KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:51 2014 Check: 00 .. Name: ENSP00000386787/1-1610 Len: 1646 Check: 2158 Weight: 1.00 Name: ENSBTAP00000049631/1-1519 Len: 1646 Check: 5217 Weight: 1.00 Name: bmy_20793T0/1-1461 Len: 1646 Check: 4517 Weight: 1.00 Name: ENSTTRP00000004260/1-1458 Len: 1646 Check: 9102 Weight: 1.00 // 1 50 ENSP00000386787/1-1610 MAGLRRPQPG CYCRTAAAVN LLLGVFQVLL PCCRPGGAQG QAIEPLPNVV ENSBTAP00000049631/1-1519 ---------- ---------- ---------- ---------- ---------- bmy_20793T0/1-1461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004260/1-1458 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000386787/1-1610 ELWQAEEGEL LLPTQGDSEE GLEEPSQEQS FSDKLFSGKG LHFQPSVLDF ENSBTAP00000049631/1-1519 ---------- ---------- ---------S FSDKLFSGKG LHFQPSVLDF bmy_20793T0/1-1461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004260/1-1458 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000386787/1-1610 GIQFLGHPVA KILHAYNPSR DSEVVVNSVF AAAGHFHVPP VPCRVIPAMG ENSBTAP00000049631/1-1519 GVQFLGQPAA KILYAYNPSR ESEVVVNSVF TAARHFHVPP VHCRVIPAMG bmy_20793T0/1-1461 ---------- ------MPSH LAEI------ ---------- ---------- ENSTTRP00000004260/1-1458 ---------- ---------- ---------- ---------- --------MG 151 200 ENSP00000386787/1-1610 KTSFRIIFLP TEEGSIESSL FINTSSYGVL SYHVSGIGTR RISTEGSAKQ ENSBTAP00000049631/1-1519 KTSFRIIFLP TEEGSIESSL FINTSSHGVL SYHVSGFGTR VMSAKGSAEQ bmy_20793T0/1-1461 -------F-- ---GCSDCDC QAKCLVYNPY ARHVT----- -LNRRGN--- ENSTTRP00000004260/1-1458 KTSFRIIFLP TEEGSIESSL FINTSSHGVL SYHVSGIGTR RISAEGSVKQ 201 250 ENSP00000386787/1-1610 LPNAYFLLPK VQSIQLSQMQ AETTNTSLLQ VQLECSLHNK VCQQLKGCYL ENSBTAP00000049631/1-1519 LPNAYFLLPQ VQTVQLSQTQ AETTNSSLLQ VQLECSLHNK VCQRLKSCYV bmy_20793T0/1-1461 ---------- --------LT AETTNTSLLQ VQLECSLHNK VCQQLKSCYV ENSTTRP00000004260/1-1458 LPNAYFLLPQ VQSVQLSQTQ AETTNTSLLQ VQLECSLHNK VCQQLKSCYV 251 300 ENSP00000386787/1-1610 ESDDVLRLQM SIMVTMENFS KEFEENTQHL LDHLSIVYVA TDESETSDDS ENSBTAP00000049631/1-1519 ESDDVLRLQM SIIVTMENTS KEFEENTQDL LDHLSIIYVA TDKSESSDDS bmy_20793T0/1-1461 ESDDVLRLQM SIIVTMENAS KEFEENTQDL LDHLSIIYVA TDKSETSDDS ENSTTRP00000004260/1-1458 ESDDVLRLQM SIIVTMENAS KEFEENTQDL LDHLSIIYVA TDKSETSDDS 301 350 ENSP00000386787/1-1610 AVNMYILHSG NSLIWIQDIR HFSQRDALSL QFEPVLLPTS TTNFTKIASF ENSBTAP00000049631/1-1519 AVNMYILHSG NSLIWIQDVR HFSQRDVLSL QFEPVLLPTS TTNFTKIASF bmy_20793T0/1-1461 AVNMYILHSG NSLIWIQDVH HFSQRDALSL QFEPVLLPTS TTNFTKIASF ENSTTRP00000004260/1-1458 AVNMYILHSG NSLLWIQDVH HFSQRDALSL QFEPVLLPTS TTNFTKIASF 351 400 ENSP00000386787/1-1610 TCKAATSCDS GIIEDVKKTT HTPTLKACLF SSVAQGYFRM DSSATQFHIE ENSBTAP00000049631/1-1519 TCK-APSCES GARED-GKKK DTPTLKACLS SPVVQGYFRM DPSATQFHIE bmy_20793T0/1-1461 TCK-APSCDS GMRED-RKKK NTPTLKACLS SPVAQGYFRM DSSATQFHIE ENSTTRP00000004260/1-1458 TCKAAPSCDS GMRED-RKKK NTPTLKACLS SPVSQGYFRM DSSATQFHIE 401 450 ENSP00000386787/1-1610 THENTSGLWS IWYRNHFDRS VVLNDVFLSK ETKHMLKILN FTGPLFLPPG ENSBTAP00000049631/1-1519 NHENTSGLWS LWYLNHFDHG VVLNDVFVSK ETKHVLKILN FTGPLFLPPG bmy_20793T0/1-1461 THENTSGLWS MWYLNRFDRG VVLNDVFVSK ETKRVLKILN FTGPLFLPPG ENSTTRP00000004260/1-1458 THENTSGLWS MWYLNHFDRG VVLNDVFVSK ETKRVLKILN FTGPLFLPPG 451 500 ENSP00000386787/1-1610 CWNIFSLKLA VKDIAINLFT NVFLTTNIGA IFAIPLQIYS APTK------ ENSBTAP00000049631/1-1519 CWKIFSLKLA VKDIAINVFT HVFLTTNIGA VFAIPLQIYS APTK------ bmy_20793T0/1-1461 CWKIFSLKLA VKDFAINLFT RVFLTTNIGA VFAVPLQIYL APTKLLLLLL ENSTTRP00000004260/1-1458 CWKIFSLKLA VKDFAINLFT RVFLTTNVGA VFAVPLQIYL APTK------ 501 550 ENSP00000386787/1-1610 ------EGSL GFEVIAHCGM HYFMGKSKAG NPNWNGSLSL DQSTWNVDSE ENSBTAP00000049631/1-1519 ------EGSL GFEVIAHCGM HYFMGKSKAE NPDWEGSLSL DPSTWDVDSE bmy_20793T0/1-1461 FDPSSSEGSL GFEVIAHCGM HYFMGKSKAE NPNWEGSLSL DWSTWDVDSE ENSTTRP00000004260/1-1458 ------EGSL GFEVIAHCGM HYFMGKSKAE NPNWEGSLSL DWSTWDVDSE 551 600 ENSP00000386787/1-1610 LANKLYERWK KYKNGDVCKR NVLGTTRFAH LKKSKESESF VFFLPRLIAE ENSBTAP00000049631/1-1519 LANTLYERWK KLKHGDVCKR TVLGVTRFAH SKKSKESEPF AVFLPRLVPE bmy_20793T0/1-1461 LANTLYERWK KLKNGDVCKR NVLGMTRFAH SKKSKESEPF ALFLPRLIPE ENSTTRP00000004260/1-1458 LANTLYERWK KLKNGDVCKR NVLGMTRFAH SKKSKESEPF ALFLPRLIPE 601 650 ENSP00000386787/1-1610 PGLMLNFSAT ALRSRM---- ---------- --IKYFVVQN PSSWPVSLQL ENSBTAP00000049631/1-1519 PGLVLNFSAT ALRNSM---- ---------- --VKYFVVKN PSSWPVSLQL bmy_20793T0/1-1461 TGLVLNFSAT ALRNSVVRVL RLFISSFHPS SWVKYFVVKN PSSSPVSLQL ENSTTRP00000004260/1-1458 AGLVINFSAT ALRNSV---- ---------- --VKYFVVKN PSSWPVSLQL 651 700 ENSP00000386787/1-1610 LPLSLYPKPE ALVHLLHRWF GTDMQMINFT TGEFQLTEAC PYLGTHSEES ENSBTAP00000049631/1-1519 LPVSLYPKPE AAARLLHKWF GTDMQMINLT TSEFQLTKAC PYLGVRSEGS bmy_20793T0/1-1461 LPVSLYPKPE AAARLLHKWF GTDVQMINFT TSEFQLTKAC PYRGVHSEES ENSTTRP00000004260/1-1458 LPVSLYPKPE AAARLLHKWF GTDVQMINFT TSEFQLTKAC PYRGVHSEES 701 750 ENSP00000386787/1-1610 RFGILHLHLQ PLEMKRVGVV FTPADYGKVT SLILIRNNLT VIDMIGVEGF ENSBTAP00000049631/1-1519 RFGILHLHLQ PLERKRVGVV FTPADYGKVS SLILIRNNLT VIDMIGVEGF bmy_20793T0/1-1461 RFGILHLHLQ PLERKRVGVV FTPADYGKVT SLILIRNNLT VIDMIGVEGF ENSTTRP00000004260/1-1458 RFGILHLHLQ PLERKRVGVV FTPADYGKVT SLILIRNNLT VIDMIGVEGF 751 800 ENSP00000386787/1-1610 GARELLKVGG RLPGAGGSLR FKVPESTLMD CRRQLKDSKQ ILSITKNFKV ENSBTAP00000049631/1-1519 GARELLKVGG RLPGTGGSLR FKVPESTLMD CRRQLKDSKQ ILSITKNFKV bmy_20793T0/1-1461 GARELLKVGG RLPGTGGSLR FKVPESTLMG CRRQLKDSKQ ILSITKNFKV ENSTTRP00000004260/1-1458 GARELLKVGG RLPGTGGSLR FKVPESTLMG CRRQLKDSKQ ILSITKNFKV 801 850 ENSP00000386787/1-1610 ENIGPLPITV SSLKINGYNC QGYGFEVLDC HQFSLDPNTS RDISIVFTPD ENSBTAP00000049631/1-1519 ENIGPLPITV TSLKINGYNC QGYGFEVLDC HQFSLGPNTS RDISIVFTPD bmy_20793T0/1-1461 ENIGPLPITV TSLKINGYNC QGYGFEILDC QQFSLDPNTS RDISIVFTPD ENSTTRP00000004260/1-1458 ENIGPLPITV TSLKINGYNC QGYGFEVLDC QQFSLDPNTS RDISIVFTPD 851 900 ENSP00000386787/1-1610 FTSSWVIRDL SLVTAADLEF RFTLNVTLPH HLLPLCADVV PGPSWEESFW ENSBTAP00000049631/1-1519 FTSSWVIREL TLVTAADLEF RFTLNVTLPH HLLPLCADVV PGPSWEESFW bmy_20793T0/1-1461 FTSSWVIREL TLVTAADLEF RFTLNVTLPH HLLPLCADVV PGPSWEESFW ENSTTRP00000004260/1-1458 FTSSWVIREL TLATAADLEF RFTLNVTLPH HLLPLCADVV PGPSWEESFW 901 950 ENSP00000386787/1-1610 RLTVFFVSLS LLGVILIAFQ QAQYILMEFM KTRQRQNASS SSQQNNGPMD ENSBTAP00000049631/1-1519 RLTVFFVSLS LLGVILIAFQ QAQYILMEFM KTRQRQNASS SSQQSTAPVD bmy_20793T0/1-1461 RLTVFFVSLS LLGVILIAFQ QAQYILMEFM KTRQRQNASS SSQQSNSPMD ENSTTRP00000004260/1-1458 RLTVFFVSLS LLGVILIAFQ QAQYILMEFV KTRQRQNASS SSQQSNSPMD 951 1000 ENSP00000386787/1-1610 VISPHSYKSN CKNFLDTYGP SDKGRGKNCL PVNTPQSRIQ NAAKRSPATY ENSBTAP00000049631/1-1519 VISAHSHKSN CKNFLDAYAP SDKGRGKSCL PVSSPQSRTQ NATKRSPATC bmy_20793T0/1-1461 VISSHSHKSN CKNFLDTYSP SDKGRGKSCL PVNPPQSRIQ NATKRSPATY ENSTTRP00000004260/1-1458 VISSHSHKSN CKNFLDTYSP SDKGRGKSCL PVNPPQSRIQ NATKRSPATY 1001 1050 ENSP00000386787/1-1610 GHSQKKHKCS VYYSKHKTST AAASSTSTTT EEKQTSPLGS SLPAAKEDIC ENSBTAP00000049631/1-1519 GHSQKKHKCS VYYGRHR-GA AVASSAGAPS EDRPAPAKAG G--------C bmy_20793T0/1-1461 SHSQKKHKCS VYYGKHKASA AVAGSASAPA EDKQASAPGG SLAAAKEDAC ENSTTRP00000004260/1-1458 SHSQKKHKCS VYYGKHKASA AVAGSASAPA EDKQASAPGG SLAAAKEDAC 1051 1100 ENSP00000386787/1-1610 TDAMRENWIS LRYASGINVN LQKNLTLPKN LLNKEENTLK NTIVFSNPSS ENSBTAP00000049631/1-1519 PAGAGEAWVG LRCAGGLSAN LQKSLALPRS FLGKDENTLK SAVAASSPSS bmy_20793T0/1-1461 PAGMGEAWVG LKYTGGLNVN LQKNLTLPKN LLSKEENTLK NAIAVSNTSS ENSTTRP00000004260/1-1458 PAGMGETWVG LKYTGGLNVN LQKNLTLPQN LLSKEENTLK NAIAVSNTSS 1101 1150 ENSP00000386787/1-1610 ECSMKEGIQT CMFPKETDIK TSENTAEFKE RELCPLKTSK KLPENHLPRN ENSBTAP00000049631/1-1519 ECHVKEGAQT CVFPKETDFQ VSESVAELKE REVCPMKTPK KLPENHLPRS bmy_20793T0/1-1461 ECHVKEGVQT CMFPKETDLQ ISENIAELKE REVCPLKTPK KLPENHLPRN ENSTTRP00000004260/1-1458 ECHVKEGVQT CMFPKETDLQ ISENIAELKE REVCPLKTPK KLPENHLPRN 1151 1200 ENSP00000386787/1-1610 SPQYHQPDLP EISRKNNGNN QQVPVKNEVD HCENLKKVDT KPSSEKKIHK ENSBTAP00000049631/1-1519 SPQC-QSDLP DISRKNNGNN QQVPVKNEVD NCESLKKVDT KSSSEKKIHK bmy_20793T0/1-1461 SPQC-QSDLP EISRKNNGNN QQVPVKNEVD NCETLKKVDT KSSSEKKIHK ENSTTRP00000004260/1-1458 SPQC-QSDLP EISRKNNGNN QQVPVKNEVD NCETLKKVDT RSASEKKIHK 1201 1250 ENSP00000386787/1-1610 TSREDMFSEK QDIPFVEQED PYRKKKLQEK REGNLQNLNW SKSRTCRKNK ENSBTAP00000049631/1-1519 AAKEDGCSEK QDIPSIEQED PYRKKALQEK KEGNVQNLNW NKNRMCRKNK bmy_20793T0/1-1461 ASKEDVCSEK QDVPSVEQED PYRKKKPQEK KEGNLQNLNW NKNRACRKNK ENSTTRP00000004260/1-1458 ASKEDVCSEK QDVPSVEQED PYRKKRLQEK KEGNLQNLNW NKNRACRKNK 1251 1300 ENSP00000386787/1-1610 KRGVAPVSRP PEQSDLKLVC SDFERSELSS DINVRSWCIQ ESTREVCKAD ENSBTAP00000049631/1-1519 KRGAAQVLRP SDQSELKLVC SEFERSELSS DINVRNWRIQ ENPGEACKAG bmy_20793T0/1-1461 KRGAAQGLRP SEQSELKLVC SEFERSELSS AIDLRSWCIQ ENPGEACKTD ENSTTRP00000004260/1-1458 KRGAAQVLRP SEQSELKLVC SELERSELSS DIDLRSWCIQ ENPGEACKTD 1301 1350 ENSP00000386787/1-1610 AEIASSLPAA QREAEGYYQK PEKKCVDKFC SDSSSDCGSS SGSVRASRGS ENSBTAP00000049631/1-1519 ASSGSSLPAT QGEAEGYFQK PGKKGAEKSC SDSGSDCGSS SGSVRASRGS bmy_20793T0/1-1461 AGIGSSLPAS QGEAEGYFQK PGKKRGEKSC SDSSSDCGSS SGSVRASRGS ENSTTRP00000004260/1-1458 AGIGSSLPAS QGEAEGYFQK PGKKRMEKSC SDSSSDCGSS SGSVRASRGS 1351 1400 ENSP00000386787/1-1610 WGSWSSTSSS DGDKKPMVDA QHFLPAGDSV SQNDFPSEAP ISLNLSHNIC ENSBTAP00000049631/1-1519 WGSWSSASSS DGDRKPAVGP PRCLLPGDSV SQNDFSSEAP ISLNLSRNIC bmy_20793T0/1-1461 WGSWSSASSS DGDKKPTLGP QHFLPPGDSV SQNDFPSEAP ISLNLSHNIC ENSTTRP00000004260/1-1458 WGSWSSASSS DGDKKPMLGP QHFLPPXXXX XXXXXXXXXX XXXXXXXXXX 1401 1450 ENSP00000386787/1-1610 NPMTVNSLPQ YAEPSCPSLP AGPTGVEEDK GLYSPGDLWP TPPVCVTSSL ENSBTAP00000049631/1-1519 NPTDVSGLPA PADAPCPSLP AGPAAAEE-Q GLCAPGDLWP AQPVCVTGGF bmy_20793T0/1-1461 NPTDVSSFPR HADAPCPSLP AGPAAVEEDK GLYPPGDLWP AQPVCVTSGF ENSTTRP00000004260/1-1458 XXXDVSSFPR HVDAPCPSLP AGPAAVEEDK GLYPPGDLWP AQPVCVTSGF 1451 1500 ENSP00000386787/1-1610 NCTLENGVPC VIQESAPV-H NSFIDWSAT- CEGQ-----F SSAYCPLELN ENSBTAP00000049631/1-1519 GCALESGGPA ALPPPAAVPS SSFIDWNAT- CEGQ-----F PSVYCPLELN bmy_20793T0/1-1461 GCALESSGPA VLPAPAPV-H SRVEELAAMK MLGNNIVLLF LSLIYPLFFV ENSTTRP00000004260/1-1458 GCALESSGPA VLPAPAPV-H SSFIDWNAT- CEGQ-----F PSVYCPLELD 1501 1550 ENSP00000386787/1-1610 DYNAFP-EEN MNYANGFPCP ADVQTDFIDH NSQSTWNTPP NMPAAWGHAS ENSBTAP00000049631/1-1519 DYNAFP-EEG MNYPSGFPCP AEVQTDFIDH SSPSAWGSPP SVPTAWGHAS bmy_20793T0/1-1461 AVSLIGMQQN INYPNGFPCP AEVQTDFIDH SSQSAWNSPP NVPTAWGHAG ENSTTRP00000004260/1-1458 NPNVI---QN INYPNGFPCP AEVQTDFIDH SSQSAWNSPP NVPTAWGHAG 1551 1600 ENSP00000386787/1-1610 FISSPPYLTS TRSLSPMSGL FGSIWAPQSD VYENCCPINP TTEHSTHMEN ENSBTAP00000049631/1-1519 LISSPPYLTS TRSLSPMSGL FGSIWAPQSD VYENCCAINP TTEHSAHMEN bmy_20793T0/1-1461 LISSPPYLTS TRSLSPMSGL FGSIWAPQSD VYENCCPVNP TTEHPTHMEN ENSTTRP00000004260/1-1458 LISSPPYLTS TRSLSPMSGL FGSIWAPQSD VYENCCPINP TTEHSTHMEN 1601 1650 ENSP00000386787/1-1610 QAVVCKEYYP GFNPFRAYMN LDIWTTTANR NANFPLSRDS SYCGNV ENSBTAP00000049631/1-1519 QAVMCKEYYP GFNPFRAYMD LDIWTSTANR NANFPLSRDS SYCGNV bmy_20793T0/1-1461 QAVMCKEYYP GFNPFRAYMD LDIWTSTANR SANFPLSRDS SYCGNV ENSTTRP00000004260/1-1458 QAVMCKEYYP GFNPFRAYMD LDIWTSTANR NANFPLSRDS SYCGNV