KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:04 2014 Check: 00 .. Name: ENSP00000368468/1-359 Len: 404 Check: 8579 Weight: 1.00 Name: ENSBTAP00000049984/1-353 Len: 404 Check: 7031 Weight: 1.00 Name: bmy_00673T0/1-232 Len: 404 Check: 6627 Weight: 1.00 Name: ENSTTRP00000012215/1-360 Len: 404 Check: 6593 Weight: 1.00 // 1 50 ENSP00000368468/1-359 MDCGSVGGQR TQRLPGRQRL L-FLPVGLSG RPGGSETSAR RCLSALSDGL ENSBTAP00000049984/1-353 MDCGSIAAER PKCPPSRRRL LPLLAAGRAG GLGGRGNPAR RLLPALPGGP bmy_00673T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012215/1-360 MDCGSVTNER PKR---RRRL LLSLVAGRGG GPGGRGRSTR NLLPLL-GGQ 51 100 ENSP00000368468/1-359 GALRPRAPAA RGGVSRASPL LLLLLVPSPR LAAAAPRRQL GDWERSRLGY ENSBTAP00000049984/1-353 GALRPCAQAA RGGAARASPL LLL------- -------RPP ADWERPRAGP bmy_00673T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012215/1-360 GALRPRAPAA RGGASRASPL LLLLLLPSPR LAAASPRRPL ADWERSRAGP 101 150 ENSP00000368468/1-359 AA---PPAGR SSAWRCSP-- --GVAAAAGA LPQYHGPAPA LVSCRRELSL ENSBTAP00000049984/1-353 PAPPGPPAGR GGVWRSQPGL APGLAGAAGA LPRCLGRVAA LASSRRELSL bmy_00673T0/1-232 ---------- -------PGL APGVACAAGA LHLCLGQVAA LASSRRELSV ENSTTRP00000012215/1-360 SA---ALAGR GCARRCQPGL APGVTCAAGA VHLCLGQVAA LASSRRELSV 151 200 ENSP00000368468/1-359 SAGSLQLERK RRDFTSSGSR KLYFDTHALV CLLEDNGFAT QQAEIIVSAL ENSBTAP00000049984/1-353 SAGNLQLDSR RREFTSSGNR KLYFDTHALV CVLEENGFTT QQAEVVVSAL bmy_00673T0/1-232 CAGSLHLESK RRDFTSSXSR KLYFDTHALV CLLEENGFTT QQAEIIVSAL ENSTTRP00000012215/1-360 CAGSLHLESK RRDFTSSRSR KLYFDTHAFV CLLEENGFTT QQAEIIVSAL 201 250 ENSP00000368468/1-359 VKILEANMDI VYKDMVTKMQ QEITFQQVMS QIANVKKDMI ILEKSEFSAL ENSBTAP00000049984/1-353 IKIMEANMDI IYKDMVTKMQ QEITLQQIMS QIANVKKDMI ILEKSEFSAL bmy_00673T0/1-232 VKIMEANMDI VYKDMVTKMQ Q--------- ---------- ---------- ENSTTRP00000012215/1-360 VKIMEANMDI VYKDMVTKMQ QEITLQEIMS QIANVKKDMI ILEKSEFSAL 251 300 ENSP00000368468/1-359 RAENEKIKLE LHQLKQQVMD EVIKVRTDTK LDFNLEKSRV KELYSLNEKK ENSBTAP00000049984/1-353 RSENEKIKLE LHRLKQQVMD EVIKVRTDTK LDFNLEKSRV KELYSLNERK bmy_00673T0/1-232 -----KIKLE LHRLKQQVMD EVIKVRTDTK LDFNLEKSRV KE-------- ENSTTRP00000012215/1-360 RSENEKIKLE LHQLKQQVMD EVIKVRTDTK LDFSLEKSRV KELYSLNERK 301 350 ENSP00000368468/1-359 LLELRTEIVA LHAQQDRALT QTDRKIETEV AGLKTMLESH KLDNIKYLA- ENSBTAP00000049984/1-353 LLEIKTEMVS LHAQQDRAVT QTDRKIDTEV AGLKTMLESH KLDNIKYLA- bmy_00673T0/1-232 ---------- LHAQQDRAIT QTDRKIDTEV AGLKTMLESH KLDNIKYLAV ENSTTRP00000012215/1-360 LLEVKTEMVS LHAQQDRAIT QTDRKIDTEV AGLKTMLESH KLDNIKYLA- 351 400 ENSP00000368468/1-359 -------GSI FTCLTVALGF YRLWI----- ---------- ---------- ENSBTAP00000049984/1-353 -------GSV FTCLTVALGF YRLWI----- ---------- ---------- bmy_00673T0/1-232 DFITLSGGGR STEDSTQLGH ---WVTLSSV RSIPDDIPTG DDEGHISLSV ENSTTRP00000012215/1-360 -------GSV FTCLTVALGF YRLWI----- ---------- ---------- 401 450 ENSP00000368468/1-359 ---- ENSBTAP00000049984/1-353 ---- bmy_00673T0/1-232 NLDH ENSTTRP00000012215/1-360 ----