KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:51 2014 Check: 00 .. Name: bmy_21097T0/1-313 Len: 317 Check: 1542 Weight: 1.00 Name: BACU012666/1-230 Len: 317 Check: 8979 Weight: 1.00 Name: ENSTTRP00000010603/1-194 Len: 317 Check: 9734 Weight: 1.00 Name: ENSP00000307280/1-194 Len: 317 Check: 8812 Weight: 1.00 Name: ENSBTAP00000049636/1-192 Len: 317 Check: 5303 Weight: 1.00 // 1 50 bmy_21097T0/1-313 MAPKKDVKKP AAAAAPAAAP APAPAPAPAH EPAPAPAPPK EKKIDLSAIK BACU012666/1-230 MAPKKDVKKP AAAAAPA--- -PAPAPAPAH EPAPAPAPPK EKKIDLSAIK ENSTTRP00000010603/1-194 MAPKKDVKKP AAAAAPA--- -PAPAPAPA- -PAPAPAPPK EAKIDLSAIK ENSP00000307280/1-194 MAPKKDVKKP VAAAAAA--- -PAPAPAPA- -PAPAPAKPK EEKIDLSAIK ENSBTAP00000049636/1-192 MAPKKDVKKP AAAAA----- -PAPAPAPA- -PAPAPAPPK EEKIDLSAIK 51 100 bmy_21097T0/1-313 KAKKLSKGTG YFSLKPDASC EVTASPEIKG SLGKGGPHSG IGAALNSLFS BACU012666/1-230 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010603/1-194 ---------- ---------- ---------- ---------- ---------- ENSP00000307280/1-194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000049636/1-192 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_21097T0/1-313 FAAVCSPEAP SWWIFPSVLT RLLVSELSFS IPEIEFSMQQ QDEFKEAFLL BACU012666/1-230 ---------- ---------- ---------- ---IEFSMQQ QDEFKEAFLL ENSTTRP00000010603/1-194 ---------- ---------- ---------- ---IEFSQQQ QDEFKEAFLL ENSP00000307280/1-194 ---------- ---------- ---------- ---IEFSKEQ QDEFKEAFLL ENSBTAP00000049636/1-192 ---------- ---------- ---------- ---IEFSKQQ QDEFKEAFLL 151 200 bmy_21097T0/1-313 YDRQGDNKIT LNQVGDVLRA LGTNPTNAEV KEVLGNPSNE EMNAKKIEFQ BACU012666/1-230 YDRQGDNKIT LSQVGDVLRA LGTNPTNAEV KEVLGNPSNE EMNVKKIEFE ENSTTRP00000010603/1-194 YDRTGDSKIT LSQVGDVLRA LGTNPTNAEV KAVLGNPSNE EMNAKKIEFE ENSP00000307280/1-194 FDRTGDSKIT LSQVGDVLRA LGTNPTNAEV RKVLGNPSNE ELNAKKIEFE ENSBTAP00000049636/1-192 FDRTGECKIT LSQVGDVLRA LGTNPTNAEV KKVLGNPSNE EMNAKKIEFE 201 250 bmy_21097T0/1-313 QFLPMLQSIS NKKDQGTYED FVEGLRVFDK EGNGTVMGAE LRHVLATLGE BACU012666/1-230 QFLPMLQSIS NKKDQGTYED FVEGLRVFDK EGNGTVMGAE LRHVLATLGE ENSTTRP00000010603/1-194 QFLPMMQSIS NNKDQGTYED FVEGLRVFDK EGNGTVMGAE LRHVLATLGE ENSP00000307280/1-194 QFLPMMQAIS NNKDQATYED FVEGLRVFDK EGNGTVMGAE LRHVLATLGE ENSBTAP00000049636/1-192 QFLPMLQAIS NNKDQGTYED FVEGLRVFDK EGNGTVMGAE LRHVLATLGE 251 300 bmy_21097T0/1-313 KMKEEEVEAL LAGQEDSNGC INYEDQALFM KTGWNLILRT PMTNCPNLFT BACU012666/1-230 KMKEEEVEAL LAGQEDSNGC INYEDQALFM KTGWNLILRT PMTNCPNLFT ENSTTRP00000010603/1-194 KMKEEEVEAL MAGQEDSNGC INYEA---FV K--------- ------HIMS ENSP00000307280/1-194 KMKEEEVEAL MAGQEDSNGC INYEA---FV K--------- ------HIMS ENSBTAP00000049636/1-192 KMKEEEVEAL MAGQEDSNGC INYEA---FV K--------- ------HIMS 301 350 bmy_21097T0/1-313 IIQKNKTIWT ILD---- BACU012666/1-230 IIQKNKTIWT ILDWRTP ENSTTRP00000010603/1-194 V--------- ------- ENSP00000307280/1-194 I--------- ------- ENSBTAP00000049636/1-192 N--------- -------