KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:05 2014 Check: 00 .. Name: ENSTTRP00000006666/1-683 Len: 738 Check: 4940 Weight: 1.00 Name: ENSP00000430955/1-693 Len: 738 Check: 5622 Weight: 1.00 Name: ENSBTAP00000050056/1-707 Len: 738 Check: 5495 Weight: 1.00 Name: bmy_06461T0/1-557 Len: 738 Check: 9125 Weight: 1.00 Name: BACU003723/1-313 Len: 738 Check: 3565 Weight: 1.00 // 1 50 ENSTTRP00000006666/1-683 ---------M TRNHRIASSL CGSQVCSKKK MAAKEKLEAV LNVALRVPSI ENSP00000430955/1-693 MHRDRISPSN SPTWSLQVFS KKKKKKKKNN MAAKEKLEAV LNVALRVPSI ENSBTAP00000050056/1-707 ---------- ---------- ---------- MAAKEKLEAV LNVALRVPSI bmy_06461T0/1-557 ---------- ---------- ---------- ---------- ---------- BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006666/1-683 MLLDVLYRWD VSSFFQQIQR SSLNNNPLFQ YKYLALNMHY VGYILSVVLL ENSP00000430955/1-693 MLLDVLYRWD VSSFFQQIQR SSLSNNPLFQ YKYLALNMHY VGYILSVVLL ENSBTAP00000050056/1-707 MLLDVLYRWD VSSFFQQIQR SSLNNNPLFQ YKYLALNMHY VGYILSVVLL bmy_06461T0/1-557 ---------- ---------- ---------- ---------- ---------- BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006666/1-683 TLPRQHLVQL YLYVLTALLL YAGHQISRDY VRSELESAYE GPMYLEPLSM ENSP00000430955/1-693 TLPRQHLVQL YLYFLTALLL YAGHQISRDY VRSELEFAYE GPMYLEPLSM ENSBTAP00000050056/1-707 TLPRQHLVQL YLYFLTALLL YAGHQISRDY VRSELESAYE GPMYLEPLSM bmy_06461T0/1-557 ---------- ---------- ---------- ---------- --MYLEPLSM BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006666/1-683 NRFTTALIGQ LVVCTLCSCV MKTKQIWLFS AHMLPLLARL CLVPLETIVI ENSP00000430955/1-693 NRFTTALIGQ LVVCTLCSCV MKTKQIWLFS AHMLPLLARL CLVPLETIVI ENSBTAP00000050056/1-707 NRFTTALIGQ LVVCTLCSCV MKTKQIWLFS AHMLPLLARL CLVPLETIVI bmy_06461T0/1-557 NRFTTALIGQ LVVCTLCSCV MKTKQIWLFS AHMLPLLARL CLVPLETIVI BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006666/1-683 INKFAMIFTG LEVLYFLGSN LLVPYNLAKS AYRELVQVVE VYDLLALGMS ENSP00000430955/1-693 INKFAMIFTG LEVLYFLGSN LLVPYNLAKS AYRELVQVVE VYGLLALGMS ENSBTAP00000050056/1-707 INKFAMIFTG LEVLYFLGSN LLVPYNLAKS AYRELVQVVE VYGLLALGMS bmy_06461T0/1-557 INKFAMIFTG LEVLYFLGSN LLVPYNLAKS AYRELVQVVE VYGLLALGMS BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000006666/1-683 LWNQLVVPVL FMDFWLVLFA LQIYSYFSTR DQPAXXXXXX XXXXXXIAEC ENSP00000430955/1-693 LWNQLVVPVL FMVFWLVLFA LQIYSYFSTR DQPASRERLL FLFLTSIAEC ENSBTAP00000050056/1-707 LWNQLVVPVL FMVFWLVLFA LQIYSYFSTR DQPASRERLL FLFLTSIAEC bmy_06461T0/1-557 LWNQLVVPVL FMVFWLVLFA LQIYSYFSTR DQPASRERLL FLFLTSIAEC BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000006666/1-683 CSTPYSLLGL VFTVSFVALG VLTLCKFYLQ GYRAFMNDPA MNRGMTEGVT ENSP00000430955/1-693 CSTPYSLLGL VFTVSFVALG VLTLCKFYLQ GYRAFMNDPA MNRGMTEGVT ENSBTAP00000050056/1-707 CSTPYSLLGL VFTVSFVALG VLTLCKFYLQ GYRAFMNDPA MNRGMTEGVT bmy_06461T0/1-557 CSTPYSLLGL VFTVSFVALG VLTLCKFYLQ GYRAFMNDPA MNRGMTEGVT BACU003723/1-313 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000006666/1-683 LLILAVQTGL IELQVVHRAF LLSIILFIVV ASILQSMLEI ADPIVLALGA ENSP00000430955/1-693 LLILAVQTGL IELQVVHRAF LLSIILFIVV ASILQSMLEI ADPIVLALGA ENSBTAP00000050056/1-707 LLILAVQTGL IELQVVHRAF LLSIILFIVV ASILQSMLEI ADPIVLALGA bmy_06461T0/1-557 LLILAVQTGL IELQVVHRAF LLSIILFIVV ASILQSMLEI ADPIVLALGA BACU003723/1-313 ---------- ---------- ---------- ------MLEI ADPIVLALGA 401 450 ENSTTRP00000006666/1-683 SRDXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000430955/1-693 SRDKSLWKHF RAVSLCLFLL VFPAYMAYMI CQFFHMDFWL LIIISSSILT ENSBTAP00000050056/1-707 SRDKSLWKHF RAVSLCLFLL VFPAYMAYMI CQFFHMDFWL LIIISSSILT bmy_06461T0/1-557 SRDKSLWKHF RAVSLCLFLL VFPAYMAYMI CQFFHMDFWL LIIISSSILT BACU003723/1-313 SRDKSLWKHF RAVSLCLFLL VFPAYMAYMI CQFFHMDFWL LIIISSSILT 451 500 ENSTTRP00000006666/1-683 XXQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000430955/1-693 SLQVLGTLFI YVLFMVEEFR KEPVENMDDV IYYVNGTYRL LEFLVALCVV ENSBTAP00000050056/1-707 SLQVLGTLFI YVLFMVEEFR KEPVENMDDV IYYVNGTYRL LEFLVALCVV bmy_06461T0/1-557 SLQVLGTLFI YVLFMVEEFR KEPVENMDDV IYYVNGTYRL LEFLVALCVV BACU003723/1-313 SLQVLGTLFI YVLFMVEEFR KEPVENMDDV IYYVNGTYRL LEFLVALCVV 501 550 ENSTTRP00000006666/1-683 XXXXXXXXXX XXXXXXXXXX XXXSYYNVWL RAQLGWKSFL LRRDAVNKIK ENSP00000430955/1-693 AYGVSETIFG EWTVMGSMII FIHSYYNVWL RAQLGWKSFL LRRDAVNKIK ENSBTAP00000050056/1-707 AYGVSETIFG EWTVMGSMII FIHSYYNVWL RAQLGWKSFL LRRDAVNKIK bmy_06461T0/1-557 AYGVSETIFG EWTVMGSMII FIHSYYNVWL RAQLGWKSFL LRRDAVXKIK BACU003723/1-313 AYGVSETIFG EWTVMGSMII FIHSYYNVWL RAQLGWKSFL LRRDAVNKIK 551 600 ENSTTRP00000006666/1-683 SLPIATKEQL EKHNDICAIC YQDMKSAVIT PCSHFFHAGC LKKWLYVQET ENSP00000430955/1-693 SLPIATKEQL EKHNDICAIC YQDMKSAVIT PCSHFFHAGC LKKWLYVQET ENSBTAP00000050056/1-707 SLPIATKEQL EKHNDICAIC YQDMKSAVIT PCSHFFHAGC LKKWLYVQET bmy_06461T0/1-557 SLPVATKEQL EKHNDICAIC YQDMKSAVIT PCSHFFHAGC LKKWLYVQET BACU003723/1-313 SLPVATKEQL EKHNDICAIC YQDMKSAVIT PCSHFFHAGC LKKWLYVQET 601 650 ENSTTRP00000006666/1-683 CPLCHCHLKN SSQLPGLGAD PVPQPPA--- ---------- ---------- ENSP00000430955/1-693 CPLCHCHLKN SSQLPGLGTE PVLQPHA--- ---------- ---------- ENSBTAP00000050056/1-707 CPLCHCHLKN SSQLPGLGAD PVPQPPAGAE QHALRGGTEA PGQELPQGPR bmy_06461T0/1-557 CPLCHCHLKN SSQLPGLGAD PVPQPPA--- ---------- ---------- BACU003723/1-313 CPLCHCHLKN SSQLPGLGAD PVPQPPA--- ---------- ---------- 651 700 ENSTTRP00000006666/1-683 ---------- -----GAEQN VL-QEGTVPP GQEHPQGTGV QEGSRDNDEC ENSP00000430955/1-693 ---------- -----GAEQN VMFQEGTEPP GQEHTPGTRI QEGSRDNNEY ENSBTAP00000050056/1-707 AQEGSRDKDV PQPPAGAEQH AL-QGGTEAP GQELPQGPGA QEGSRDKDEG bmy_06461T0/1-557 ---------- -----GAEQN VL-QEGTEPP GQERPRGTGV QEGSRDNDEC BACU003723/1-313 ---------- -----GAEQN VL-QEGTEPP GQERPRGTGV QEGSRDNDEC 701 750 ENSTTRP00000006666/1-683 IARRSDSQEG TCDPKENPLS AKDAAHPVES A------- ENSP00000430955/1-693 IARRPDNQEG AFDPKEYPHS AKDEAHPVES A------- ENSBTAP00000050056/1-707 IARRSDSQEG TCDPKENPPG AEDEALPVEV GLEEKQQE bmy_06461T0/1-557 IARRSDSQEG ACDPKENPLS AKDAAHPVEV SLEEKQQE BACU003723/1-313 IARRSDSQEG ACDPKENPLS AKDAAHPVEV SLEEKQQE