KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:39 2014 Check: 00 .. Name: ENSBTAP00000049214/1-538 Len: 580 Check: 5308 Weight: 1.00 Name: ENSP00000310241/1-551 Len: 580 Check: 5174 Weight: 1.00 Name: ENSTTRP00000005047/1-455 Len: 580 Check: 117 Weight: 1.00 Name: bmy_20316T0/1-327 Len: 580 Check: 9562 Weight: 1.00 // 1 50 ENSBTAP00000049214/1-538 MAPFAQVLAE LGSFGHFHVQ LLILLSVPSF LTAFYMFTQV FMVLDEAHYC ENSP00000310241/1-551 MAQFVQVLAE IGDFGRFQIQ LLILLCVLNF LSPFYFFAHV FMVLDEPHHC ENSTTRP00000005047/1-455 VAPFAQVAAD IGSFGRFQVQ LLILLSVPNL LTAFCMFTQV FMVLDEAHHC bmy_20316T0/1-327 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000049214/1-538 SVACFRNQTL NLSTAEQLAL SLPLEAAGSP ELCLMFQLPP G-ASLECVLS ENSP00000310241/1-551 AVAWVKNHTF NLSAAEQLVL SVPLDTAGHP EPCLMFRPPP ANASLQDILS ENSTTRP00000005047/1-455 SVAWVKHRTL TLSAAEQPVL SVPVDAAGSP EPCLPFRPPD G-ASLEDVLS bmy_20316T0/1-327 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000049214/1-538 HSFSETQLC- -GWVYPKGRP LSVENEFNIV YGRKHLMETS QSVYVAGLLI ENSP00000310241/1-551 HRFNETQPCD MGWEYPENRL PSLKNEFNLV CDRKHLKDTT QSVFMAGLLV ENSTTRP00000005047/1-455 HSFSETQPCE VGWVYPAD-P LSLKN-LNLA CGRKHPKDTS QSVDLARLLT bmy_20316T0/1-327 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000049214/1-538 GALIFGPLCN WIGHKATLLV QLLLFAILGM STAFVPSFEL YMVLCFSVAT ENSP00000310241/1-551 GTLMFGPLCD RIGRKATILA QLLLFTLIGL ATAFVPSFEL YMALRFAVAT ENSTTRP00000005047/1-455 GALIVGPLCD WIGHEATVLV QLLLFAILGM AAAFVPGFEL YTALRFAVAT bmy_20316T0/1-327 ---------- ---------- ---------M AAAFVPGFEL YTALRFAVAT 201 250 ENSBTAP00000049214/1-538 AVTGYTFSNV TLLTEWVGPS W-RIQAVVLA QRTFSLGQMA LAGLAYGVQN ENSP00000310241/1-551 AVAGLSFSNV TLLTEWVGPS W-RTQAVVLA QCNFSLGQMV LAGLAYGFRN ENSTTRP00000005047/1-455 AVVGYTFSSV TLLAGWVGP- W-RTQAVVLA QYTFSVEQMA LAGLAHGVQS bmy_20316T0/1-327 AVVGYNFSSV TLLAEWVGP- WRRTRPVVLA QCTFSMGQMA LAGLTHGVQS 251 300 ENSBTAP00000049214/1-538 WRLFQIAVTA P-VFLLFC-- ---------- ---------F W------ALP ENSP00000310241/1-551 WRLLQITGTA PGLLLFFY-- ---------- ---------F W------ALP ENSTTRP00000005047/1-455 WRLFQMAGAA P-VPLFLY-- ---------- ---------F W------ALL bmy_20316T0/1-327 WRLFQMAGAA P-VFRSSFTS GEEILPRQAA LGWLRVQRGV WESEPVGALP 301 350 ENSBTAP00000049214/1-538 ESVRWLLTWR KGEEAKQ-IQ KVALVNSRKL PSKILSQLAP EKTSPAGNAL ENSP00000310241/1-551 ESARWLLTRG RMDEAIQLIQ KAASVNRRKL SPELMNQLVP EKTGPSGNAL ENSTTRP00000005047/1-455 ESARWLLTRR RVEEAKQPIQ RVASVNKRKL -LELLSQMVP EKTGPTGDAL bmy_20316T0/1-327 ETARWLLTRG RVEEAKQPIQ RVASVNKRKL SPELLSQ--- -KTGPTGNAL 351 400 ENSBTAP00000049214/1-538 DLFQHPQLRK ETLILFYIWF VDSLVFYGLG LKVGHFGLNI YLTQLTLE-- ENSP00000310241/1-551 DLFRHPQLRK VTLIIFCVWF VDSLGYYGLS LQVGDFGLDV YLTQLIFGAV ENSTTRP00000005047/1-455 DLF-HPQL-- ---------- ---------- ---------- ---------- bmy_20316T0/1-327 DLFRHPQLRK VTLILFYVWF VDSLEYFGLG LK-------- ----LIFRAV 401 450 ENSBTAP00000049214/1-538 --QSRCLPIF IME-----WS QLGTLVLGGL TCITIIFVPA DLPVVVTVLA ENSP00000310241/1-551 EVPARCSSIF MMQRFGRKWS QLGTLVLGGL MCIIIIFIPA DLPVVVTMLA ENSTTRP00000005047/1-455 ---------- ---------- ---------- ---------- -----GTVMA bmy_20316T0/1-327 EVPARYSSIF VMERLGLKWS QLGTLVL--- ---------- DLPVVGTVMA 451 500 ENSBTAP00000049214/1-538 LVGKFALAAR FTIFYVDSAE LFPTVIRQTG MGMVGIFSRI RGILMPLMIL ENSP00000310241/1-551 VVGKMATAAA FTISYVYSAE LFPTILRQTG MGLVGIFSRI GGILTPLVIL ENSTTRP00000005047/1-455 LVGKFATAAG FTISYV-SAE LFPTVIRQTG MGLVGIFSRI GDILTPLVTL bmy_20316T0/1-327 LVGKVATAAG FTISYVYSAE LFPTVI---- --------RI GGILKPLVIL 501 550 ENSBTAP00000049214/1-538 LGEYHVSLFV LIYGSLPIGA GLLCALLTET RGQTLKDTIN DLEHGPSSRS ENSP00000310241/1-551 LGEYHAALPM LIYGSLPIVA GLLCTLLPET HGQGLKDTLQ DLELGPHPR- ENSTTRP00000005047/1-455 LGEYHTALPM LIYGSLPVGA GLLCALLPEP RGWSPKDAMD DLEQESCPH- bmy_20316T0/1-327 LGEYHTALPM LIYGSLPIGA GLLCALLPET RGQTLKDTID DLEQESCPQ- 551 600 ENSBTAP00000049214/1-538 SLKAVLSEKD LEALGSISSP GVAFRAALSS ENSP00000310241/1-551 SPKSVPSEKE TEAKGRTSSP GVAFVSSTYF ENSTTRP00000005047/1-455 PLNAVPSEKD SEASGSTSSP GVTF-SSTYL bmy_20316T0/1-327 ---------- ---------- ----------