KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:54 2014 Check: 00 .. Name: ENSTTRP00000003713/1-242 Len: 244 Check: 6846 Weight: 1.00 Name: ENSBTAP00000049659/1-242 Len: 244 Check: 3556 Weight: 1.00 Name: ENSP00000281243/1-244 Len: 244 Check: 2891 Weight: 1.00 Name: bmy_13838T0/1-138 Len: 244 Check: 4689 Weight: 1.00 Name: BACU012524/1-242 Len: 244 Check: 2364 Weight: 1.00 // 1 50 ENSTTRP00000003713/1-242 --MAAVAGET RRVLVYGGRG ALGSRCVQAF RARNWWVASI DVVENEEASA ENSBTAP00000049659/1-242 --MAAAAGEA RRVLVYGGRG ALGSRCVQAF RARNWWVASI DVQENEEASA ENSP00000281243/1-244 MAAAAAAGEA RRVLVYGGRG ALGSRCVQAF RARNWWVASV DVVENEEASA bmy_13838T0/1-138 ---------- ---------- ---------- ---------- ---------- BACU012524/1-242 --MAAVAGET RRVLVYGGRG ALGSRCVQAF RARNWWVASI DVVENEEASA 51 100 ENSTTRP00000003713/1-242 SVLVKMTDSF TEQADQVTAE VGKLLGAEKV DAILCVAGGW AGGNAKSKSL ENSBTAP00000049659/1-242 NVVVKMTDSF TEQADQVTAE VGKLLGTEKV DAILCVAGGW AGGNAKSKSL ENSP00000281243/1-244 SIIVKMTDSF TEQADQVTAE VGKLLGEEKV DAILCVAGGW AGGNAKSKSL bmy_13838T0/1-138 ---------- ---------- ---------- ---------- ---------- BACU012524/1-242 SVLVKMTDSF TEQADQVTAE VGKLLGAEKV DAILCVAGGW AGGNAKSKSL 101 150 ENSTTRP00000003713/1-242 FKNCDLMWKQ SIWTSTISSH LATKHLKEGG LLTLAGAKAA LDGTPGMIGY ENSBTAP00000049659/1-242 FKNCDLMWKQ SVWTSTISSH LATKHLKEGG LLTLAGARAA LDGTPGMIGY ENSP00000281243/1-244 FKNCDLMWKQ SIWTSTISSH LATKHLKEGG LLTLAGAKAA LDGTPGMIGY bmy_13838T0/1-138 ------MWKQ SMWTSTISSH LATKHLKEGG LLTLAGAKAA LDGTPGMIGY BACU012524/1-242 FKNCDLMWKQ SMWTSTISSH LATKHLKEGG LLTLAGAKAA LDGTPGMIGY 151 200 ENSTTRP00000003713/1-242 GMAKGAVHQL CQSLAGKDSG MPSGSAAIAV LPXXXXXXXX XXXXXXXXXX ENSBTAP00000049659/1-242 GMAKAAVHQL CQSLAGKSSG LPPGAAAVAL LPVTLDTPVN RKSMPEADFS ENSP00000281243/1-244 GMAKGAVHQL CQSLAGKNSG MPPGAAAIAV LPVTLDTPMN RKSMPEADFS bmy_13838T0/1-138 GMAKGAVHQL CQSLAGKDSG MPSGSAAIAV LPVTLDTPMN RKSMPEADFS BACU012524/1-242 GMAKGAVHQL CQSLAGKDSG MPSGSAAIAV LPVTLDTPMN RKSMPEADFS 201 250 ENSTTRP00000003713/1-242 XXXXLEFLVE TFHDWITEKN RPSSGSLIQV VTTKGRTELT PAYF ENSBTAP00000049659/1-242 SWTPLEFLVE TFHDWITEKN RPSSGSLIQV VTTEGKTELT AASP ENSP00000281243/1-244 SWTPLEFLVE TFHDWITGKN RPSSGSLIQV VTTEGRTELT PAYF bmy_13838T0/1-138 SWTPLEFLVE TFHDWITEKN RPSSGSLIQV VTTKGRTELT PAYF BACU012524/1-242 SWTPLEFLVE TFHDWITEKN RPSSGSLIQV VTTKGRTELT PAYF