KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:08 2014 Check: 00 .. Name: ENSP00000345774/1-508 Len: 630 Check: 8203 Weight: 1.00 Name: ENSTTRP00000007282/1-506 Len: 630 Check: 4200 Weight: 1.00 Name: ENSBTAP00000050170/1-485 Len: 630 Check: 2902 Weight: 1.00 Name: bmy_19849T0/1-532 Len: 630 Check: 3989 Weight: 1.00 Name: BACU005249/1-583 Len: 630 Check: 3189 Weight: 1.00 // 1 50 ENSP00000345774/1-508 ---------- ---------- ---------- ---------- -------MEL ENSTTRP00000007282/1-506 ---------- ---------- ---------- ---------- -------MER ENSBTAP00000050170/1-485 ---------- ---------- ---------- ---------- -------MER bmy_19849T0/1-532 ARRPACGGHV GHAGQSARGS GSTRARRAVA GQLAAAERAR WRHGGLAMER BACU005249/1-583 ---------- ---------- ---------- ---------- -------MER 51 100 ENSP00000345774/1-508 EVRRVRQAFL SGRSRPLRFR LQQLEALRRM VQEREKDILT AIAADLCKSE ENSTTRP00000007282/1-506 EVQRVRAAFG SGRSRPLTFR RRQLEALRAM VQERERDILA AIAADLSKSE ENSBTAP00000050170/1-485 EVQRVRAAFG SGRSRPLTFR RRQLEALRVM VQEREKDILA AIGADLSKSE bmy_19849T0/1-532 EVQRVRAAFG SGRSRPLTFR RRQLEALRAM VQERERDILA AIAADLSKSE BACU005249/1-583 EVQRVRAAFG SGRSRPLTFR RRQLEALRAM VQEREKDILA AIAADLSKSE 101 150 ENSP00000345774/1-508 FNVYSQEVIT VLGEIDFMLE NLPEWVTAKP VKKNVLTMLD EAYIQPQPLG ENSTTRP00000007282/1-506 FNAYSQEVIT VLGEIELVLE KLPEWAAAKP AQKNLVTMLD EAYVQPEPLG ENSBTAP00000050170/1-485 FNAYSQEVIT VLGEIDLMLE KLPEWAAAKP AQRNLLTMLD EAYIQPEPLG bmy_19849T0/1-532 FNAYSQEVIT VLGEIDLVLE KLPEWAAAKP AQKNLLTMLD EAYVQPEPLG BACU005249/1-583 FNAYSQEVIT VLGEIDLVLE KLPEWAAAKP AQKNLLTMLD EAYVQPEPLG 151 200 ENSP00000345774/1-508 VVLIIGAWNY PFVLTIQPLI GAIAAGNAVI IKPSELSENT AKILAKLLPQ ENSTTRP00000007282/1-506 VVLIIGAWNY PFVLTVQPLI GAIAAGNAVI IKPXXXXXXX XXXXXXXXXX ENSBTAP00000050170/1-485 VVLIIGAWNY PFALTIQPLI GAIAAGNAVI IKPSEVSENT AKLLAKLLPQ bmy_19849T0/1-532 VVLIIGAWNY PFVLTIQPLI GAIAAGNAVI IKPSEISENT AKVLAKLLPQ BACU005249/1-583 VVLIIGAWNY PFVLTIQPLI GAIAAGNAVI IKPSEISENT AKVLAKLLPQ 201 250 ENSP00000345774/1-508 YLDQDLYIVI NGGVEETTEL LKQRFDHIFY TGNTAVGKIV MEAAAKHLTP ENSTTRP00000007282/1-506 XXXXDLYAVV NGGVEETTEL LKQRFDHILY TGNTTVGKIV MEAAAKHLTP ENSBTAP00000050170/1-485 YLDQDLYAVV TGGVEETTEL LKQRFDHILY TGNTTVGKIV MQAAAKHLTP bmy_19849T0/1-532 YLDQDLYAVV NGGIEETTEL LKQRFDHILY TGNTTVGKVV MEAAAKHLTP BACU005249/1-583 YLDQDLYAVV NGGIEETTEL LKQRFDHILY TGNTAVGKVV MEAAAKHLTP 251 300 ENSP00000345774/1-508 VTLELGGKSP CYIDKDCDLD IVCRRITWGK YMNCGQTCIA PDYILCEASL ENSTTRP00000007282/1-506 VTLELGGKSP CYVDKDCDLD VACRRIAWGK YMNCGQTCIA PDYVLCEPSL ENSBTAP00000050170/1-485 VTLELGGKSP CYVDRDCDLD VACRRIAWGK FMNCGQTCIA PDYVLCEPSL bmy_19849T0/1-532 VTLELGGKSP CYVDKDCDLD VACRRITWGK YMNCGQTCIA PDYVLCEPSL BACU005249/1-583 VTLELGGKSP CYVDKDCDLD VACRRITWGK YMNCGQTCIA PDYVLCEPSL 301 350 ENSP00000345774/1-508 QNQIVWKIKE TVKEFYGENI KESPDYERII NLRHFKRILS LLEGQKIAFG ENSTTRP00000007282/1-506 QDLIVRKVKE AVKEFYGENV KASPDYERII NLRHFKRIRG LLEGQKIAFG ENSBTAP00000050170/1-485 QDLIVQKVQE AVKGFYGENV KESPDYERIV NLRHFKRIQS LLEGQKIAFG bmy_19849T0/1-532 QDLIVQKVKE AVKEFYGENI KESPDYERII NLRHFKRIRS LLEGQKIAFG BACU005249/1-583 QDLIVQKVKE AVKEFYGENI KESPDYERII NLRHFKRIRS LLEGQKIAFG 351 400 ENSP00000345774/1-508 GETDEATRYI APTVLTDVDP KTKVMQEEIF GPILPIVPVK NVDEAINFIN ENSTTRP00000007282/1-506 GETDEATRYI APTILTDVDP KTKVMQEEIF GPILPIVPVK NAEEAIQFIN ENSBTAP00000050170/1-485 GEMDEATRYI APTILTDVDP GTKVMQEEIF GPILPIVPVK NADEAIQFIN bmy_19849T0/1-532 GETDEATRYI APTILTDVDP ETKVMQEEIF GPILPIVPVK NADEAIQFIN BACU005249/1-583 GETDETTRYI APTILTDVDP EAKVMQEEIF GPILPIVPVK NADEAIQFIN 401 450 ENSP00000345774/1-508 EREKPLALYV FSHNHKLIKR MIDETSSGGV TGNDVIMHFT LNSFPFGGV- ENSTTRP00000007282/1-506 EREKPLAFYV FSHNTKLIKQ MIDRTSSGGV TGNDVIMHFM LSSLPFGGV- ENSBTAP00000050170/1-485 EREKPLAFYV FSHNSKLIKR MIDGTSSGGV TGNDVIMHFT LSSLPFGGV- bmy_19849T0/1-532 EREKPLAFYV FSRNTKLIKR MIDRTSSGGV TGNDVIMHFM LSSLPFGGV- BACU005249/1-583 EREKPLAFYV FSHNTKLIKR MIDRTSSGGV TGNDVIMHFM LSSLPFGGVG 451 500 ENSP00000345774/1-508 ---------- ---------- ---------- ---------G SSGMGAYHGK ENSTTRP00000007282/1-506 ---------- ---------- ---------- ---------G SSGMGAYHGK ENSBTAP00000050170/1-485 ---------- ---------- ---------- ---------G SSGMGAYHGK bmy_19849T0/1-532 ---------- ---------- ---------- ---------G SSGMGAYHGK BACU005249/1-583 ARGSSGSAMC DSGNGHTRLS ERAAWSPARA LPSPLSLSGG SSGMGAYHGK 501 550 ENSP00000345774/1-508 HSFDTFSHQR PCLLKSLKRE GANKLRYPPN SQSKVDWGKF FLLKRFNKEK ENSTTRP00000007282/1-506 HSFDTFSHQR PCLLKSLKRE GANKLRYPPN SQSKVDWAKL FFLKRLNRGK ENSBTAP00000050170/1-485 HSFDTFSHQR PCLLKTLKRE GMNQLRYPPN SQSKVDWAKF FMLKRFNKER bmy_19849T0/1-532 HSFDTFSHQR PCLLKSLKRE GANKLRYPPN SQSKVDWAKL FLLKRLNKGK BACU005249/1-583 HSFDTFSHQR PCLLKSLKRE GANKLRYPPN SQSKVDWAKL FFLKRLNKGK 551 600 ENSP00000345774/1-508 LGLLLLTFLG IVAAVLVKKY QAVLRRKALL IFLVVHRLRW S--------- ENSTTRP00000007282/1-506 LGLLLLALLG VVVAALMKKY QAVLRKALLI FLAVHRLCR- ---------- ENSBTAP00000050170/1-485 LCLLLLTLLG VLAAVLIK-- ---------- ---------- ---------- bmy_19849T0/1-532 LGLLLLTLLG VVVAALMK-- ---------- ---------- ---------- BACU005249/1-583 LGLLLLTLLG VVLAALMKGV GSPYGVTALV ELEIPVTSEI AWVSSEIPGC 601 650 ENSP00000345774/1-508 ---------- ---------- ------SKQR ENSTTRP00000007282/1-506 ---------- ---------- ------PGSQ ENSBTAP00000050170/1-485 ---------- ---------- ------AGYY bmy_19849T0/1-532 ---------- ---------- ------AGYC BACU005249/1-583 AEEKGPVDFS GSSQIVPSCE PGTPEPSPVC