KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:53 2014 Check: 00 .. Name: ENSTTRP00000007753/1-1435 Len: 1476 Check: 7384 Weight: 1.00 Name: ENSP00000345436/1-1431 Len: 1476 Check: 4902 Weight: 1.00 Name: ENSBTAP00000049651/1-1413 Len: 1476 Check: 7014 Weight: 1.00 Name: bmy_02713T0/1-1306 Len: 1476 Check: 4703 Weight: 1.00 Name: BACU009206/1-1366 Len: 1476 Check: 4768 Weight: 1.00 // 1 50 ENSTTRP00000007753/1-1435 MGKEQELVQA VKAEDVGTAQ RLLQRPRPG- --KAKLLGST KKINVNFQDP ENSP00000345436/1-1431 MGKEQELVQA VKAEDVGTAQ RLLQRPRPG- --KAKLLGST KKINVNFQDP ENSBTAP00000049651/1-1413 ---------- ---------- ---------- ---AELLGST KKINVNFQDP bmy_02713T0/1-1306 --------LE GAGTQVGLSR GWTEPPSPCL LPTPELLGST KKINVNFQDP BACU009206/1-1366 ---------- ---------- ---------- ----ELLGST KKINVNFQDP 51 100 ENSTTRP00000007753/1-1435 DGFSALHHAA LNGNTELITL LLEAQAAVDI KDNK------ --------GM ENSP00000345436/1-1431 DGFSALHHAA LNGNTELISL LLEAQAAVDI KDNK------ --------GM ENSBTAP00000049651/1-1413 DGFSALHHAA LNGNTELITL LLEAQAAVDI KDNK------ --------GM bmy_02713T0/1-1306 DGFSALHHAA LNGNTELITL LLEAQAAVDI KDNK------ --------GM BACU009206/1-1366 DGFSALHHAA LNGNTELITL LLEAQAAVDI KDNKGKAWAS SQPPPLPPGM 101 150 ENSTTRP00000007753/1-1435 RPLHYAAWQG RKEPMKLVLK AGSAVNVPSD EGHIPLHLAA QHGHYDVSEM ENSP00000345436/1-1431 RPLHYAAWQG RKEPMKLVLK AGSAVNIPSD EGHIPLHLAA QHGHYDVSEM ENSBTAP00000049651/1-1413 RPLHYAAWQG RKEPMKLVLK AGSAVNIPSD EGHIPLHLAA QHGHYDVSEM bmy_02713T0/1-1306 RPLHYAAWQG RKEPMKLVLK AGSAVNVPSD EGHIPLHLAA QHGHYDVSEM BACU009206/1-1366 RPLHYAAWQG RKEPMKLVLK AGSAVNVPSD EGHIPLHLAA QHGHYDVSEM 151 200 ENSTTRP00000007753/1-1435 LLQHQSNPCM VDNSGKTPLD LACEFGRVGV VQLLLSSNMC AALLEPRPGD ENSP00000345436/1-1431 LLQHQSNPCM VDNSGKTPLD LACEFGRVGV VQLLLSSNMC AALLEPRPGD ENSBTAP00000049651/1-1413 LLQHQSNPCM VDNSGKTPLD LACEFGRVGV VQLLLSSNMC TALLEPRPGD bmy_02713T0/1-1306 LLQHQSNPCM VDNSGKTPLD LACEFGRVGV VQLLLSSNMC AALLEPRPGD BACU009206/1-1366 LLQHQSNPCM VDNSGKTPLD LACEFGRVGV VQLLLSSNMC AALLEPRPGD 201 250 ENSTTRP00000007753/1-1435 TTNPNGTSPL HLAAKNGHID IITLLLQAGI DINRQTKSGT ALHEAALCGK ENSP00000345436/1-1431 ATDPNGTSPL HLAAKNGHID IIRLLLQAGI DINRQTKSGT ALHEAALCGK ENSBTAP00000049651/1-1413 TTDPNGTSPL HLAAKNGHID IIRLLLQAGI DINRQTKSGT ALHEAALCGK bmy_02713T0/1-1306 TTDPNGTSPL HLAAKNGHID IIRLLLQAGI DINRQTKSGT ALHEAALCGK BACU009206/1-1366 TTDPNGTSPL HLAAKNGHID IIRLLLQAGI DINRQTKSGT ALHEAALCGK 251 300 ENSTTRP00000007753/1-1435 TEVVRLLLDN GINAHVRNTY SQTALDIVHQ FTTSQASKEI KQLLREASAA ENSP00000345436/1-1431 TEVVRLLLDS GINAHVRNTY SQTALDIVHQ FTTSQASREI KQLLREASAA ENSBTAP00000049651/1-1413 TEVVRLLLDN GINAHVRNTY SQTALDIVHQ FTTSQASKEI KQLLREASAA bmy_02713T0/1-1306 TEVVRLLLDN GINAHVRNTY SQTALDIVHQ FTTSQASKEI KQLLREASAA BACU009206/1-1366 TEVVRLLLDN GINAHVRNTY SQTALDIVHQ FTTSQASKEI KQLLPEASAA 301 350 ENSTTRP00000007753/1-1435 LQVRATKDYC NNYDLTSLNV KAGDIITVLE QHPDGRWKGC IHDNRTGNDR ENSP00000345436/1-1431 LQVRATKDYC NNYDLTSLNV KAGDIITVLE QHPDGRWKGC IHDNRTGNDR ENSBTAP00000049651/1-1413 LQVRATKDYC NNYDLTSLNV KAGDIITVLE QHPDGRWKGC IHDNRTGNDR bmy_02713T0/1-1306 LQVRATKDYC NNYDLTSLNV KAGDIITVLE QHPDGRWKGC IHDNRTGNDR BACU009206/1-1366 LQVRATKDYC NNYDLTSLNV KAGDIITVLE QHPDGRWKGC IHDNRTGNDR 351 400 ENSTTRP00000007753/1-1435 VGYFPSSLGE AIIKRAGSRA GAEPSPPQGC SSAGPSAPPE EIWVLRKPFA ENSP00000345436/1-1431 VGYFPSSLGE AIVKRAGSRA GTEPSLPQGS SSSGPSAPPE EIWVLRKPFA ENSBTAP00000049651/1-1413 VGYFPSSLGE AIVKRAGPRA GAEPSPPQGG SSAGPTVPPE EIWVLRKPFA bmy_02713T0/1-1306 VGYFPSSLGE AIVKRAGSRA GAEPSPPQGG SSAGPSAPPE EIWVLRKPFT BACU009206/1-1366 VGYFPSSLGE AIVKRAGSRA GAEPSPPQGG SSAGPSAPPE EIWVLRKPFT 401 450 ENSTTRP00000007753/1-1435 GGDRSGSLSS VASGRSSGGH TLHAGSEGVK LLATVLSQKS VSDSSPGDSP ENSP00000345436/1-1431 GGDRSGSISG MAGGRGSGGH ALHAGSEGVK LLATVLSQKS VSESGPGDSP ENSBTAP00000049651/1-1413 GGDRSGSLSS AAGGRSVGGH TLHAGSEGVK LLATVLSQKP VSDSSPGDSP bmy_02713T0/1-1306 GGDRSGSLSS VASGRSSGGH TLHAGSEGVK LLATVLSQKS VSDSSPGDSP BACU009206/1-1366 GGDRSGSLSS VASGRSSGGH TLHAGSEGVK LLATVLSQKS VSDSSPGDSP 451 500 ENSTTRP00000007753/1-1435 VKPPEGSSGA TRSQTPVTHA GQVYGEQPSK KLETASEGK- -------GAE ENSP00000345436/1-1431 AKPPEGSAGV ARSQPPVAHA GQVYGEQPPK KLEPASEGK- -------SSE ENSBTAP00000049651/1-1413 VKPPEGPAAA TRAQPPAAHA GPGYGEQPPK KLEAASEGK- -------GAE bmy_02713T0/1-1306 VKPPEGSSGA TRSQTPVTHA GQVYGEQPPK KLEAASEGK- -------GAE BACU009206/1-1366 VKPPEGSSGA TRSQTPVTHA GQVYGEQPPK KLEAASEGKV QGLGRLQGAE 501 550 ENSTTRP00000007753/1-1435 AVSQWLATFQ LQLYAPNFIS AGYDLPTISR MTPEDLTAIG VTKPGHRKKI ENSP00000345436/1-1431 AVSQWLTAFQ LQLYAPNFIS AGYDLPTISR MTPEDLTAIG VTKPGHRKKI ENSBTAP00000049651/1-1413 AVSQWLATFQ LQLYAPNFIS AGYDLPTISR MTPEDLTAIG VTKPGHRKKI bmy_02713T0/1-1306 AVSQWLATFQ LQLYAPNFIS AGYDLPTISR MTPEDLTAIG VTKPGHRKKI BACU009206/1-1366 AVSQWLATFQ LQLYAPNFIS AGYDLPTISR MTPEDLTAIG VTKPGHRKKI 551 600 ENSTTRP00000007753/1-1435 TAEISGLSIP DWLPEHKPAN LAMWLSMIGL AQYYKVLVDN GYENIDFITD ENSP00000345436/1-1431 AAEISGLSIP DWLPEHKPAN LAVWLSMIGL AQYYKVLVDN GYENIDFITD ENSBTAP00000049651/1-1413 TAEISGLSLP DWLPEHKPAN LAVWLSMIGL AQYYKVLVDN GYENIDFITD bmy_02713T0/1-1306 TAEISGLSIP DWLPEHKPAN LAVWLSMIGL AQYYKVLVDN GYENIDFITD BACU009206/1-1366 TAEISSLSIP DWLPEHKPAN LAVWLSMIGL AQYYKVLVDN GYENIDFITD 601 650 ENSTTRP00000007753/1-1435 ITWEDLQEIG ITKLGHQKKL MLAVRKLAEL QKAEYAKYEG GPLRRKVPQS ENSP00000345436/1-1431 ITWEDLQEIG ITKLGHQKKL MLAVRKLAEL QKAEYAKYEG GPLRRKAPQS ENSBTAP00000049651/1-1413 ITWGDLQEIG ITKLGHQKKL MLAVRKLAEL QKAEYAKYEG GPLRRKAPQS bmy_02713T0/1-1306 ITWEDLQEIG ITKLGHQKKL MLAVRKLAEL QKAEYAKYEG GPLRRKVPQS BACU009206/1-1366 ITWEDLQEIG ITKLGHQKKL MLAVRKLAEL QKAEYAKYEG GPLRRKVPQS 651 700 ENSTTRP00000007753/1-1435 LEVMAIESPP PPEPAPADCQ SPKMTTFQDS ELSGELQAAL TGPAE-GP-- ENSP00000345436/1-1431 LEVMAIESPP PPEPTPADCQ SPKMTTFQDS ELSDELQAAM TGPAEVGP-- ENSBTAP00000049651/1-1413 LEVMAIESPP PPEPAPADCQ SPKMTTFQDS ELSGELQAAL TGPAE-GAAA bmy_02713T0/1-1306 LEVMAIESPP PPEPAPADCQ SPKMTTFQDS ELSGELQAAL TGPAE-GAAA BACU009206/1-1366 LEVMAIESPP PPEPAPADCQ SPKMTTFQDS ELSGELQAAL TGPAE-GAAA 701 750 ENSTTRP00000007753/1-1435 ---PTEKPSN HLPPTPRASM RQEPSLGGRA RHMSSSQELL GDGPPGPGSP ENSP00000345436/1-1431 ---TTEKPSS HLPPTPRATT RQDSSLGGRA RHMSSSQELL GDGPPGPSSP ENSBTAP00000049651/1-1413 ATAPAEKPAN HLPPTPRASG RQEPSLGGRA RHMSSSQELL GDGPPGPSSP bmy_02713T0/1-1306 AAAPTEKPSN HLPPTPRASM RQEPSLGGRA RHMSSSQELL GDGPPGPGSP BACU009206/1-1366 AAAPTEKPSN HLPPTPRASM RQEPSLGGRA RHMSSSQELL GDGPPGPGSP 751 800 ENSTTRP00000007753/1-1435 MSRSQEYLLE EGPAPGTPPK EARPSRHGHS VKRASVPPVP GKPRQVLPPG ENSP00000345436/1-1431 MSRSQEYLLD EGPAPGTPPR EARPGRHGHS IKRASVPPVP GKPRQVLPPG ENSBTAP00000049651/1-1413 MSRSQEYLLD EGPAPGTPPK EARPSRHGHS VKRASVPPVP GKPRQVLPPG bmy_02713T0/1-1306 MSRSQEYLLE EGPAPGTPPK EARPSRHGHS VKRASVPPVP GKPRQVLPPG BACU009206/1-1366 MSRSQEYLLE EGPALGTPPK EARPSRHGHN VKRASVPPVP GKPRQVLPPG 801 850 ENSTTRP00000007753/1-1435 TSHFTPPQTP TKARPGSPQA LGGPHGPAPA TAKVKPTPQL LPPMERPMSP ENSP00000345436/1-1431 TSHFTPPQTP TKTRPGSPQA LGGPHGPAPA TAKVKPTPQL LPPTERPMSP ENSBTAP00000049651/1-1413 ASHFTPPQTP TKPRPSSPQA LGGPHGPAPA TAKVKPTPQL LPPTERPMSP bmy_02713T0/1-1306 TSHFTPPQTP TKARPGSPQA LGGPHGPAPA TAKVKPTPQL LPPMERPMSP BACU009206/1-1366 TGHFTPPQTP TKARPGSPQA LGGPHGPAPA TAKVKPTPQL LPPMERPMSP 851 900 ENSTTRP00000007753/1-1435 RSLPQSPTHR GFAYVLPQPV ESETGPAAPG PAPAAMPTPV PTLCLPPEAD ENSP00000345436/1-1431 RSLPQSPTHR GFAYVLPQPV EGEVGPAAPG PAPPPVPTAV PTLCLPPEAD ENSBTAP00000049651/1-1413 RSLPQSPTHR GFAYVLPQPV ESEAGPAAPG PAPAAVPTPV PTLCLPPEAD bmy_02713T0/1-1306 RSLPQSPTHR GFAYVLPQPV ESEAGPAAPG PAPAAVPVPV PTLCLPPEAD BACU009206/1-1366 RSLPQSPTHR GFAYVLPQPV ESEAGPAAPG PAPAAVPAPV PTLCLPPEAD 901 950 ENSTTRP00000007753/1-1435 MESGRPKKRA HSLNRYAASD SEPERDELLV PATVGPYATV QRRVGRSHSV ENSP00000345436/1-1431 AEPGRPKKRA HSLNRYAASD SEPERDELLV PAAAGPYATV QRRVGRSHSV ENSBTAP00000049651/1-1413 AEPGRPKKRA HSLNRYAASD SEPERDELLV PAAAGPYATV QRRVGRSHSV bmy_02713T0/1-1306 VEPGRPKKRA HSLNRYAASD SEPERDELLV PATAGPYATV QRRVGRSHSV BACU009206/1-1366 MEPGRPKKRA HSLNRYAASD SEPERDELLV PATVGPYATV QRRVGRSHSV 951 1000 ENSTTRP00000007753/1-1435 RAPAGADKNV NRSQSFAVRP RKKGPPPPPP KRSSSSMASA NLADESVPDA ENSP00000345436/1-1431 RAPAGADKNV NRSQSFAVRP RKKGPPPPPP KRSSSALASA NLADEPVPDA ENSBTAP00000049651/1-1413 RAPAGADKNV NRSQSFAVRP RKKGPPPPPP KRSSSAMASA NLADEPAPDA bmy_02713T0/1-1306 RAPAGADKNV NRSQSFAVRP RKKGPPPPPP KRSSSAMASA NLADESVPDA BACU009206/1-1366 RAPAGADKNV NRSQSFAVRP RKKGPPPPPP KRSSSAMASA NLADESVPDA 1001 1050 ENSTTRP00000007753/1-1435 ETEVAGAEDG RLGVRAQRRR ASDLAGSVDT GSAGSVKSIA AMLELSSIGG ENSP00000345436/1-1431 E-----PEDG LLGVRAQCRR ASDLAGSVDT GSAGSVKSIA AMLELSSIGG ENSBTAP00000049651/1-1413 ETEGAGAEDG RLGVRAQRRR ASDLAGSVDT GSAGSVKSIA AMLELSSIGG bmy_02713T0/1-1306 ETEGAGTEDG RLGVRAQRRR ASDLAGSVDT GSAGSVKSIA AMLELSSIGG BACU009206/1-1366 ETEGAGTEDG RLGVRAQRRR ASDLAGSVDT GSAGSVKSIA AMLELSSIGG 1051 1100 ENSTTRP00000007753/1-1435 GGRAARRPPE GHPMLRPASP EPGRVATVLA SVKHKEAIGP DGEVVNRRRT ENSP00000345436/1-1431 GGRAARRPPE GHPTPRPASP EPGRVATVLA SVKHKEAIGP GGEVVNRRRT ENSBTAP00000049651/1-1413 GGRAARRPPE GHPMPHPASP EPGRVATVLA SVKHKEAIGP DGEVVNRRRT bmy_02713T0/1-1306 GGRAARRPPE GHPMLRPASP EPGRVATVLA SVKHKEAIGP DGEVVNRRRT BACU009206/1-1366 GGRAARRDPE GHPMLRPASP EPGRVATVLA SVKHKEAIGP DGEVVNRRRT 1101 1150 ENSTTRP00000007753/1-1435 LSGPVTGLLA TARRGPGEPG GPADHGHVVE DGATRQRPRG PAKGEAGVEG ENSP00000345436/1-1431 LSGPVTGLLA TARRGPGESA DP---GPFVE DGTGRQRPRG PSKGEAGVEG ENSBTAP00000049651/1-1413 LSGPVTGLLA TARRGSGEPA GPADHGQLVE EGAARQRPRG PAKGEAGAEG bmy_02713T0/1-1306 LSGPVTGLLA TARRGPGEAG GPADHGHFVE DGATRQRPRG PAKGEAGVEG BACU009206/1-1366 LSGPVTGLLA TARRGPGEPG GPADHGHFVE DGATRQRPRG PAKGEAGVEG 1151 1200 ENSTTRP00000007753/1-1435 PPLARVEASA TLKRRIRAKQ SQQENVKFIL TESDTVKRGP KAKEREAGPE ENSP00000345436/1-1431 PPLAKVEASA TLKRRIRAKQ NQQENVKFIL TESDTVKRRP KAKEREAGPE ENSBTAP00000049651/1-1413 PPLARVEASA TLKRRIRAKQ SQQENVKFIL TESDTVKRRP KVKEREAGPE bmy_02713T0/1-1306 PPLARVEASA TLKRRIRAKQ SQQENVKFIL TESDTVKRRP KAKEREAGPE BACU009206/1-1366 PPLARVEASA TLKRRIRAKQ SQQENVKFIL TESDTVKRRP KAKEREAGPE 1201 1250 ENSTTRP00000007753/1-1435 PPLPPLSVY- NGTGTVRRRP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000345436/1-1431 PP-PPLSVYH NGTGTVRRRP ASEQAGPPEL PPPPPPAEPP PTDLAHLPPL ENSBTAP00000049651/1-1413 PPPPPLSVYQ NGTGTVRRRP ASEQAGPPEL PPPPPPAEPP PSDLMHLPPL bmy_02713T0/1-1306 PPLPPLSVYQ NGTGTVRRRP ASEQAGPPEL PPPPPPAEPP PSDLLHLPPL BACU009206/1-1366 PPLPPLSVYQ NGTGTVRRRP ASEQAGPPEL PPPPPPAEPP PSDLLHLPPL 1251 1300 ENSTTRP00000007753/1-1435 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000345436/1-1431 PPPEGEARKP AKPPVSPKPV LTQPVPKLQG SPTPTSKKVP LPGPGSPEVK ENSBTAP00000049651/1-1413 PPPDSDARKL AKPPVSPKPI LAQPVPKIQG SPTPASKKVP LPGPSSPEVK bmy_02713T0/1-1306 PPPDSDARKP AKPPVSPKPI LAQPVPKIQG SPTPASKKVP LSGPGSP--- BACU009206/1-1366 PPPDSDARKP AKPPVSPKPI LAQPVPKIQG SPTPASKKVP LPGPGSP--- 1301 1350 ENSTTRP00000007753/1-1435 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000345436/1-1431 RAHGTPPPVS PKPPPPPTAP KPVKAVAGLP SGSAGPSPAP SPARQPPAAL ENSBTAP00000049651/1-1413 RAHGTPPPVS PKPPPPPTAP KPAKAAAGLQ SGSSSPSPAP SPARQQPAAL bmy_02713T0/1-1306 -VHAAP---- ---------- ---------- ----APSPSA AE-------- BACU009206/1-1366 -VHAAP---- ---------- ---------- ----APSSSA AEEKSTGSIL 1351 1400 ENSTTRP00000007753/1-1435 XXXXXXXHPS LS----SPAR PPSPGAAFVL HVPAKPPR-- --AAAAVAGP ENSP00000345436/1-1431 AKPPGTP-PS LG---ASPAK PPSPGAP-AL HVPAKPPRAA AAAAAAAAAP ENSBTAP00000049651/1-1413 AKPASTP-PA LSASPASPAR PPSPGAP-AL HVPAKPPR-- --AAAAATGP bmy_02713T0/1-1306 ---------- ---------- ---------- ---------- ---------- BACU009206/1-1366 DDIGSMF-DD LA-------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000007753/1-1435 PAAPDGASPG DSARQKLEET SACLAAALQA VEEKIRQEDA QGSRPSAA-E ENSP00000345436/1-1431 PAPPEGASPG DSARQKLEET SACLAAALQA VEEKIRQEDA QGPRDSAA-E ENSBTAP00000049651/1-1413 PAAPDGASPG DSARQKLEET SACLAAALQA VEEKIRQEDA QGSRPSAA-E bmy_02713T0/1-1306 ---------- ---------- ---------- ---------- ---------E BACU009206/1-1366 ----DQLDAM LDARQKLEET SACLAAALQA VEEKIRQEDA QGSRSSAAEE 1451 1500 ENSTTRP00000007753/1-1435 KSTGSILDDI GSMFDDLADQ LDAMLE ENSP00000345436/1-1431 KSTGSILDDI GSMFDDLADQ LDAMLE ENSBTAP00000049651/1-1413 KSTGSILDDI GSMFDDLADQ LDAMLE bmy_02713T0/1-1306 KSTGSILDDI GSMFDDLADQ LDAMLE BACU009206/1-1366 ESTGSILDDI GSMFDDLADQ LDAMLE