KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:55 2014 Check: 00 .. Name: ENSTTRP00000009609/1-794 Len: 860 Check: 5531 Weight: 1.00 Name: ENSP00000445905/1-805 Len: 860 Check: 6758 Weight: 1.00 Name: ENSBTAP00000049706/1-807 Len: 860 Check: 7244 Weight: 1.00 Name: bmy_11780T0/1-847 Len: 860 Check: 5175 Weight: 1.00 Name: BACU002541/1-631 Len: 860 Check: 5176 Weight: 1.00 // 1 50 ENSTTRP00000009609/1-794 MASPTLSPDS SSQEALSAPT CSPTSDSENL SPDELELLAK LEEQNRLLEA ENSP00000445905/1-805 MASPTLSPDS SSQEALSAPT CSPTSDSENL SPDELELLAK LEEQNRLLEA ENSBTAP00000049706/1-807 MASPTLSPDS SSQEALSAPT CSPTSDSENL SPDELELLAK LEEQNRLLEA bmy_11780T0/1-847 MASPTLSPDS SSQEALSGPT CSPTSDSENL SPDELELLAK LEEQNRLLEA BACU002541/1-631 MASPTLSPDS SSQEALSGPT CSPTSDSENL SPDELELLAK LEEQNRLLEA 51 100 ENSTTRP00000009609/1-794 DSKSMRSMNG SRRNSGSSLV SSSSASSNLS HLEEDTWILW GRIANEWEEW ENSP00000445905/1-805 DSKSMRSMNG SRRNSGSSLV SSSSASSNLS HLEEDTWILW GRIANEWEEW ENSBTAP00000049706/1-807 DSKSMRSMNG SRRNSGSSLV SSSSASSNLS HLEEDTWILW GRIANEWEEW bmy_11780T0/1-847 DSKSMRSMNG SRRNSGSSLV SSSSASSNLS HLEEDTWILW GRIANEWEEW BACU002541/1-631 DSKSMRSMNG SRRNSGSSLV SSSSASSNLS HLEEDTWILW GRIANEWEEW 101 150 ENSTTRP00000009609/1-794 RRRKEKLLKE LIRKGIPHHF RAIVWQLLCS ATDMPVKNQY SELLKMSSPC ENSP00000445905/1-805 RRRKEKLLKE LIRKGIPHHF RAIVWQLLCS ATDMPVKNQY SELLKMSSPC ENSBTAP00000049706/1-807 RRRKEKLLKE LIRKGIPHHF RAIVWQLLCS ATDMPVKNQY SELLKMSSPC bmy_11780T0/1-847 RRRKEKLLKE LIRKGIPHHF RAIVWQLLCS ATDMPVKNQY SELLKMSSPC BACU002541/1-631 RRRKEKLLKE LIRKGIPHHF RAIVWQLLCS ATDMPVKNQY SELLKMSSPC 151 200 ENSTTRP00000009609/1-794 EKLIRRDIAR TYPEHEFFKG QDSLGQEVLF NVMKAYSLVD REVGYCQGSA ENSP00000445905/1-805 EKLIRRDIAR TYPEHEFFKG QDSLGQEVLF NVMKAYSLVD REVGYCQGSA ENSBTAP00000049706/1-807 EKLIRRDIAR TYPEHEFFKG QDSLGQEVLF NVMKAYSLVD REVGYCQGSA bmy_11780T0/1-847 EKLIRRDIAR TYPEHEFFKG QDSLGQEVLF NVMKAYSLVD REVGYCQGSA BACU002541/1-631 EKLIRRDIAR TYPEHEFFKG QDSLGQEVLF NVMKAYSLVD REVGYCQGSA 201 250 ENSTTRP00000009609/1-794 FIVGLLLMQM PEEEAFCVFV RLMQEYRLRE LFKPSMAELG LCIYQFEYML ENSP00000445905/1-805 FIVGLLLMQM PEEEAFCVFV RLMQEYRLRE LFKPSMAELG LCIYQFEYML ENSBTAP00000049706/1-807 FIVGLLLMQM PEEEAFCVFV RLMQEYRLRE LFKPSMAELG LCIYQFEYML bmy_11780T0/1-847 FIVGLLLMQM PEEEAFCVFV RLMQEYRLRE LFKPSMAELG LCIYQFEYML BACU002541/1-631 FIVGLLLMQM PEEEAFCVFV RLMQEYRLRE LFKPSMAELG LCIYQFEYML 251 300 ENSTTRP00000009609/1-794 QEQLPDLNTH FRSQSFHTSM YASSWFLTLF LTTFPLPVAT RVFDIFMYEG ENSP00000445905/1-805 QEQLPDLNTH FRSQSFHTSM YASSWFLTLF LTTFPLPVAT RVFDIFMYEG ENSBTAP00000049706/1-807 QEQLPDLNTH FRSQSFHTSM YASSWFLTLF LTTFPLPVAT RVFDIFMYEG bmy_11780T0/1-847 QEQLPDLNTH FRSQSFHTSM YASSWFLTLF LTTFPLPVAT RVFDIFMYEG BACU002541/1-631 QEQLPDLNTH FRSQSFHTSM YASSWFLTPF LTTFPLPVAT RVFDIFMYEG 301 350 ENSTTRP00000009609/1-794 LEIVFRVGLA LLQVNQMELM QXXXXXXXXY FQRVIPHQFD SCPDKLILKA ENSP00000445905/1-805 LEIVFRVGLA LLQVNQAELM QLDMEGMSQY FQRVIPHQFD SCPDKLVLKA ENSBTAP00000049706/1-807 LEIIFRVGLA LLQVNQTELM QLDMEGMSQY FQRVIPHQFD SCPDKLILKA bmy_11780T0/1-847 LEIVFRVGLA LLQVNQMELM QLDMEGMSQY FQRVIPHQFD SCPDKLILKA BACU002541/1-631 LEIVFRVGLA LLQVNQMELM QLDMEGMSQY FQRVIPHQFD SCPDKLILKA 351 400 ENSTTRP00000009609/1-794 YQVKYNPKKM KRLEKEYAAM KSKEMEEQIE IKRLRTENRL LKQRIETLEK ENSP00000445905/1-805 YQVKYNPKKM KRLEKEYAAM KSKEMEEQIE IKRLRTENRL LKQRIETLEK ENSBTAP00000049706/1-807 YQVKYNPKKM KRLEKEYAAM KSKEMEEQIE IKRLRTENRL LKQRIETLEK bmy_11780T0/1-847 YQVKYNPKKM KRLEKEYAAM KSKEMEEQIE IKRLRTENRL LKQRIETLEK BACU002541/1-631 YQVKYNPKKM KRLEKEYAAM KSKEMEEQIE IKRLRTENRL LKQRIETLEK 401 450 ENSTTRP00000009609/1-794 ---------- -GQVTRAQEA EENYVIKREL AVVRQQCSSA AQDLQKAQST ENSP00000445905/1-805 ESAALADRLI QGQVTRAQEA EENYVIKREL AVVRQQCSSA AEDLQKAQST ENSBTAP00000049706/1-807 ESAALADRLI QGQVTRAQEA EENYVIKREL AVVRQQCSSA AEDLQKAQST bmy_11780T0/1-847 ---------- -GQVTRAQEA EENYVIKREL AVVRQQCSSA AEDLQKAQST BACU002541/1-631 ---------- -GQVTRAQEA EENYVIKREL AVVRQQCSSA AEDLQKAQST 451 500 ENSTTRP00000009609/1-794 IRQLQEQQDN PRLTEDFVAH LETELEQSRL RETETLGALR EMQDKVLDME ENSP00000445905/1-805 IRQLQEQQEN PRLTEDFVSH LETELEQSRL RETETLGALR EMQDKVLDME ENSBTAP00000049706/1-807 IRQLQEQQDN PRLTEDFVAH LETELEQSRL RETETLGALR EMQDKVLDME bmy_11780T0/1-847 IRQLQEQQDN PRLTEDFVAH LETELEQSRL RETETLGALR EMQDKVLDME BACU002541/1-631 IRQLQEQQDN PRLTEDFVAH LETELEQSRL RETETLGALR EMQDKVLDME 501 550 ENSTTRP00000009609/1-794 KRNSSLPDEN NVAQLQEELK ALKVREGEAV ASARELKMQL QELSDTWQ-- ENSP00000445905/1-805 KRNSSLPDEN NVAQLQEELK ALKVREGQAV ASTRELKLQL QELSDTWQ-- ENSBTAP00000049706/1-807 KRNNSLPDEN NVARLQEELK ALKVREGEAV ASARELKLQL QELSDTWQ-- bmy_11780T0/1-847 KRNSSLPDEN NVARLQEELK ALKVREGEAV ASARELKLQL QELSDTWQVR BACU002541/1-631 KRNSSLPDEN NVARLQEELK ALKVREGEAV ASARELKLQL QELSDTWQ-- 551 600 ENSTTRP00000009609/1-794 ---------- ---------- -----AHLSR GGRWKESPRK LVLGELQDEL ENSP00000445905/1-805 ---------- ---------- -----AHLAR GGRWKESPRK LVVGELQDEL ENSBTAP00000049706/1-807 ---------- ---------- -----AHLSR GGRWKESPRK LVLGELQDEL bmy_11780T0/1-847 EGLVRRARSG LGAPRRRPTA DLSPQAHLSR GGRWKESPRK LVVGELQDEL BACU002541/1-631 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000009609/1-794 MSVRLREAQA VAEGRELRQR VMELETQDHI HRNLLNRVEA ERAALQEKLQ ENSP00000445905/1-805 MSVRLREAQA LAEGRELRQR VVELETQDHI HRNLLNRVEA ERAALQEKLQ ENSBTAP00000049706/1-807 MSVRLREAQA LAEGRELRQR VVELETQDHI HRNLLNRVEA ERAALQEKLQ bmy_11780T0/1-847 MSVRLREAQA LAEGRELRQR VVELETQDHI HRNLLNRVEA ERAALQEKLQ BACU002541/1-631 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000009609/1-794 YLAAQNKGLQ TQLSESRRKQ AEAECK---- ---------- ---------- ENSP00000445905/1-805 YLAAQNKGLQ TQLSESRRKQ AEAECK---- ---------- ---------- ENSBTAP00000049706/1-807 YLAAQNKGLQ TQLSESRRKQ AEAECK---- ---------- ---------- bmy_11780T0/1-847 YLAAQNKGLQ TQLSESRRKQ AEAECKVPRP RPRARAPARP AAPRDRLSPR BACU002541/1-631 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000009609/1-794 --SKEEVMAV RLREADSMAA VAEMRQRIAE LEIQREEGRI QGQLNHSDSS ENSP00000445905/1-805 --SKEEVMAV RLREADSMAA VAEMRQRIAE LEIQREEGRI QGQLNHSDSS ENSBTAP00000049706/1-807 --SKEEVMAV RLREADSMAA VAEMRQRIAE LEIQREEGRI QGQLNHSDSS bmy_11780T0/1-847 PQSKEEVMAV RLREADSMAA VAEMRQRIAE LEIQREEGRI QGQLNHSDSS BACU002541/1-631 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000009609/1-794 QYIRELKDQI EELKAEVRLL KGPPPFEDPL AFDGLGLARH LDEDSLPSSD ENSP00000445905/1-805 QYIRELKDQI EELKAEVRLL KGPPPFEDPL AFDGLSLARH LDEDSLPSSD ENSBTAP00000049706/1-807 QYIRELKDQI EELKAEVRLL KGPPPFEDPL AFDGLGLARH LDEDSLPSSD bmy_11780T0/1-847 QYIRELKDQI EELKAEVRLL KGPPPFEDPL AFDGLGLARH LDEDSLPSSD BACU002541/1-631 ---------- ------VRLL KGPPPFEDPL AFDGLGLARH LDEDSLPSSD 801 850 ENSTTRP00000009609/1-794 EELL--SVGV GAALQDALYP LSPRDARFFR RLERPAKDSE GSSDSDADEL ENSP00000445905/1-805 EELL--GVGV GAALQDALYP LSPRDARFFR RLERPAKDSE GSSDSDADEL ENSBTAP00000049706/1-807 EELLGVGVGV GAALQDALYP LSPRDARFFR RLERPAKDSE GSSDSDADEL bmy_11780T0/1-847 EELL--GVGV GAALQDALYP LSPRDARFFR RLERPAKDSE GSSDSDADEL BACU002541/1-631 EELLGVGVGV GAALQDALYP LSPRDARFFR RLERPAKDSE GSSDSDADEL 851 900 ENSTTRP00000009609/1-794 AAPYSQGLDN ENSP00000445905/1-805 AAPYSQGLDN ENSBTAP00000049706/1-807 AAPYSQGLDN bmy_11780T0/1-847 AAPYSQGLDN BACU002541/1-631 AAPYSQGLDN