KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:55 2014 Check: 00 .. Name: ENSP00000384434/1-271 Len: 284 Check: 1006 Weight: 1.00 Name: ENSBTAP00000049710/1-276 Len: 284 Check: 7325 Weight: 1.00 Name: ENSTTRP00000009047/1-236 Len: 284 Check: 8149 Weight: 1.00 Name: bmy_13751T0/1-224 Len: 284 Check: 2549 Weight: 1.00 Name: BACU002502/1-273 Len: 284 Check: 7220 Weight: 1.00 // 1 50 ENSP00000384434/1-271 MTEPQVGCVA CPRVHKEPAQ VGTPWPAKPR SHPRKRDPTA LLP--RSLWP ENSBTAP00000049710/1-276 MEAEPAPDFA MLRELLAPPC LNPEPPPEPP IRQAPRTPGC LRPSGRSFWP ENSTTRP00000009047/1-236 ---------- ---------- ---------- -----GDRTA LVP--RSFWP bmy_13751T0/1-224 ---------- MLRELLTPPC LDPEPPPELP TQQAPRTPGC LRPSGRSFWP BACU002502/1-273 MEAEPAPDLS MLRELLTPPC LDPEPPPELP TQQAPRTPGC LRPSGRSFWP 51 100 ENSP00000384434/1-271 ACQESVTALC FLQETVERLG QSPAQDTPVL GPCWDPMALG TQGRLLLDRD ENSBTAP00000049710/1-276 AHQDSVTALR FLQETAEELA QTP-WDTQAL GPYWEPKALE TLGPLPQAKD ENSTTRP00000009047/1-236 AHQDSVTALH FLQETAEGLA QPATWDTQAL GPCWEPKALE TLGALPPAKD bmy_13751T0/1-224 AHQDSVTALH FLQEPAEGLA QPPAWDTQAL GPCWEPKALE TLGALPLAED BACU002502/1-273 AHQDLVTDLH FLQEPAEGLA QSPTWDTQAL GPCWEPKALE TLGALPLAED 101 150 ENSP00000384434/1-271 SKDTQTRISQ KGRRLQPPGT P---SAPPQR RPRKQLNPCR GTERVDPGFE ENSBTAP00000049710/1-276 DKNMLTLVSQ QSPNLGSPRA PPTSPAQPQR RPRKQSNPQR GAEKVDPLFE ENSTTRP00000009047/1-236 TKNMLTPVSQ QSRSLGPRVA PPASSAQPQR RPRKQSNPQR GAEKVDPQFE bmy_13751T0/1-224 AKNMLTPISQ QSPSLGPRVA SPASSAQPQR RPRKQSNPQR GAEKVDPRFE BACU002502/1-273 AKNMLTPVSQ QSPSLGPQVG PPASSAQPQR RPRKQSNPQR GAEKVDPRFE 151 200 ENSP00000384434/1-271 GVTLKFQIKP DSSLQIIPTY ---SLPCSSR SQESP-ADAV GGPAAHPGGT ENSBTAP00000049710/1-276 GVTLKFQIKP DSSLQIIPSY RLPSLACSSR SPGPPTPGPA RGPEANPG-- ENSTTRP00000009047/1-236 GVTLKFQIKP DSSLQIIPTY ---SLACSTR SQGPP-PGPA RVPEANAR-- bmy_13751T0/1-224 GVTLKFQIKP DSSLQIIPTY ---SLACSTR SQGPP-PGPA RGPEANAG-- BACU002502/1-273 GVTLKFQIKP DSSLQIIPIY ---SLACSTR SQGPP-PGPA RGPEANAG-- 201 250 ENSP00000384434/1-271 EAHSAGSEAL EPRRCASCRT QRTPLWRDAE DGTPLCNACG IRYKKYGTRC ENSBTAP00000049710/1-276 -----GSEAL APRRCASCRT ERTPLWRDAE DGTPLCNACG IRYKKYGTRC ENSTTRP00000009047/1-236 -----GSEAL GPRRCASCRT QRTPLWRDAE DGTPLCNACG IRYKKYGTRC bmy_13751T0/1-224 -----GSESL GRRRCASCRT QRTPLWRDAE DGTPLCNACG IRSSK----- BACU002502/1-273 -----GSESL GRRRCASCRT QRTPLWRDAE DGTPLCNACG IRYKKYGTRC 251 300 ENSP00000384434/1-271 SSCWLVPRKN VQPKRLCGRC GVSLDP---- IQEG ENSBTAP00000049710/1-276 SSCWLVPRKN VQPKKLCGRC GVSLGPHPAS AQEG ENSTTRP00000009047/1-236 SSCWLVPRKS VQPKRLCGRC GVLLGPHPVP TQEG bmy_13751T0/1-224 ---------- ---------- ---------- ---- BACU002502/1-273 SSCWLVPRKS VQPKRLCGRC GVSLGPPPVP TQEG