- ---------- --NSPTFKSF EEKVENLK-- ENSTTRP00000000080/1-226 ---------- ---------- ---------- --NSPTFKSF EEKVENLK-- BACU018324/1-222 ---------- ---------- ---------- --NSPTFKSF EEKVENLK-- 251 300 bmy_19963T0/1-286 REMNRVFCVV LFGALTFFGS KVGGTKPAGG DFGEVLNSTA NASSTTTEPL ENSP00000368391/1-224 ---------- ---------S KVGGTKPAGG DFGEVLNSAA NASATTTEPL ENSBTAP00000049200/1-247 ---------- ---------S KVGGNKPAGG DFGEVLNSTA SASATTTEPL ENSTTRP00000000080/1-226 ---------- ---------S KVGGTKPAGG DFGEVLNSTA NASSTTTEPL BACU018324/1-222 ---------- ---------A R--GTKPAGG DFGEVLNSTA NASSTTTEPL 301 350 bmy_19963T0/1-286 PEQTQESL ENSP00000368391/1-224 PEKTQESL ENSBTAP00000049200/1-247 PEQTQEGL ENSTTRP00000000080/1-226 PEQAQESL BACU018324/1-222 PEQTQESL