KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:49 2014 Check: 00 .. Name: ENSTTRP00000013326/1-903 Len: 983 Check: 7789 Weight: 1.00 Name: bmy_22141T0/1-844 Len: 983 Check: 2635 Weight: 1.00 Name: BACU005655/1-935 Len: 983 Check: 2665 Weight: 1.00 Name: ENSP00000433664/1-907 Len: 983 Check: 8122 Weight: 1.00 Name: ENSBTAP00000049614/1-907 Len: 983 Check: 8122 Weight: 1.00 // 1 50 ENSTTRP00000013326/1-903 VESAIAEGGA SRFSASSGGG GSRGAPQHYP KTAGNXXXXX XXXXXXXXXX bmy_22141T0/1-844 ---------- ---------- ---------- ------EFLG KTPGQNAQKW BACU005655/1-935 VESAIAEGGA SRFS------ ---------- ------EFLG KTPGQNAQKW ENSP00000433664/1-907 VESAIAEGGA SRFSASSGGG GSRGAPQHYP KTAGNSEFLG KTPGQNAQKW ENSBTAP00000049614/1-907 VESAIAEGGA SRFSASSGGG GSRGAPQHYP KTAGNSEFLG KTPGQNAQKW 51 100 ENSTTRP00000013326/1-903 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXILNKLTP EKFDKLCLEL bmy_22141T0/1-844 IPARSTRRDD NSAANNSANE KERHDAIFRK VRGILNKLTP EKFDKLCLEL BACU005655/1-935 IPARSTRRDD NSAANNSANE KERHDAIFRK VRGILNKLTP EKFDKLCLEL ENSP00000433664/1-907 IPARSTRRDD NSAANNSANE KERHDAIFRK VRGILNKLTP EKFDKLCLEL ENSBTAP00000049614/1-907 IPARSTRRDD NSAANNSANE KERHDAIFRK VRGILNKLTP EKFDKLCLEL 101 150 ENSTTRP00000013326/1-903 LNVGVESKLI LKGVILLIVD KALEEPKYSS LYAQLCLRLA EDAPNFDGPA bmy_22141T0/1-844 LNVGVESKLI LKGVILLIVD KALEEPKYSS LYAQLCLRLA EDAPNFDGPA BACU005655/1-935 LNVGVESKLI LKGVILLIVD KALEEPKYSS LYAQLCLRLA EDAPNFDGPA ENSP00000433664/1-907 LNVGVESKLI LKGVILLIVD KALEEPKYSS LYAQLCLRLA EDAPNFDGPA ENSBTAP00000049614/1-907 LNVGVESKLI LKGVILLIVD KALEEPKYSS LYAQLCLRLA EDAPNFDGPA 151 200 ENSTTRP00000013326/1-903 AEGQPGQKQS TTFRRLLISK LQDEFENRTR NVDVYDKREN PLLPEEEEQR bmy_22141T0/1-844 AEGQPGQKQS TTFRRLLISK LQDEFENRTR NVDVYDKREN PLLPEEEEQR BACU005655/1-935 AEGQPGQKQS TTFRRLLISK LQDEFENRTR NVDVYDKREN PLLPEEEEQR ENSP00000433664/1-907 AEGQPGQKQS TTFRRLLISK LQDEFENRTR NVDVYDKREN PLLPEEEEQR ENSBTAP00000049614/1-907 AEGQPGQKQS TTFRRLLISK LQDEFENRTR NVDVYDKREN PLLPEEEEQR 201 250 ENSTTRP00000013326/1-903 AIAKIKMLGN IKFIGELGKL DLIHESILHK CIKTLLEKKK RVQLKDMGED bmy_22141T0/1-844 AIAKIKMLGN IKFIGELGKL DLIHESILHK CIKTV----- ---------- BACU005655/1-935 AIAKIKMLGN IKFIGELGKL DLIHESILHK CIKTLLEKKK RVQLKDMGED ENSP00000433664/1-907 AIAKIKMLGN IKFIGELGKL DLIHESILHK CIKTLLEKKK RVQLKDMGED ENSBTAP00000049614/1-907 AIAKIKMLGN IKFIGELGKL DLIHESILHK CIKTLLEKKK RVQLKDMGED 251 300 ENSTTRP00000013326/1-903 LECLCQIMRT VGPRLDHERA KSLMDQYFAR MCSLMLSKEL PARIRFLLQD bmy_22141T0/1-844 ---------- ------SMSG NSLMDQYFAR MCSLMLSKEL PARIRFLLQD BACU005655/1-935 LECLCQIMRT VGPRLDHERA KSLMDQYFAR MCSLMLSKEL PARIRFLLQD ENSP00000433664/1-907 LECLCQIMRT VGPRLDHERA KSLMDQYFAR MCSLMLSKEL PARIRFLLQD ENSBTAP00000049614/1-907 LECLCQIMRT VGPRLDHERA KSLMDQYFAR MCSLMLSKEL PARIRFLLQD 301 350 ENSTTRP00000013326/1-903 TVELREHHWV PRKAFLDNGP KTINQIRQDA VKDLGVFIPA PMAQGMRSDF bmy_22141T0/1-844 TVELREHHWV PRKAFLDNGP KTINQIRQDA VKDLGVFIPA PMAQGMRSDF BACU005655/1-935 TVELREHHWV PRKAFLDNGP KTINQIRQDA VKDLGVFIPA PMAQGMRSDF ENSP00000433664/1-907 TVELREHHWV PRKAFLDNGP KTINQIRQDA VKDLGVFIPA PMAQGMRSDF ENSBTAP00000049614/1-907 TVELREHHWV PRKAFLDNGP KTINQIRQDA VKDLGVFIPA PMAQGMRSDF 351 400 ENSTTRP00000013326/1-903 FLEGPFMPPR MKMDRDPLGG LADMFGQMPG SGIGTGPGVI QDRFSPTMGR bmy_22141T0/1-844 FLEGPFMPPR MKMDRDPLGG LADMFGQMPG SGIGTGPGVI QDRFSPTMGR BACU005655/1-935 FLEGPFMPPR MKMDRDPLGG LADMFGQMPG SGIGTGPGVI QDRFSPTMGR ENSP00000433664/1-907 FLEGPFMPPR MKMDRDPLGG LADMFGQMPG SGIGTGPGVI QDRFSPTMGR ENSBTAP00000049614/1-907 FLEGPFMPPR MKMDRDPLGG LADMFGQMPG SGIGTGPGVI QDRFSPTMGR 401 450 ENSTTRP00000013326/1-903 HRSNQLFNGH GGHIMPPTQS QFGEMGGKFM KSQGLSQLYH NQSQGLLSQL bmy_22141T0/1-844 HRSNQLFNGH GGHIMPPTQS QFGEMGGKFM KXQGLSQLYH NQSQGLLSQL BACU005655/1-935 HRSNQLFNGH GGHIMPPTQS QFGEMGGKFM KSQGLSQLYH NQSQGLLSQL ENSP00000433664/1-907 HRSNQLFNGH GGHIMPPTQS QFGEMGGKFM KSQGLSQLYH NQSQGLLSQL ENSBTAP00000049614/1-907 HRSNQLFNGH GGHIMPPTQS QFGEMGGKFM KSQGLSQLYH NQSQGLLSQL 451 500 ENSTTRP00000013326/1-903 QGQSKDMPPR FSKKGQLNAD EISLRPAQSF LMNKNQVPKL QPQITMIPPS bmy_22141T0/1-844 QGQSKDMPPR FSKKGQLNAD EISLRPAQSF LMNKNQVPKL QPQITMIPPS BACU005655/1-935 QGQSKDMPPR FSKKGQLNAD EISLRPAQSF LMNKNQVPKL QPQITMIPPS ENSP00000433664/1-907 QGQSKDMPPR FSKKGQLNAD EISLRPAQSF LMNKNQVPKL QPQITMIPPS ENSBTAP00000049614/1-907 QGQSKDMPPR FSKKGQLNAD EISLRPAQSF LMNKNQVPKL QPQITMIPPS 501 550 ENSTTRP00000013326/1-903 AQPPRTQTPP LGQTPQLGLK TNPPLIQEKP AKTSKKPPPS KEELLKLTXX bmy_22141T0/1-844 AQPPRTQTPP LGQTPQLGLK TNPPLIQEKP AKTSKKPPPS KEELLKLTET BACU005655/1-935 AQPPRTQTPP LGQTPQLGLK TNPPLIQEKP AKTSKKPPPS KEELLKLTET ENSP00000433664/1-907 AQPPRTQTPP LGQTPQLGLK TNPPLIQEKP AKTSKKPPPS KEELLKLTET ENSBTAP00000049614/1-907 AQPPRTQTPP LGQTPQLGLK TNPPLIQEKP AKTSKKPPPS KEELLKLTET 551 600 ENSTTRP00000013326/1-903 XXXXXXNSGN ANEAVN--VE MRA-KHFLPE M-SKVIILSL DRSDEDKEKA bmy_22141T0/1-844 VVTEYLNSGN ANEAVNGVRE MRAPKHFLPE MLSKVIILSL DRSDEDKEKA BACU005655/1-935 VVTEYLNSGN ANEAVNGVRE MRAPKHFLPE MLSKVIILSL DRSDEDKEKA ENSP00000433664/1-907 VVTEYLNSGN ANEAVNGVRE MRAPKHFLPE MLSKVIILSL DRSDEDKEKA ENSBTAP00000049614/1-907 VVTEYLNSGN ANEAVNGVRE MRAPKHFLPE MLSKVIILSL DRSDEDKEKA 601 650 ENSTTRP00000013326/1-903 SSLISLLKQE GIATSDNFMQ AFLNVLDQCP KLEVDIPLVK SYLAQFAARA bmy_22141T0/1-844 SSLISLLKQE GIATSDNFMQ AFLNVLDQCP KLEVDIPLVK SYLAQFAARA BACU005655/1-935 SSLISLLKQE GIATSDNFMQ AFLNVLDQCP KLEVDIPLVK SYLAQFAARA ENSP00000433664/1-907 SSLISLLKQE GIATSDNFMQ AFLNVLDQCP KLEVDIPLVK SYLAQFAARA ENSBTAP00000049614/1-907 SSLISLLKQE GIATSDNFMQ AFLNVLDQCP KLEVDIPLVK SYLAQFAARA 651 700 ENSTTRP00000013326/1-903 IISELVSISE LAQPLESGTH FPLFLLCLQQ LAKLQDREWL TELFQQSKVN bmy_22141T0/1-844 IISELVSISE LAQPLESGTH FPLFLLCLQQ LAKLQDREWL TELFQQSKVN BACU005655/1-935 IISEL----- ---------- ---------Q LAKLQDREWL TELFQQSKVN ENSP00000433664/1-907 IISELVSISE LAQPLESGTH FPLFLLCLQQ LAKLQDREWL TELFQQSKVN ENSBTAP00000049614/1-907 IISELVSISE LAQPLESGTH FPLFLLCLQQ LAKLQDREWL TELFQQSKVN 701 750 ENSTTRP00000013326/1-903 MQKMLPEIDQ NKDRMLEILE GKGLSFLFPL LKLEKELLKQ IKLDPSPQTI bmy_22141T0/1-844 MQKMLPEIDQ NKDRMLEILE GKGLSFLFPL LKLEKELLKQ IKLDPSPQTI BACU005655/1-935 MQKMLPEIDQ NKDRMLEILE GKGLSFLFPL LKLEKELLKQ IKLDPSPQTI ENSP00000433664/1-907 MQKMLPEIDQ NKDRMLEILE GKGLSFLFPL LKLEKELLKQ IKLDPSPQTI ENSBTAP00000049614/1-907 MQKMLPEIDQ NKDRMLEILE GKGLSFLFPL LKLEKELLKQ IKLDPSPQTI 751 800 ENSTTRP00000013326/1-903 YKWIKDNISP KLHVDKGFVN ILMTSFLQYI SSEVNPPSDE TDSSSAPSKE bmy_22141T0/1-844 YKWIKDNISP KLHVDKGFVN ILMTSFLQYI SSEVNPPSDE TDSSSAPSKE BACU005655/1-935 YKWIKDNISP KLHVDKGFVN ILMTSFLQYI SSEVNPPSDE TDSSSAPSKE ENSP00000433664/1-907 YKWIKDNISP KLHVDKGFVN ILMTSFLQYI SSEVNPPSDE TDSSSAPSKE ENSBTAP00000049614/1-907 YKWIKDNISP KLHVDKGFVN ILMTSFLQYI SSEVNPPSDE TDSSSAPSKE 801 850 ENSTTRP00000013326/1-903 QLEQEKQLLL SFKPVMQKFL HDHVDLQVSA LYALQVHCYX XXXXXXXXXX bmy_22141T0/1-844 QLEQEKQLLL SFKPVMQKFL HDHVDLQVSA LYALQVHCYN SNFPKGMLLR BACU005655/1-935 QLEQEKQLLL SFKPVMQKFL HDHVDLQVSA LYALQVHCYN SNFPKGMLLR ENSP00000433664/1-907 QLEQEKQLLL SFKPVMQKFL HDHVDLQVSA LYALQVHCYN SNFPKGMLLR ENSBTAP00000049614/1-907 QLEQEKQLLL SFKPVMQKFL HDHVDLQVSA LYALQVHCYN SNFPKGMLLR 851 900 ENSTTRP00000013326/1-903 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- bmy_22141T0/1-844 FFVHFYDMEI IEEEXFLAWK EDITQEFPGK GKALFQ---- ---------- BACU005655/1-935 FFVHFYDMEI IEEEAFLAWK EDITQEFPGK GKALFQCFAA TEGWEQQEER ENSP00000433664/1-907 FFVHFYDMEI IEEEAFLAWK EDITQEFPGK GKALFQ---- ---------- ENSBTAP00000049614/1-907 FFVHFYDMEI IEEEAFLAWK EDITQEFPGK GKALFQ---- ---------- 901 950 ENSTTRP00000013326/1-903 ---------- ---------- ---------- -------VNQ WLTWLET-AE bmy_22141T0/1-844 ---------- ---------- ---------- -------VN- ---LERNLAP BACU005655/1-935 EARNVSAGRH GAYMQVRTTW QRAVAGNEVS TSFQSRKLEH WLPLEKS-KP ENSP00000433664/1-907 ---------- ---------- ---------- -------VNQ WLTWLET-AE ENSBTAP00000049614/1-907 ---------- ---------- ---------- -------VNQ WLTWLET-AE 951 1000 ENSTTRP00000013326/1-903 ---EEE-SEE EAD------- ---------- --- bmy_22141T0/1-844 KCGQKELHLK KLHCGF---- ---------- --- BACU005655/1-935 HCFKEQ-NSP GANKGFGIEL SPEKMLSKTL HPT ENSP00000433664/1-907 ---EEE-SEE EAD------- ---------- --- ENSBTAP00000049614/1-907 ---EEE-SEE EAD------- ---------- ---