KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:59:59 2014 Check: 00 .. Name: ENSP00000367910/1-622 Len: 626 Check: 7817 Weight: 1.00 Name: ENSBTAP00000049770/1-570 Len: 626 Check: 710 Weight: 1.00 Name: bmy_19679T0/1-562 Len: 626 Check: 7574 Weight: 1.00 Name: ENSTTRP00000016523/1-585 Len: 626 Check: 6924 Weight: 1.00 // 1 50 ENSP00000367910/1-622 MSRQT----T SVGSSCLDLW REKNDRLVRQ AKVAQNSGLT LRRQQLAQDA ENSBTAP00000049770/1-570 MAHQTPLGSS ASHVSCLDLW REKNDQLVRQ AKVAQDSSLP MRRQQLAQDA bmy_19679T0/1-562 MPFSDPPCAP RTRSAFVTF- ---------- -------GLL QRRK--ARDE ENSTTRP00000016523/1-585 MAHRT----- SGLSSCLDLW REKNDQLVQQ AKVAQDSGLS PRRQQLAQDA 51 100 ENSP00000367910/1-622 LEGLRGLLHS LQGLPAAVPV LPLELTVTCN FIILRASLAQ GFTEDQAQDI ENSBTAP00000049770/1-570 LEGLRGLLCS LRGLPATVSV LPLELTVICN FITLRANLAQ GFTEDLAQDI bmy_19679T0/1-562 V--------- ---------- -PPQLYV-CV YST------- ---------- ENSTTRP00000016523/1-585 LEGLRGLLHS LQGLPAAVSV LPLELTVICN FITLRASLAQ GFTDDLVHDI 101 150 ENSP00000367910/1-622 QRSLERVLET QEQQGPRLEQ GLRELWDSVL RASCLLPELL SALHRLVGLQ ENSBTAP00000049770/1-570 QQGLERVLET QGQLEARLEH GLWGLWDSTL RVSSLLPELL PALHHLAGLQ bmy_19679T0/1-562 ------VLET QEQLKARLEH GLRGLWDSVL HVSSLLPELL PALHHLAGLQ ENSTTRP00000016523/1-585 QQGVERVLET QEQLKARLEH GLRGLWDSVL HVSSLLPELL PALHHLAGLQ 151 200 ENSP00000367910/1-622 AALWLSADRL GDLALLLETL NGSQSGASKD LLLLLKTWSP PAEELDAPLT ENSBTAP00000049770/1-570 AALWLTTNRL GDLTLLLQTL TVSQSRASED MLLLLKTWRP PAEESDAPLT bmy_19679T0/1-562 AALWLSTDRL GDLTLLLQTL NVSQSRASED LLLLLKTWRP PAEESDAPLT ENSTTRP00000016523/1-585 AALWLSTDRL GDLTLLLQTL NVSQSRASED LLLLLKTWRP PAEESDAPLT 201 250 ENSP00000367910/1-622 LQDAQGLKDV LLTAFAYRQG LQELITGNPD KALSSLHEAA SGLCPRPVLV ENSBTAP00000049770/1-570 LQDARGLRDV LLTAFAYRQG LQELITGSLP KALSSLHEAA SGLCPRSLLV bmy_19679T0/1-562 LQDAQDLRGV LLTAFAYRQG LQELITGNLP RALSSLHEAA SGLCPRPVLV ENSTTRP00000016523/1-585 LQDAQNLRGV LLTAFAYRQG LQELITGNLP RALSSLHEAA SGLCPRPVLV 251 300 ENSP00000367910/1-622 QVYTALGSCH RKMGNPQRAL LYLVAALKEG SAWGPPLLEA SRLYQQLGDT ENSBTAP00000049770/1-570 QVYTALGTCL RKMGSPQRAL LYLVAALKEG STWGPPLLEA SRLYQQLGNI bmy_19679T0/1-562 QVYTALGTCL RKMGSPQRAL LYLVAALKGE STWGPPLLEA SRLYRQLENT ENSTTRP00000016523/1-585 QVYTALGTCL RKMGSPQRAL LYLVAALKGE STWGPPLLEA SRLYRQLENT 301 350 ENSP00000367910/1-622 TAELESLELL VEALNVPCSS KAPQFLIEVE LLLPPPDLAS PLHCGTQSQT ENSBTAP00000049770/1-570 AAEIESLELL VEALSITRIP EARQLLIEVE LLLPQPDPAS PLHCGTQSQA bmy_19679T0/1-562 AAEIECLELL VEALSVAHIP EAPQLLIEVE LLLPRPDPAS PLHCGTQSQA ENSTTRP00000016523/1-585 AAEIECLELL VEALRVAHIP EAPQLLIEVE LLLPRPDPAS PLHCGTQSQA 351 400 ENSP00000367910/1-622 KHILASRCLQ TGRAGDAAEH YLDLLALLLD SSEPRFSPPP SPPGPCMPEV ENSBTAP00000049770/1-570 KYLLASRCLQ TGRAADAAEH YLDLLALLLD GSEPKFSPPP CPPGPCVPEL bmy_19679T0/1-562 KYLLASRCLQ TGRAENAAEH YLDLLALLLD GSEPKFSPPP CPPGPCVPEV ENSTTRP00000016523/1-585 KYLLASRCLQ TGRAENAAEH YLDLLALLLD GSEPKFSPPP CPRGPCVPEV 401 450 ENSP00000367910/1-622 FLEAAVALIQ AGRAQDALTL CEELLSRTSS LLPKMSRLWE DARKGTKELP ENSBTAP00000049770/1-570 FLEAAAALIQ AGRAQDALTV CEELLSRTSF LLPKRPRLWE DARRRTKESP bmy_19679T0/1-562 FLEAAAALIQ AGRAQDALTV CEELLSRMSS LLPKRPRLWE DARRGTKELP ENSTTRP00000016523/1-585 FLEAAAALIQ AGRAQDALTV CEELLSRMSS LRPKRPRLWE DARRGTKELP 451 500 ENSP00000367910/1-622 YCPLWVSATH LLQGQAWVQL GAQKVAISEF SRCLELLFRA TPEEKEQGAA ENSBTAP00000049770/1-570 HCSHWVSATH LLQGQAWVQL GAQKEAISEY SRCLELLFRA TPKDKEQ--- bmy_19679T0/1-562 HCSPWVSATY LLQGQAWVQL GAQKEAISEF SRCLELLFQA TPKDKEQGPA ENSTTRP00000016523/1-585 HCSPWVSATY LLQGHARVQL GAEKEAISEF SRCLELLFQA TPTDKEQGPA 501 550 ENSP00000367910/1-622 FNCEQGCKSD AALQQLRAAA LISRGLEWVA SGQDTKALQD FLLSVQMCPG ENSBTAP00000049770/1-570 ---------- ---------- ---------- ---------- ---------G bmy_19679T0/1-562 SSCEQGCTSD VALQQLRAAA LTSRGLEWVA SGQDTKALQD FLLSVQVCPG ENSTTRP00000016523/1-585 SSCEQGCTSD VALQQLRAAA LISRGLEWVA SGQDTKALQD FLLSVQVCPG 551 600 ENSP00000367910/1-622 NRDTYFHLLQ TLKRLDRRDE ATALWWRLEA QTKGSHEDAL WSLPLYLESY ENSBTAP00000049770/1-570 NQDASYHLLQ TLRRLDRRDE ATALWRRLEA QTELPQENTA WSLPLYLETC bmy_19679T0/1-562 NQDASFHLLQ TLRRLDRRDE ATALWRRLEA QTELPQENAA WSLPLYLETC ENSTTRP00000016523/1-585 NQDASFHLLQ TLRRLDRRDE ATALWRRLEA QTELPQENAA ---------- 601 650 ENSP00000367910/1-622 LSWIRPSDRD AFLEEFRTSL PKSCDL ENSBTAP00000049770/1-570 LGWIRPPDRE TLCEEFQTS- ---GDS bmy_19679T0/1-562 LGWIHPPDRE TLLEEFRTSL LETHDL ENSTTRP00000016523/1-585 ---------- ---------- ------