KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:59:58 2014 Check: 00 .. Name: ENSP00000295641/1-1099 Len: 1132 Check: 9689 Weight: 1.00 Name: ENSBTAP00000049746/1-1073 Len: 1132 Check: 5183 Weight: 1.00 Name: ENSTTRP00000000202/1-1063 Len: 1132 Check: 6384 Weight: 1.00 Name: bmy_13395T0/1-790 Len: 1132 Check: 9729 Weight: 1.00 Name: BACU012733/1-913 Len: 1132 Check: 64 Weight: 1.00 // 1 50 ENSP00000295641/1-1099 RFGSAPQRPV AMTTAQRDSL LWKLAGLLRE SGDVVLSGCS TLSLLTPTLQ ENSBTAP00000049746/1-1073 FLWLRPQRPV AMTTAPRDSL VWKLAGLLRE SGDVVLSGHS TLTLLTATLQ ENSTTRP00000000202/1-1063 ---------- -MTTAPRDSL VWKLAGLLRE SGDAVLSGRS TLSLLTAALQ bmy_13395T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU012733/1-913 ---------- -MTTAPRDSL VWKLAGLLRE YGDAVLSGRS TLSLLTATLQ 51 100 ENSP00000295641/1-1099 QLNHVFELHL GPWGPGQTGF VALPSHPADS PVILQLQFLF DVLQKTLSLK ENSBTAP00000049746/1-1073 HLNHVFELHL GPWGPGQTGF VALPSHPADS PIILQLQFLF DVLQKTLSLK ENSTTRP00000000202/1-1063 QLNHVFELHL GPWGPGQTGF VALPSHPADS PVILQLQFLF DVLQKTLSLK bmy_13395T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU012733/1-913 QLNHVFELHL GPWGPGQTGF VALPSHPADS PVILQLQFLF DVLQKTLSLK 101 150 ENSP00000295641/1-1099 LVHVAGPGPT GPIKIFPFKS LRHLELRGVP LHCLHGLRGI YSQLETLICS ENSBTAP00000049746/1-1073 LVHVPGLGLS GPIKIFPFKS LRQLELRGVP VHCLRGLRGI YSQLETLICS ENSTTRP00000000202/1-1063 LVHVPGLGLP GPIKIFPFKS LRQLELRGVP LHCLHGLRAI YSQLETLICS bmy_13395T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU012733/1-913 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000295641/1-1099 RSLQALEELL SACGGDFCSA LPWLALLSAN FSYNALTALD SSLRLLSALR ENSBTAP00000049746/1-1073 RSLQALEELL SACGGDLCSA LPWLALLSAD FSYNALTALD SSLRLLSALR ENSTTRP00000000202/1-1063 RSLQALEELL SACGGDLCSA LPWLALLSAD FSYNTLTALD SSLRLLSALR bmy_13395T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU012733/1-913 -------ELL SACGGDLCSA LPWLALLSAD FSYNTLTALD SSLRLLSALR 201 250 ENSP00000295641/1-1099 FLNLSHNQVQ DCQGFLMDLC ELHHLDISYN RLHLVPRMGP SGAALGVLIL ENSBTAP00000049746/1-1073 FLNLSHNQVQ DCKGFLMDLS ELCHLDISYN HLRLVPKMGP SGAALGTLIL ENSTTRP00000000202/1-1063 FLNLSHNQVQ DCEGFLMDLS ELCHLDISYN HLRLVPRMGP SGAALGTLIL bmy_13395T0/1-790 ---------- ---------- ---------- -------MGP SGAALGTLIL BACU012733/1-913 FLNLSHNQVQ DCEGFLRDLS ELCHLDISYN HLRLVPRMGP SGAALGTLIL 251 300 ENSP00000295641/1-1099 RGNELRSLHG LEQLRNLRHL DLAYNLLEGH RELSPLWLLA ELRKLYLEGN ENSBTAP00000049746/1-1073 RGNELQSLHG LEQLRNLRHL DVAYNLLERH RELAPLWLLT ELRKLYLEGN ENSTTRP00000000202/1-1063 RGNELQSLHG LEQLRNLRHL DVAYNLLERH RELSPLWLLA ELRKLCLEGN bmy_13395T0/1-790 RCNELQSLHG LEQLRNLRHL DVAYNLLERH RELSPLWLLA ELRKLCLEGN BACU012733/1-913 RGNELQSLHG LEQLRNLRHL DVAYNLLERH RELSPLWLLA ELRKLCLEGN 301 350 ENSP00000295641/1-1099 PLWFHPEHRA ATAQYLSPRA RDAATGFLLD GKVLSLTDFQ THTSLGLSPM ENSBTAP00000049746/1-1073 PLWFHPEHRV ATARYLSSRA RDTAAGFLLD GKALSLTDLQ TSTSSGLSTS ENSTTRP00000000202/1-1063 PLWFHPEHRA ATARCLSPRA RDAAAGFLLD GKALSLTDFQ TSPSSGLGPM bmy_13395T0/1-790 PLWFHPEHRA ATARCLSPRA RDAAAGFLLD GKALSLTDFQ TSPSSGLGPM BACU012733/1-913 PLWFHPEHRA ATALCLSPRA RDAAAGFLLD GKALSLTDFQ TSPSSGLGPM 351 400 ENSP00000295641/1-1099 GPPLPWPVGS TPETSGGPDL SDSLSSGGVV TQPLLHKVKS RVRVRRASIS ENSBTAP00000049746/1-1073 VPPPPWPVGS TIETSGGPDL SDSPSSGGVV AQPPLRKVKS RVRVRRASIS ENSTTRP00000000202/1-1063 APPLPRPVGS TTETSGGADL SDSPSSGGVV VQPPVRKVKS RVRVRRASIS bmy_13395T0/1-790 ASPLPWPVGS TTETSGGPDL SDSPSSGGVV AQPPVRKVKS RVRVRRASIS BACU012733/1-913 APPLPWPVGS TTETSGGPDL SDSPSSGGVV AQPQLRKVKS RVRVRRASIS 401 450 ENSP00000295641/1-1099 EPSDTDPEPR TLNPSPAGWF VQQHPELELM SSFRERFGRN WLQYRSHLEP ENSBTAP00000049746/1-1073 EPSDTDPEPR TLDPSPAGWF VQQHRELELM SSFRERFGCD WLQYRNHLEA ENSTTRP00000000202/1-1063 EPSDTDPEPR TLDPSPAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13395T0/1-790 EPSDTDPEPR TLDPSPAGRF VQQHRELELM NSFRDRFGRD WLQYRSHLEA BACU012733/1-913 EPSDTDPEPR TLDPSPAGRF VQQHRELELM NSFRDRFGRD WLQYRNHLEA 451 500 ENSP00000295641/1-1099 SGNPLPATPT TSAPSAPPAS SQGPDTAPRP SPPQEEARGP QESPQKMSEE ENSBTAP00000049746/1-1073 S------ALS TLSPDA---- -PSPGPAPSP PPPEK----- -ESPQEVAEE ENSTTRP00000000202/1-1063 XXXX-XXXXX RTPALAPASG HPSPETVCSP PPLD------ -ESAQEEAEE bmy_13395T0/1-790 SG---AAALG TRPPDA---- -PSPEAVRGP PPPEK----- -GSPQEEAEA BACU012733/1-913 SG---PAALG TRPPDA---- -PSPEAVRGP PPPEK----- -GSPQEEAEA 501 550 ENSP00000295641/1-1099 VRAEPQEEEE EKEGKEEKEE GEMVEQGEEE AG--EEEEEE QDQKEVE--- ENSBTAP00000049746/1-1073 VWPEPEPREE ED-------- --LEKQGEEE LEKQGEEEGG EEQSEVE--- ENSTTRP00000000202/1-1063 VGVEPEPQEE EE-------- -----GGEEE ----EEEEEG QEPRGVE--- bmy_13395T0/1-790 VRVEPEPQEE EE-------- ---LEEGEEE -G--GKEEEE EEQSELEGEC BACU012733/1-913 VRVEPEPQEE EE-------- ---LEEGEEE -G--GKEEEE EEQSELE--- 551 600 ENSP00000295641/1-1099 ---------- ---------- --------AE LCRPLLVCPL EGPEGVRGRE ENSBTAP00000049746/1-1073 ---------- ---------- --------VE LCRPILVCPL EGPEGVRGRE ENSTTRP00000000202/1-1063 ---------- ---------- --------VE LCHPMLVCPL EGPEGLRGRE bmy_13395T0/1-790 SLAARGRPGR GRCLGARRPQ GPSLGLSSVE LCRPMLVCPL EGPEGLRGRE BACU012733/1-913 ---------- ---------- --------VE LCRPMLVCPL EGPGGLRGRE 601 650 ENSP00000295641/1-1099 CFLRVTSAHL FEVELQAART LERLELQSLE AAEIEPEAQA QRSPRPTGSD ENSBTAP00000049746/1-1073 CFLWVTTGHL FEVELQAART LQRLELRSLE AAEVEAETQT QSEQVPESSD ENSTTRP00000000202/1-1063 CFLWVTAGHL FEVELQAART LERLELQSLE AAEIEAETQT QSEPVPEGSD bmy_13395T0/1-790 CFLWVTAGHL FEVELQAART LERLELQSLE AAEIEAETQT QSEPVPEGSD BACU012733/1-913 CFLWVTAGHL FEVELQAART LERLELQSLE AAEIEAETQT QSEPVPEGSD 651 700 ENSP00000295641/1-1099 LLPGAPILSL RFSYICPDRQ LRRYLVLEPD AHAAVQELLA VLTPVTNVAR ENSBTAP00000049746/1-1073 PQPQGPILVL RFSYICPDRQ LRRYVVLEPD AQAAVQELLA VLTPAAT-SQ ENSTTRP00000000202/1-1063 PRPGGPVLVL RFSYICPERQ LRRYVVLEPD AQAAVQELLA VLTPAATLGK bmy_13395T0/1-790 PHPAGPVLVL RFSYICPDRQ LRRYVVLEPD AQAAVQELLA VLTPAATLGK BACU012733/1-913 PRPGGPVLVL RFSYICPDRQ LRRYVVLEPD AQAAVQELLA VLSPAATLGK 701 750 ENSP00000295641/1-1099 EQLGEARDLL LGRFQCLRCG HEFKPEEPRM GLDSEEGWRP LFQKTESPAV ENSBTAP00000049746/1-1073 HQLEEAGAPP GDRLQCLRCG REFKPEEPRL GLDGEEGWRP LFRKTESSAV ENSTTRP00000000202/1-1063 HQLGEVRDPP GGRLQCLRCG HEFKPEEPRS GLDGEEGWRP LFRKTESPAV bmy_13395T0/1-790 HQLGEARDPP GGRLQCLRCG HEFKPEEPRS GLDGEEGWRP LFRKT----- BACU012733/1-913 HQLGEARDPP GGRLQCLRCG HEFKPEEPRS GLD------- -----ESPAV 751 800 ENSP00000295641/1-1099 CPNCGSDHVV LLAVSRGTPN RERKQGEQSL APSPSASPVC HPPGHGDHLD ENSBTAP00000049746/1-1073 CPYCGSDHVV LLAVSPGTPS GERRQEEQSM APSQSLSTVH DPPGHSDPSN ENSTTRP00000000202/1-1063 CPNCGSDHVV LL--SPGTPS GKQRQGEQSP APSQSPSPVH GPPGHSAYGT bmy_13395T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU012733/1-913 CPNCGSDHVV LL--SPGTPS GEQGQGEQSP APSQSPSPGH SPPGHSAYST 801 850 ENSP00000295641/1-1099 RAKNSPPQAP STRDHGSWSL SPPPERCGLR SVDHRLRLFL DVEVFSDAQE ENSBTAP00000049746/1-1073 GAGSAPSQAL ASHDHHSWSL SPPPERCGLR SVDHRLRLFL DVEVFTDAQE ENSTTRP00000000202/1-1063 RAGSAPSQAP ASRDRHSWSL SPPPERRGLR SVDHRLRLFL DVEVFTDAQE bmy_13395T0/1-790 ---------- ---------- --APERCGLR SVDHRLRLFL DVEVFTDAQE BACU012733/1-913 RAGSAPSQAP ASRDRHSWSL SPPPERCGLR SVDHRLRLFL DVEVFTDAQE 851 900 ENSP00000295641/1-1099 EFQCCLKVPV ALAGHTGEFM CLVVVSDRRL YLLKVTGEMR EPPASWLQLT ENSBTAP00000049746/1-1073 EFQCCLKVPL ALAGHPGEFL CLVVVSDQRF YVLKVTGEIC GPPASWLQPA ENSTTRP00000000202/1-1063 EFQCCLKVPV VLAGHPGEFL CLAVVSDHRL YVLKVTGEIR GPPAGWLQPT bmy_13395T0/1-790 EFQCCLKVPL VLAGHPGEFL CLAVVSDHRL YVLKVTGEIR GPPAGWLQPT BACU012733/1-913 EFQCCLKVPL VLAGHPGEFL CLTVVSDHRL YVLKVTGEIR GPPAGWLQPT 901 950 ENSP00000295641/1-1099 LAVPLQDLSG IELGLAGQSL RLEWAAGAGR CVLLPRDARH CRAFLEELLD ENSBTAP00000049746/1-1073 LAVPLQDLRH IELGLAGQSL RLEWAAGSGA CVLLPREAKR CRAFLEELTD ENSTTRP00000000202/1-1063 LAIPLQDLSS IELGLAGQSL RLEWAAGAGG CVLLPRDARH CQAFLEELTD bmy_13395T0/1-790 LAIPLQDLSS IELGLAGQSL RLEWAAGAGG CVLLPRDARH CRAFLEELTD BACU012733/1-913 LAIPLQDLSS IELGLAGQSL RLEWAAGAGG CVLLPRDARH CRAFLEELTD 951 1000 ENSP00000295641/1-1099 VLQSLPPAWR NCVSATEEEV TPQHRLWPLL EKDSSLEARQ FFYLRAFLVE ENSBTAP00000049746/1-1073 VLQSLPPTRR SSFSATEEEV TPKHRLWPLL KTESSSEPPR FFYLRVFLDE ENSTTRP00000000202/1-1063 VLQSLPPTRR SSVSATEEEV TPKHRLWPLL ETDPSLEPLR FFYLRAFLVE bmy_13395T0/1-790 VLQSLPPTRR SSVSATEEEV TPKHRLWPLL ETDPSLEPLR FFYLRAFLVE BACU012733/1-913 VLQSLPPTRR SSVSATEEEV TPKHRLW--- ---------- ---------- 1001 1050 ENSP00000295641/1-1099 GPSTCLVSLL LTPSTLFLLD EDAAGSPAEP SPPAASGEAS EKVPPSGPGP ENSBTAP00000049746/1-1073 GPATCPVSLL LTLSTLYLLD EDPAGSQAEP PSPAASGEAS EKAPPPGPGP ENSTTRP00000000202/1-1063 GPSTCPVSLL LTLSTLYLLE EDPIGSQAEP PLPAASGEAS EKAPPPGPGP bmy_13395T0/1-790 GPSTCPVSLL LTLSTLYLLD EDPIGSQAEP PLAAASGEAS EKAPAPGPGP BACU012733/1-913 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000295641/1-1099 AVRVREQQPL SSLSSVLLYR SAPEDLRLLF YDEVSRLESF WALRVVCQEQ ENSBTAP00000049746/1-1073 SVSVREQQPL SSLSSVLLYR VAPEALRLVF YDEVSRLESF WALRVVCPDQ ENSTTRP00000000202/1-1063 SVRVREQQAL SSLSSVLLYR VAPEHLRLVF YDEVSRLESF WALHVVCPEQ bmy_13395T0/1-790 AVRVREQQPL SSLSSVLLYR GAPDDLRLVF YDEVSRLESF WALHVVCPEQ BACU012733/1-913 -----EQQPL SSLSSVLLYR GAPDDLRLVF YDEVSRLESF WALHVVCPEQ 1101 1150 ENSP00000295641/1-1099 LTALLAWIRE PWEELFSIGL RTVIQEALAL DR ENSBTAP00000049746/1-1073 LTALLAWIRK PWEELFSIGL RTVTQEALDL DQ ENSTTRP00000000202/1-1063 LTALLAWIRE PWEELFSIGL RTVTQEALDL GQ bmy_13395T0/1-790 LTALLAWIRE PWEELFSIGL RTVTQEALDL DQ BACU012733/1-913 LTALLAWIRE PWEELFSIGL RTVTQEALDL DQ