KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:02 2014 Check: 00 .. Name: ENSBTAP00000049933/1-466 Len: 572 Check: 9654 Weight: 1.00 Name: ENSP00000370419/1-469 Len: 572 Check: 2094 Weight: 1.00 Name: bmy_04226T0/1-570 Len: 572 Check: 3759 Weight: 1.00 Name: BACU013480/1-459 Len: 572 Check: 6397 Weight: 1.00 Name: ENSTTRP00000003911/1-458 Len: 572 Check: 5149 Weight: 1.00 // 1 50 ENSBTAP00000049933/1-466 MAATVPLRDC QAWKDARLPL STTSNEACRL FDATLTQYVK WTNDQGLGGI ENSP00000370419/1-469 MAAASPLRDC QAWKDARLPL STTSNEACKL FDATLTQYVK WTNDKSLGGI bmy_04226T0/1-570 MAAAAPLRDC QAWKDAGLPL STPSNEACRL FDATLTQYVK WTNDQSLGGI BACU013480/1-459 ---------- QAWKDAGLPL STPSNEACRL FDATLTQYVK WTNDQSLGGI ENSTTRP00000003911/1-458 ---------- -AWKDAGLPL STPSNEACRL FDATLTQYVK WTNDQSLGGI 51 100 ENSBTAP00000049933/1-466 EGCLSKLKAA DPTFAMGHAI ANGLVLIGTG SSVRLDKELD AAVKTMVEIS ENSP00000370419/1-469 EGCLSKLKAA DPTFVMGHAM ATGLVLIGTG SSVKLDKELD LAVKTMVEIS bmy_04226T0/1-570 EGCLSKLKAA DPTFALGHAI ANGLILIGTG SSVRLDKELD LAVKTMVEIS BACU013480/1-459 EGCLSKLKAA DPTFALGHAI ANGLILIGTG SSVRLDKELD LAVKTMVEIS ENSTTRP00000003911/1-458 EGCLSKLKAA DPTFALGHAI ANGLILIGTG SSVRLDKELD LAVKTMVEIS 101 150 ENSBTAP00000049933/1-466 KTQPLTHREQ LHVSAVETFA KGNFPKACEL WEQILQDHPT DMLALKFSHD ENSP00000370419/1-469 RTQPLTRREQ LHVSAVETFA NGNFPKACEL WEQILQDHPT DMLALKFSHD bmy_04226T0/1-570 KAQPLTQRER LHVSAVETFA KGNLPKACEL WEQILQDYPT DMLALKFSHD BACU013480/1-459 KAQPLTQRER LHVSAVETFA KGNLPKACEL WEQILQDHPT DMLALKFSHD ENSTTRP00000003911/1-458 KTQTLTRRER LHVSAVETFA KGNLPKACEL WEQILQDYPT DMLALKFSHD 151 200 ENSBTAP00000049933/1-466 AYFYLGYQEQ MRDSVARVYP FWTPDISLSS YVKGIYSFGL METNLYDQAK ENSP00000370419/1-469 AYFYLGYQEQ MRDSVARIYP FWTPDIPLSS YVKGIYSFGL METNFYDQAE bmy_04226T0/1-570 AYFYLGYQEQ MRDSVARIYP FWTPDIPLSS YVKGIYSFGL METNFYDRAE BACU013480/1-459 AYFYLGYQEQ MRDSVARIYP FWTPDIPLSS YVKGIYSFGL METNFYDRAE ENSTTRP00000003911/1-458 TYFYLGYQEQ MRDSVARIYP FWTPDIPLSS YVKGIYSFGL METNFYDRAE 201 250 ENSBTAP00000049933/1-466 KLAKEALAIN PTDAWSVHTV AHIHEMRAEV QEGLEFMQHS EAHWKDSDML ENSP00000370419/1-469 KLAKEALSIN PTDAWSVHTV AHIHEMKAEI KDGLEFMQHS ETFWKDSDML bmy_04226T0/1-570 KLAKEALSVN PTDAWSVHTV AHIHEMKAEV QDGLEFMQRS ETHWKDSDML BACU013480/1-459 KLAKEALSVN PTDAWSVHTI AHIHEMKAEV QDGLEFMQRS ETHWKDSDML ENSTTRP00000003911/1-458 KLAKEALSIN PTDAWSVHTI AHIHEMKAEV QDGLEFMQRS ETHWKDSDML 251 300 ENSBTAP00000049933/1-466 ACHNYWHWAL YLIEKGEYEA ALTIYDDHIL PSLRASGAML DVVDSCSMLY ENSP00000370419/1-469 ACHNYWHWAL YLIEKGEYEA ALTIYDTHIL PSLQANDAML DVVDSCSMLY bmy_04226T0/1-570 ACHNYWHWAL YLIEKGEYEA ALTIYDDHIL PSLRVSGAML DVVDSCSMLY BACU013480/1-459 ACHNYWHWAL YLIEKGEYEA ALTIYDDHIL PSLRVSGAML DVVDSCSMLY ENSTTRP00000003911/1-458 ACHNYWHWAL YLIEKGEYEA ALTIYDDHIL PSLRGSGAML DVVDSCSMLY 301 350 ENSBTAP00000049933/1-466 RLQMEGSPDG SRWP-VLGMS ERHGRKTGV- --GCHFLLQY SGLGCHLP-A ENSP00000370419/1-469 RLQMEGVSVG QRWQDVLPVA RKHSRDHILL FNDAHFLM-- ASLGAHDPQT bmy_04226T0/1-570 RLQMEGVSVG ERWQDVLSVT QKHSRDHILL FNDVHFLM-- ASLGAGDSRT BACU013480/1-459 RLQMEGVSVG ERWQDVLSVT QKHSRDHILL FNDVHFLM-- ASLGAGDSRT ENSTTRP00000003911/1-458 RLQMEGVSVG ERWRDVLSVT QKHSRDHILL FNDAHLLM-- ASLGAGDSRT 351 400 ENSBTAP00000049933/1-466 SQGLLTAPSW AGRSPGENCQ HLLARDVGLP LCQALVEAQD GSPDRVVELL ENSP00000370419/1-469 TQELLTTLRD ASESPGENCQ HLLARDVGLP LCQALVEAED GNPDRVLELL bmy_04226T0/1-570 TQELLTTLRD ASESPGENYQ HLLARDVGLP LCQALVEAQS GNPDGVVELL BACU013480/1-459 TQELLTTLRD ASESPGENYQ HLLARDVGLP LCQALVEAQS GNPDGVVELL ENSTTRP00000003911/1-458 TQELLTTLRD ASESPGENHQ HLLARDVGLP LCQALVEAQS GNPDGVVELL 401 450 ENSBTAP00000049933/1-466 LPIRYRLVQI GGSNAQ---- ---------R DVFNQLLIHA ---------- ENSP00000370419/1-469 LPIRYRIVQL GGSNAQ---- ---------R DVFNQLLIHA ---------- bmy_04226T0/1-570 QPIRYRLVQI GGSNAQVSQQ LQREGPSPGA PVPHSLYLRG VGAHGMGESL BACU013480/1-459 QPIRYRLVQI GGSNAQ---- ---------R DVFNQLLIHA ---------- ENSTTRP00000003911/1-458 LPIRHRIVQI GGSNAQ---- ---------R DVFNQLLIHA ---------- 451 500 ENSBTAP00000049933/1-466 ---------- ---------- ---------- -ALNCSSGLH KHVARS---- ENSP00000370419/1-469 ---------- ---------- ---------- -ALNCTSSVH KNVARS---- bmy_04226T0/1-570 SFTSPSKLVP ENRPACSGEG AGVPIPCPTS QSLTCPLDLS ERRLQPVTDS BACU013480/1-459 ---------- ---------- ---------- -ALNCSSGIH KNVARS---- ENSTTRP00000003911/1-458 ---------- ---------- ---------- -ALNCSSGIH KNVARS---- 501 550 ENSBTAP00000049933/1-466 ----LLMERD ALKPNSPLT- ---------- ---------- ---------A ENSP00000370419/1-469 ----LLMERD ALKPNSPLT- ---------- ---------- ---------E bmy_04226T0/1-570 RGLKLLVRHP QERGPEPFDG ARCLEAQLPT DCEAHPQGSR HPPPAVSRPG BACU013480/1-459 ----LLMERD ALKPNSPLT- ---------- ---------- ---------A ENSTTRP00000003911/1-458 ----LLMERD ALKPNSPLT- ---------- ---------- ---------A 551 600 ENSBTAP00000049933/1-466 RLIRKAA--- --AVHLLQ-- -- ENSP00000370419/1-469 RLIRKAA--- --TVHLMQ-- -- bmy_04226T0/1-570 RLPRGASPAI GPAATLASQG YK BACU013480/1-459 RLIRRAA--- --AVHLLQ-- -- ENSTTRP00000003911/1-458 RLIRRAA--- --AVHLLQ-- --