KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:56 2014 Check: 00 .. Name: ENSBTAP00000049722/1-738 Len: 812 Check: 2537 Weight: 1.00 Name: ENSTTRP00000003912/1-715 Len: 812 Check: 9170 Weight: 1.00 Name: bmy_04225T0/1-714 Len: 812 Check: 8120 Weight: 1.00 Name: BACU013481/1-516 Len: 812 Check: 5008 Weight: 1.00 // 1 50 ENSBTAP00000049722/1-738 -MEAPKKED- ---------- ---------- ---------- ---------- ENSTTRP00000003912/1-715 -MEVPKKDD- ---------- ---------- ---------- ---------- bmy_04225T0/1-714 MARVCRMDEA ARPGHSEPAA EPGVEGFSPD SRSRIPFSTA DRWKSVAVTY BACU013481/1-516 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000049722/1-738 ILLLADEKFD FDLSLSSSSA NEDDEVFFGP IGHKERCIAA SLELNNQIPE ENSTTRP00000003912/1-715 TLLLADEKFD FDLSLSSSXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04225T0/1-714 ILLLADEKFD FDLSLSSSSA NEDDEVFLGP VGHKERCIAA SLELNHHIPE BACU013481/1-516 ILLLADEKFD FDLSLSSSSA NEDDEVFLGP VGHKERCIAA SLELNHHIPE 101 150 ENSBTAP00000049722/1-738 EPPLPASERH FIWSPLAGEK FVEVYKEAHL LAFQIQSNGR TT-AAQAAQP ENSTTRP00000003912/1-715 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXSN SKKAAPAATP bmy_04225T0/1-714 EPPLPASESH FTWSPLTGEK FVEVYKEAHL LALQIQSNGK TR-AAPASKP BACU013481/1-516 EPPLPASESP FTWSPLTGEK FVEVYKEAHL LALQIQSNGK AR-AAPAAKP 151 200 ENSBTAP00000049722/1-738 EDPGGQGGEG FIQEPKLKIN LFDRENEVKK SPKSLKRETY CLSDDLWRAP ENSTTRP00000003912/1-715 KGPGSQAVEG FIQESKLKIH LFERENEAKK SPKSLKRETY HLPDSPSRGP bmy_04225T0/1-714 EDPGSQGVDG FIQESKLKIN LFERENEVKK SPKSLKRETY HLSDSPSRGP BACU013481/1-516 EDPGSQGVDG FIQESKLKIN LFERENEVKK SPKSLKRETY HLSDSPSSRP 201 250 ENSBTAP00000049722/1-738 LLRGTQPASS AAPLAAPAQT GCPETSGPPP TLCPSLPAEP SAAQPPNQAG ENSTTRP00000003912/1-715 AL--GLPAPL AALLAAPAQE SRPQTPGPPH A--APLPVDP GAAHPPDQAG bmy_04225T0/1-714 PPWGTQLPSG AALPAAPAQA SRPRTPGPPR ASCSSLPVEP SAAHPPDQAG BACU013481/1-516 PPWGTQPPSG AALPAAPAQA SRPRTPGPPR ASCSSLPAEP SAARPPDHAG 251 300 ENSBTAP00000049722/1-738 AQKKVASKIQ VPSLSPPHHR NHYKASAKPV RQKPASPPRM KIQNEKDTHS ENSTTRP00000003912/1-715 TQKKVTSKLL LPRASSIRGK SIPSALEKPM KEKPAGPSRM KILNEKDSHS bmy_04225T0/1-714 AHKKVTSKLL PPRASSLRGK SIPSALQKPM KEKPASPSRM KILNEKDSHS BACU013481/1-516 TQKKATSKLL PPRASSLRGK SIPSALEKPV KEKPASPSRM KILNEKDSHS 301 350 ENSBTAP00000049722/1-738 SVPPDKLSTT RAVASVPASG SHLVPGKRSL PVPNKSGPKK TMLKPPGYAG ENSTTRP00000003912/1-715 SVPPDKPCAA RDIASLPAGG NHTVQGKRSL PVPNKFGLKK TMLKPPGCAG bmy_04225T0/1-714 SVPPDKPRAA RDVASLPAGG NHVVQGKRSL PVPNKSGLKK TMLKPPGCAS BACU013481/1-516 SVPPDKPRAA RDVASLPAGG NHVVQGKRSL PVPNKSGLKK TMLKPPGCAG 351 400 ENSBTAP00000049722/1-738 GLAGRSSSGS VSGLSSTARA SPATGGAKPS ERPGISADSA RSSSSQTGRA ENSTTRP00000003912/1-715 SLARKSSSGS VSGVSASVCA SPAAGKGKPR ERPSIPADSS QSNTSQSGRA bmy_04225T0/1-714 SLARKSSSGS VSGVSASVCA SPAAGKAKPR ERPSIPADSF QSNTSQLGRT BACU013481/1-516 SLARKSSSGS VSGVSASVCA SPAAGKGEPL D--------- ---------- 401 450 ENSBTAP00000049722/1-738 GLALPRPSLK AGPGGVACRQ SQRPEAAEWT AERPRGPPRA SLPQPQTPEQ ENSTTRP00000003912/1-715 GLVLPRLCLQ PGPAGMSCRQ SQRPGVAEST AEQPRAPTRA ALTQPQSPGQ bmy_04225T0/1-714 GLVLPRLCLQ PGPAGVSCRQ SQRPGVAEST AEQPRAPTRA ALTQPQTPGQ BACU013481/1-516 ---------- -GATPKSCR- AQRP------ ---------- ---------- 451 500 ENSBTAP00000049722/1-738 GGPGPSSCCG LSQSSQWDKT GGTRRRDSCL NSKTKAVATP TNQFKIPRFS ENSTTRP00000003912/1-715 GGPGLNSHLS LSQSSQMNKT GSTRRRDSCL NSKAKVMPTA TNQFKIPECS bmy_04225T0/1-714 GDPGLNSHLS LSQSSQMNKT GSTRRRDSRL NSKTKVMPSP TNHFKIPKCS BACU013481/1-516 ---------- -QSCTSVERT APVREGDSRV AARPSDW-SP DGSFP-P--- 501 550 ENSBTAP00000049722/1-738 TGEPPDGATP KSCRAQRPQS CTSVGRVAHS TPMRWSSAAQ SLVSSMRTPV ENSTTRP00000003912/1-715 TGEPLDGATP KSCRAQRPQS CTSVGRVAHS TPARWSSASQ SLLSR----- bmy_04225T0/1-714 T--------- ---------- ----GKVAHS TPARWSSASQ SLASSVRTPV BACU013481/1-516 ---------- ---------- VSALPQALNF SPEKSDFTFS KSITTEVALD 551 600 ENSBTAP00000049722/1-738 STRRLSALPT PAGRRLSSLP LATPTTVPRL LASPLPTSAK RLSSEPPKKS ENSTTRP00000003912/1-715 --GRRSALPT PASRRLSSLP LATPKTVPRA LASPLRVSAR RLSSEPQKKS bmy_04225T0/1-714 SMGRRSALPT PAGRRLSSLP LATPKTMPRA LASPLRVSAR RLSSEPQKKS BACU013481/1-516 EAQPPEAAP- PS-------- ---------- ---------- ---------- 601 650 ENSBTAP00000049722/1-738 TVRTAPAMEG DGQPASRRLD LSPNGSCSPP SAVPQALDFS PEKSDFTFSQ ENSTTRP00000003912/1-715 AVRTAPVREG DSRAATGPSG WSPDGSFPPA SAVPQALNFS PEKSDFMFSK bmy_04225T0/1-714 AVRTAPVREG DSRAAAGPSD WSPDGSFPAA KH-------- ---------- BACU013481/1-516 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000049722/1-738 SVTVEVTLDE AQPPEATAPS EVRGTGRADF VIQALLVDLK LDQLSLTMEA ENSTTRP00000003912/1-715 SITTEVALDE AQPPEATTPS EA-------- -----LVDVK LDQLSVTLRA bmy_04225T0/1-714 ---------- ---------- ---------- -----LTEKE QKRSCRCVRF BACU013481/1-516 ---------- ---------- ---------- --EALLVDVK LDQLSIALRA 701 750 ENSBTAP00000049722/1-738 AATALDDRPL IDFCR---SP EAVVALRSGS GPLVDLLTNT PEANRKAVAK ENSTTRP00000003912/1-715 AATPLGDLPL IDFCK---TP EASVALGSGS GPLVDLLTNT PDADRRAVAK bmy_04225T0/1-714 -------QPL WRWVAALLTP EPFAGQETGL CP--NPAPNC PRARGPVSFP BACU013481/1-516 AATPLGDLPL IDFCK---TP EASVALGSGS GPLVDLLTNT PGVNRRAAAN 751 800 ENSBTAP00000049722/1-738 PPDEVGQLID LASPLILLSP EADKENMES- ---------- --------PL ENSTTRP00000003912/1-715 PCHEVGQLID LASPLILLSP EADKENVES- ---------- --------PL bmy_04225T0/1-714 PTRELTL--- ---------P APVGSSCFSS HKWGLGAFLI SLKTLKTIPV BACU013481/1-516 ACHEVRQLID LASPLILLSP EADKENVES- ---------- --------PL 801 850 ENSBTAP00000049722/1-738 LKF------- -- ENSTTRP00000003912/1-715 LKF------- -- bmy_04225T0/1-714 LKKMTCLIII HV BACU013481/1-516 LKF------- --